mRNA_M-pyrifera_M_contig115985.3318.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115985.3318.1
Unique NamemRNA_M-pyrifera_M_contig115985.3318.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A3D1G7K3_9BACT (Zinc metalloprotease n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G7K3_9BACT)

HSP 1 Score: 234 bits (596), Expect = 7.970e-73
Identity = 116/158 (73.42%), Postives = 136/158 (86.08%), Query Frame = 1 
Query:    1 IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKL 474
            I P+ ++  +GI  PTL M G + V LG FASI  GW++T +QTSGI+GGF+RMI+GDIS RQN+GGPIAIA  T+ AT+QAGW GFWQITA+LSITLAIMNILPIPALDGGHL+FLIYEG+ RKEPS+KFK+VAQNIGFIVLL+LMVFVIFNDI KL
Sbjct:  285 ILPNQDTKTIGIVAPTLAMAGAQRVELGFFASIKAGWDETVDQTSGIIGGFTRMITGDISFRQNIGGPIAIAKVTRDATEQAGWIGFWQITAMLSITLAIMNILPIPALDGGHLMFLIYEGIARKEPSDKFKLVAQNIGFIVLLSLMVFVIFNDILKL 442
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A3D4USN3_9BACT (Zinc metalloprotease n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D4USN3_9BACT)

HSP 1 Score: 225 bits (574), Expect = 1.640e-69
Identity = 112/155 (72.26%), Postives = 128/155 (82.58%), Query Frame = 1 
Query:   13 PESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            P+   +GI  P LE+ GG  +  G F SI  GWN+T EQT+GIL GF+RMI GDISVRQNLGGPIAIA+ TKQATD  GW GFW ITALLSITLAIMNILPIPALDGGHLVFLIYEG+ RKEP+EK +I+AQNIGF VL+TLM+FV+FND+ KLF
Sbjct:  289 PKDGAIGIYQPDLEIAGGIRIDYGFFESITAGWNETGEQTTGILQGFARMIKGDISVRQNLGGPIAIANMTKQATDNNGWIGFWTITALLSITLAIMNILPIPALDGGHLVFLIYEGITRKEPTEKVRIIAQNIGFFVLVTLMIFVVFNDVIKLF 443
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A2E6N4A3_9BACT (Zinc metalloprotease n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E6N4A3_9BACT)

HSP 1 Score: 221 bits (563), Expect = 7.100e-68
Identity = 112/159 (70.44%), Postives = 129/159 (81.13%), Query Frame = 1 
Query:    1 IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            I PD E+  +GI  P L  VG     L    SI EGW Q  EQT GI+GGFSRM SGDISVR+NLGGPIAIAS TKQATDQAGW GFW++TALLSITLAIMNILPIPALDGGHLVFL+YEG+ R+EP+EK KI+AQNIGF++L++LMVFVI ND+ +LF
Sbjct:  285 IEPD-ENRTIGIAAPNLAQVGATSTKLNFAESIQEGWRQVTEQTMGIIGGFSRMFSGDISVRKNLGGPIAIASLTKQATDQAGWIGFWEMTALLSITLAIMNILPIPALDGGHLVFLVYEGIARREPTEKVKIMAQNIGFLLLISLMVFVILNDVIRLF 442
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A1B6YDA3_9BACT (Zinc metalloprotease n=2 Tax=unclassified Balneola TaxID=2615059 RepID=A0A1B6YDA3_9BACT)

HSP 1 Score: 216 bits (549), Expect = 9.090e-66
Identity = 107/154 (69.48%), Postives = 125/154 (81.17%), Query Frame = 1 
Query:   16 ESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            E N++G+G P     G   +  G+F SI  GW +T +QT+GI+ GF+RMI GDISVRQNLGGPIAIA  TKQATD  GW GFW ITALLSITLAIMNILPIPALDGGHLVFLIYEG+ RKEP+EK +I+AQNIGF VL+TLM+FV+FND+ KLF
Sbjct:  291 EDNKIGVGGPQTYQFG-TRIEYGIFESIAAGWEETADQTTGIIQGFARMIKGDISVRQNLGGPIAIAEMTKQATDSNGWIGFWTITALLSITLAIMNILPIPALDGGHLVFLIYEGITRKEPTEKVRIIAQNIGFFVLVTLMIFVVFNDVIKLF 443
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A2D9FTJ0_9BACT (Zinc metalloprotease n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FTJ0_9BACT)

HSP 1 Score: 216 bits (549), Expect = 9.790e-66
Identity = 106/159 (66.67%), Postives = 130/159 (81.76%), Query Frame = 1 
Query:    1 IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            I PDPE+  +GI  P+L+ +G E +  G F SIGEG+NQT EQT GIL GF+RMI+GDISV QNLGGPIAIAS T++ATD AGW GFW ITALLSITLAI+NILPIPALDGGHLVFLIYEG+ R+EPS+K +++AQ IGF +++ L +FV+FND  + F
Sbjct:  286 ITPDPETKTIGIASPSLQTLGLERIDYGFFESIGEGYNQTIEQTVGILQGFTRMITGDISVSQNLGGPIAIASLTREATDTAGWIGFWNITALLSITLAIINILPIPALDGGHLVFLIYEGITRREPSDKVRMIAQQIGFFLMVGLFIFVMFNDAFRYF 444
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: UPI000CD8E8B6 (RIP metalloprotease RseP n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD8E8B6)

HSP 1 Score: 214 bits (546), Expect = 2.750e-65
Identity = 105/159 (66.04%), Postives = 129/159 (81.13%), Query Frame = 1 
Query:    1 IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            I PD ES  +GI  P  + +G E +  G F SIGEG+NQT EQT+GIL GF+RM++GDISV QNLGGPIAIA+ T++ATDQAGW GFW ITALLSITLAI+NILPIPALDGGHLVFL+YEG+ R+EPSEK ++VAQ IGF +++ L +FV+FND  + F
Sbjct:  286 IMPDQESKTIGIASPNPQSLGFERIEYGFFESIGEGYNQTMEQTTGILQGFARMLTGDISVTQNLGGPIAIANITREATDQAGWIGFWNITALLSITLAILNILPIPALDGGHLVFLLYEGITRREPSEKVRMVAQQIGFFLMIGLFIFVMFNDAFRYF 444
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: UPI0003786D51 (RIP metalloprotease RseP n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI0003786D51)

HSP 1 Score: 214 bits (545), Expect = 3.700e-65
Identity = 106/152 (69.74%), Postives = 127/152 (83.55%), Query Frame = 1 
Query:   22 NQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            N +GI  P L++ GG  +  G   S+  GW++T EQT+GIL GF+RMISGDISV+QNLGGPIAIA+ T+QATD  GW GFW ITALLSITLAIMNILPIPALDGGHLVFLIYEG+ R+EP+EK KI+AQNIGF VL++LM+FV+FND+ KLF
Sbjct:  293 NTLGIYPPDLDIAGGIRIDYGFGESLAAGWDETAEQTTGILQGFARMISGDISVKQNLGGPIAIANMTRQATDSNGWIGFWTITALLSITLAIMNILPIPALDGGHLVFLIYEGITRREPTEKVKIIAQNIGFFVLVSLMLFVVFNDVIKLF 444
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A521ALZ9_9BACT (Zinc metalloprotease n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521ALZ9_9BACT)

HSP 1 Score: 209 bits (533), Expect = 2.300e-63
Identity = 102/159 (64.15%), Postives = 128/159 (80.50%), Query Frame = 1 
Query:    1 IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            IAPDPE+  VGI  PTL+M G   +  GLF SI EG+++T ++T G +  F+RM SGDISV QNLGGPIAIA+ T++ATD+AGW GFW ITALLSITLAI+NILPIPALDGGHLVFLIYEG+ R+EPSEK ++VAQ IGF +++ + +FV+FND  + F
Sbjct:  286 IAPDPETQTVGIVSPTLDMAGATRIDYGLFESISEGYHETVDRTVGTVQAFARMFSGDISVTQNLGGPIAIANMTREATDRAGWIGFWNITALLSITLAILNILPIPALDGGHLVFLIYEGITRREPSEKVRMVAQQIGFFIMIAIFIFVMFNDAFRYF 444
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BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A2D8CD58_9BACT (Zinc metalloprotease n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D8CD58_9BACT)

HSP 1 Score: 208 bits (530), Expect = 6.780e-63
Identity = 104/159 (65.41%), Postives = 126/159 (79.25%), Query Frame = 1 
Query:    1 IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            I PD E+  +GI  P  + +G E +  G   S+ EG+NQT EQT GI+ GF+RMI+GDISV QNLGGPIAIAS T++ATDQAGW GFW ITALLSITLAI+NILPIPALDGGHLVFLIYEGV R+EPSEK ++VAQ IGF +++ L +FV+FND  + F
Sbjct:  286 ITPDQETKTIGIASPNPQTLGFERIDYGFLESLEEGYNQTVEQTVGIIQGFTRMITGDISVSQNLGGPIAIASITREATDQAGWIGFWNITALLSITLAILNILPIPALDGGHLVFLIYEGVTRREPSEKVRMVAQQIGFFIMVGLFIFVMFNDAFRYF 444
[Close]
BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Match: A0A6A8Q561_9BACT (Zinc metalloprotease n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q561_9BACT)

HSP 1 Score: 208 bits (530), Expect = 6.780e-63
Identity = 104/159 (65.41%), Postives = 125/159 (78.62%), Query Frame = 1 
Query:    1 IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGGFSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAIMNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFVIFNDITKLF 477
            I PD E+  +GI  P+  M+G E +  G F SI  G ++T EQT GI+ GFSRMISGDISVRQNLGGPIAIAS+T+ ATD AGW GFW+ITALLSITLAI+NILPIP LDGGHLVFL+YEG+ R+EPSEK K+ AQ IGF +++ L +FV+FND  K F
Sbjct:  286 ILPDQETKTIGIAAPSASMLGYERIDYGFFESIQAGASKTAEQTVGIVQGFSRMISGDISVRQNLGGPIAIASYTRDATDAAGWVGFWEITALLSITLAILNILPIPVLDGGHLVFLLYEGITRREPSEKVKMAAQQIGFFLMIALFIFVMFNDAFKYF 444
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115985.3318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1G7K3_9BACT7.970e-7373.42Zinc metalloprotease n=1 Tax=Balneolaceae bacteriu... [more]
A0A3D4USN3_9BACT1.640e-6972.26Zinc metalloprotease n=4 Tax=Bacteroidetes/Chlorob... [more]
A0A2E6N4A3_9BACT7.100e-6870.44Zinc metalloprotease n=1 Tax=Balneola sp. TaxID=20... [more]
A0A1B6YDA3_9BACT9.090e-6669.48Zinc metalloprotease n=2 Tax=unclassified Balneola... [more]
A0A2D9FTJ0_9BACT9.790e-6666.67Zinc metalloprotease n=2 Tax=Balneolaceae TaxID=18... [more]
UPI000CD8E8B62.750e-6566.04RIP metalloprotease RseP n=1 Tax=Gracilimonas amyl... [more]
UPI0003786D513.700e-6569.74RIP metalloprotease RseP n=1 Tax=Balneola vulgaris... [more]
A0A521ALZ9_9BACT2.300e-6364.15Zinc metalloprotease n=1 Tax=Gracilimonas mengyeen... [more]
A0A2D8CD58_9BACT6.780e-6365.41Zinc metalloprotease n=1 Tax=Balneola sp. TaxID=20... [more]
A0A6A8Q561_9BACT6.780e-6365.41Zinc metalloprotease n=1 Tax=Balneolaceae bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115985contigM-pyrifera_M_contig115985:82..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score219.5
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog1121930.AQXG01000003_gene2512
Preferred namerseP
KEGG koko:K11749
KEGG Pathwayko02024,ko04112,map02024,map04112
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc metalloprotease
EggNOG OGs1INRC@117747,4NEAR@976,COG0750@1,COG0750@2
COG Functional cat.M
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.35343-CDS-M-pyrifera_M_contig115985:81..5611622815676.35343-CDS-M-pyrifera_M_contig115985:81..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115985 82..561 -
1692277516.8056464-CDS-M-pyrifera_M_contig115985:81..5611692277516.8056464-CDS-M-pyrifera_M_contig115985:81..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115985 82..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115985.3318.1prot_M-pyrifera_M_contig115985.3318.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115985 82..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115985.3318.1

>prot_M-pyrifera_M_contig115985.3318.1 ID=prot_M-pyrifera_M_contig115985.3318.1|Name=mRNA_M-pyrifera_M_contig115985.3318.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
IAPDPESNQVGIGIPTLEMVGGEHVSLGLFASIGEGWNQTWEQTSGILGG
FSRMISGDISVRQNLGGPIAIASFTKQATDQAGWTGFWQITALLSITLAI
MNILPIPALDGGHLVFLIYEGVVRKEPSEKFKIVAQNIGFIVLLTLMVFV
IFNDITKLF*
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mRNA from alignment at M-pyrifera_M_contig115985:82..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115985.3318.1 ID=mRNA_M-pyrifera_M_contig115985.3318.1|Name=mRNA_M-pyrifera_M_contig115985.3318.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig115985:82..561- (Macrocystis pyrifera P11B4 male)
ATAGCCCCAGATCCGGAATCAAATCAAGTTGGAATTGGTATTCCTACTTT
AGAAATGGTAGGAGGCGAACATGTGAGCCTTGGTCTTTTTGCTTCAATTG
GTGAAGGATGGAATCAAACTTGGGAACAGACTTCAGGTATTTTAGGAGGT
TTTTCAAGAATGATTTCGGGTGATATTTCCGTAAGGCAAAATCTTGGAGG
TCCTATAGCAATTGCAAGCTTTACTAAACAAGCCACCGATCAGGCTGGGT
GGACTGGTTTTTGGCAAATTACAGCTCTTTTAAGTATTACACTCGCCATT
ATGAATATTCTTCCAATTCCAGCATTAGATGGAGGACACTTGGTATTTTT
GATTTATGAAGGTGTAGTAAGAAAAGAGCCATCGGAAAAATTTAAAATTG
TAGCTCAAAATATTGGCTTTATCGTGCTTTTAACTTTGATGGTATTCGTG
ATTTTCAATGACATAACGAAACTTTTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115985:82..561-

>mRNA_M-pyrifera_M_contig115985.3318.1 ID=mRNA_M-pyrifera_M_contig115985.3318.1|Name=mRNA_M-pyrifera_M_contig115985.3318.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig115985:82..561- (Macrocystis pyrifera P11B4 male)
ATAGCCCCAGATCCGGAATCAAATCAAGTTGGAATTGGTATTCCTACTTT
AGAAATGGTAGGAGGCGAACATGTGAGCCTTGGTCTTTTTGCTTCAATTG
GTGAAGGATGGAATCAAACTTGGGAACAGACTTCAGGTATTTTAGGAGGT
TTTTCAAGAATGATTTCGGGTGATATTTCCGTAAGGCAAAATCTTGGAGG
TCCTATAGCAATTGCAAGCTTTACTAAACAAGCCACCGATCAGGCTGGGT
GGACTGGTTTTTGGCAAATTACAGCTCTTTTAAGTATTACACTCGCCATT
ATGAATATTCTTCCAATTCCAGCATTAGATGGAGGACACTTGGTATTTTT
GATTTATGAAGGTGTAGTAAGAAAAGAGCCATCGGAAAAATTTAAAATTG
TAGCTCAAAATATTGGCTTTATCGTGCTTTTAACTTTGATGGTATTCGTG
ATTTTCAATGACATAACGAAACTTTTTTAAATAGCCCCAGATCCGGAATC
AAATCAAGTTGGAATTGGTATTCCTACTTTAGAAATGGTAGGAGGCGAAC
ATGTGAGCCTTGGTCTTTTTGCTTCAATTGGTGAAGGATGGAATCAAACT
TGGGAACAGACTTCAGGTATTTTAGGAGGTTTTTCAAGAATGATTTCGGG
TGATATTTCCGTAAGGCAAAATCTTGGAGGTCCTATAGCAATTGCAAGCT
TTACTAAACAAGCCACCGATCAGGCTGGGTGGACTGGTTTTTGGCAAATT
ACAGCTCTTTTAAGTATTACACTCGCCATTATGAATATTCTTCCAATTCC
AGCATTAGATGGAGGACACTTGGTATTTTTGATTTATGAAGGTGTAGTAA
GAAAAGAGCCATCGGAAAAATTTAAAATTGTAGCTCAAAATATTGGCTTT
ATCGTGCTTTTAACTTTGATGGTATTCGTGATTTTCAATGACATAACGAA
ACTTTTTTAA
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