mRNA_M-pyrifera_M_contig115990.3320.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115990.3320.1
Unique NamemRNA_M-pyrifera_M_contig115990.3320.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A672PVV5_SINGR (Zgc:153044 n=10 Tax=Cyprininae TaxID=2743694 RepID=A0A672PVV5_SINGR)

HSP 1 Score: 84.7 bits (208), Expect = 1.340e-18
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    7 EKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCYA----GVIP 276
            ++NG+VL+HC  G+SRS+T+ LAYL+     +L EA ALLK+ RPI  PN+GFW+ LIE E K  G+ +V M+    G++ P  Y     G+IP
Sbjct:   86 DENGRVLLHCNAGVSRSATLCLAYLMKHRRLTLAEAHALLKSLRPIVRPNSGFWRQLIEYELKLHGKNTVSMINSPVGHI-PDLYERETRGLIP 178          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A7J6D3E2_9TELE (Uncharacterized protein n=1 Tax=Onychostoma macrolepis TaxID=369639 RepID=A0A7J6D3E2_9TELE)

HSP 1 Score: 84.0 bits (206), Expect = 2.080e-18
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    7 EKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCYA----GVIP 276
            +++G+VL+HC  G+SRS+T+ LAYL+     +L EA ALLK+ RPI  PN+GFW+ LIE E K  G+ +V M+    G++ P  Y     G+IP
Sbjct:   75 DEDGRVLLHCNAGVSRSATLCLAYLMKHRRLTLAEAHALLKSLRPIVRPNSGFWRQLIEYERKLHGKNTVSMINSPVGHI-PDLYERETRGLIP 167          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A6P6P3V5_CARAU (dual specificity protein phosphatase 18-like n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6P3V5_CARAU)

HSP 1 Score: 84.0 bits (206), Expect = 2.680e-18
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    7 EKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCYA----GVIP 276
            +++G+VL+HC  G+SRS+T+ LAYL+     +L EA ALLK+ RPI  PN+GFW+ LIE E K  G+ +V M+    G++ P  Y     G+IP
Sbjct:   86 DEDGRVLLHCNAGVSRSATLCLAYLMKHRHLTLAEAHALLKSLRPIVRPNSGFWRQLIEYEHKLHGKNTVSMINSPLGHI-PDLYERETIGLIP 178          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A6P7IUD1_9TELE (dual specificity protein phosphatase 18-like n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7IUD1_9TELE)

HSP 1 Score: 84.0 bits (206), Expect = 3.130e-18
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    7 EKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCY 261
            E+ G+ LVHC  G+SRSST+ +AYL+   G +L+EA   LKT RP+  PN GFW+ LIE E K  G  SV MV  + G + P+ Y
Sbjct:   93 ERGGRTLVHCNAGVSRSSTLCMAYLMKHSGLTLQEAHTWLKTCRPVVRPNLGFWKQLIEYEMKIHGCKSVRMVSSSIGEI-PNIY 176          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A8D0DXB3_9SAUR (Dual specificity phosphatase 21 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DXB3_9SAUR)

HSP 1 Score: 83.2 bits (204), Expect = 6.360e-18
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   13 NGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCY 261
            +G+ LVHCA G+SRS+ + +AYL+  +G SL  A A +K  RP+  PN GFWQ LI+ E+K  G+ SV+MV+   G V+P  Y
Sbjct:   96 HGRTLVHCAAGVSRSAALCIAYLMKYQGMSLANAHAWVKACRPVIRPNNGFWQQLIQYEQKLFGKTSVKMVQSPLG-VIPDLY 177          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A671QYL7_9TELE (Zgc:153044 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671QYL7_9TELE)

HSP 1 Score: 82.4 bits (202), Expect = 1.160e-17
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    7 EKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCYA----GVIP 276
            +++G+VL+HC  G+SRS+T+ LAYL+     +L EA ALLK+ RPI  PN+GFW+ LIE E K  G+ +V M+    G++ P  Y     G+IP
Sbjct:   90 DEDGRVLLHCNAGVSRSATLCLAYLMKHRCLTLAEAHALLKSLRPIVRPNSGFWRQLIEYELKLHGKNTVSMINSPVGHI-PDLYERETRGLIP 182          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A6G0UE54_9BILA (Uncharacterized protein (Fragment) n=2 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UE54_9BILA)

HSP 1 Score: 80.9 bits (198), Expect = 1.700e-17
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    4 KEKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCY 261
            K  NGK +V+CA GISRS+++ + YLV  EGFSL++A+  +  +RPI +PN GFW+ +I  E + RG +SV +++      +P  Y
Sbjct:   46 KNSNGKAIVYCAAGISRSASLCMMYLVISEGFSLRDAFVEVGKARPIISPNLGFWRQMIAYEAEKRGASSVSLLKGGMRRSIPDVY 131          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A6P8HZK1_ACTTE (Protein-tyrosine-phosphatase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HZK1_ACTTE)

HSP 1 Score: 82.0 bits (201), Expect = 1.820e-17
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 KEKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCY 261
            K   GKVLVHC  GISRSS++ +AYL+  +  SL++A+ L+K  RPI  PN  FWQ+L++ E+K  G+ +V M E   G ++P+ +
Sbjct:   93 KNMRGKVLVHCMAGISRSSSLVIAYLMKYKKMSLRDAYHLVKKKRPIINPNPRFWQSLVDYEKKLFGKTTVTMKESEFGVLVPAIH 178          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: A0A3Q1BP79_AMPOC (Dual specificity protein phosphatase 18-like n=3 Tax=Pomacentridae TaxID=30863 RepID=A0A3Q1BP79_AMPOC)

HSP 1 Score: 80.5 bits (197), Expect = 6.220e-17
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    7 EKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCY 261
            E +G+ LVHC  G+SRS  + +AYLV   G +L EA   +KT RP+A PN GFW+ L++ E + RG +SV+MV  + G + P  Y
Sbjct:   88 ESSGRTLVHCNAGVSRSPALCMAYLVKHRGLTLLEAHRWVKTCRPVARPNNGFWRQLVQYEVELRGCSSVQMVSSSMGEI-PDIY 171          
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Match: UPI0018861F5A (dual specificity protein phosphatase 18 n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018861F5A)

HSP 1 Score: 80.5 bits (197), Expect = 6.220e-17
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    7 EKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAAPNTGFWQALIELEEKARGEASVEMVELASGYVLPSCY 261
            +  G+ LVHC  G+SRS+   +A+LV   G +L EA A LKT RP+A PN GFW+ LI  EE+ RG  SV MV  + G + P  Y
Sbjct:   88 QSGGRTLVHCNAGVSRSAAFCMAFLVKHRGVALLEAHAWLKTCRPMARPNNGFWKQLIHYEEELRGCTSVRMVSSSMGEI-PDVY 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115990.3320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A672PVV5_SINGR1.340e-1846.81Zgc:153044 n=10 Tax=Cyprininae TaxID=2743694 RepID... [more]
A0A7J6D3E2_9TELE2.080e-1845.74Uncharacterized protein n=1 Tax=Onychostoma macrol... [more]
A0A6P6P3V5_CARAU2.680e-1845.74dual specificity protein phosphatase 18-like n=1 T... [more]
A0A6P7IUD1_9TELE3.130e-1849.41dual specificity protein phosphatase 18-like n=1 T... [more]
A0A8D0DXB3_9SAUR6.360e-1848.19Dual specificity phosphatase 21 n=1 Tax=Salvator m... [more]
A0A671QYL7_9TELE1.160e-1745.74Zgc:153044 n=1 Tax=Sinocyclocheilus anshuiensis Ta... [more]
A0A6G0UE54_9BILA1.700e-1743.02Uncharacterized protein (Fragment) n=2 Tax=Halicep... [more]
A0A6P8HZK1_ACTTE1.820e-1745.35Protein-tyrosine-phosphatase n=1 Tax=Actinia teneb... [more]
A0A3Q1BP79_AMPOC6.220e-1745.88Dual specificity protein phosphatase 18-like n=3 T... [more]
UPI0018861F5A6.220e-1748.24dual specificity protein phosphatase 18 n=1 Tax=Sy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115990contigM-pyrifera_M_contig115990:154..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score89.0
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog7209.EFO22672.1
KEGG koko:K14165
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dual specificity phosphatase, catalytic domain
EggNOG OGs1KVN6@119089,38CXQ@33154,3BFWX@33208,3D2D0@33213,40CQR@6231,COG2453@1,KOG1718@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.V
Best tax levelChromadorea
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.4738479-CDS-M-pyrifera_M_contig115990:153..4321622815676.4738479-CDS-M-pyrifera_M_contig115990:153..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115990 154..432 -
1692277516.8540885-CDS-M-pyrifera_M_contig115990:153..4321692277516.8540885-CDS-M-pyrifera_M_contig115990:153..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115990 154..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115990.3320.1prot_M-pyrifera_M_contig115990.3320.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115990 154..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115990.3320.1

>prot_M-pyrifera_M_contig115990.3320.1 ID=prot_M-pyrifera_M_contig115990.3320.1|Name=mRNA_M-pyrifera_M_contig115990.3320.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
QKEKNGKVLVHCAMGISRSSTVTLAYLVTKEGFSLKEAWALLKTSRPIAA
PNTGFWQALIELEEKARGEASVEMVELASGYVLPSCYAGVIP*
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mRNA from alignment at M-pyrifera_M_contig115990:154..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115990.3320.1 ID=mRNA_M-pyrifera_M_contig115990.3320.1|Name=mRNA_M-pyrifera_M_contig115990.3320.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig115990:154..432- (Macrocystis pyrifera P11B4 male)
CAGAAGGAGAAGAATGGGAAGGTCCTTGTCCACTGTGCAATGGGCATTTC GAGGAGCTCCACCGTCACTCTCGCATACCTCGTCACCAAGGAAGGCTTCA GTCTCAAAGAGGCATGGGCACTGCTGAAGACAAGCAGGCCCATTGCTGCT CCTAACACTGGCTTTTGGCAGGCGCTCATTGAGCTGGAGGAGAAGGCCAG GGGGGAGGCCTCCGTGGAGATGGTCGAGCTGGCCTCTGGTTACGTGCTGC CAAGCTGCTATGCTGGAGTCATTCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115990:154..432-

>mRNA_M-pyrifera_M_contig115990.3320.1 ID=mRNA_M-pyrifera_M_contig115990.3320.1|Name=mRNA_M-pyrifera_M_contig115990.3320.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig115990:154..432- (Macrocystis pyrifera P11B4 male)
CAGAAGGAGAAGAATGGGAAGGTCCTTGTCCACTGTGCAATGGGCATTTC
GAGGAGCTCCACCGTCACTCTCGCATACCTCGTCACCAAGGAAGGCTTCA
GTCTCAAAGAGGCATGGGCACTGCTGAAGACAAGCAGGCCCATTGCTGCT
CCTAACACTGGCTTTTGGCAGGCGCTCATTGAGCTGGAGGAGAAGGCCAG
GGGGGAGGCCTCCGTGGAGATGGTCGAGCTGGCCTCTGGTTACGTGCTGC
CAAGCTGCTATGCTGGAGTCATTCCCTGACAGAAGGAGAAGAATGGGAAG
GTCCTTGTCCACTGTGCAATGGGCATTTCGAGGAGCTCCACCGTCACTCT
CGCATACCTCGTCACCAAGGAAGGCTTCAGTCTCAAAGAGGCATGGGCAC
TGCTGAAGACAAGCAGGCCCATTGCTGCTCCTAACACTGGCTTTTGGCAG
GCGCTCATTGAGCTGGAGGAGAAGGCCAGGGGGGAGGCCTCCGTGGAGAT
GGTCGAGCTGGCCTCTGGTTACGTGCTGCCAAGCTGCTATGCTGGAGTCA
TTCCCTGA
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