mRNA_M-pyrifera_M_contig115888.3301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115888.3301.1
Unique NamemRNA_M-pyrifera_M_contig115888.3301.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115888.3301.1 vs. uniprot
Match: A0A8C4Q8U7_EPTBU (Uncharacterized protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4Q8U7_EPTBU)

HSP 1 Score: 52.4 bits (124), Expect = 4.580e-5
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 1 
Query:  112 CIFWDTSVREYRSNGCHVENVSAAGIW-CACDHLT------DFRGRFENLAVENEAIIVQVKEPITKKDLHQNPGVFILMGSLVLLTFLLFLCVSRAD 384
            C+FW  + +++R +GC VEN S + +  C+CDHLT      DF G+ +N   E ++I+  +         H   G+  +  +L LLT+L FL   R D
Sbjct:  939 CVFWSLTEKDWREDGCRVENESNSEMTVCSCDHLTHFAVLLDFMGKSDNYTKEQKSILTIIT--------HIGCGISAIFLALTLLTYL-FLNKLRKD 1027
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115888.3301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8C4Q8U7_EPTBU4.580e-533.67Uncharacterized protein n=1 Tax=Eptatretus burgeri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115888contigM-pyrifera_M_contig115888:40..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.5575562-CDS-M-pyrifera_M_contig115888:39..4681622815675.5575562-CDS-M-pyrifera_M_contig115888:39..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115888 40..468 +
1692277516.468615-CDS-M-pyrifera_M_contig115888:39..4681692277516.468615-CDS-M-pyrifera_M_contig115888:39..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115888 40..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115888.3301.1prot_M-pyrifera_M_contig115888.3301.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115888 40..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115888.3301.1

>prot_M-pyrifera_M_contig115888.3301.1 ID=prot_M-pyrifera_M_contig115888.3301.1|Name=mRNA_M-pyrifera_M_contig115888.3301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MPTSDSTLIAPLIASLVAPDAAKSGGAGSVMTVATASCIFWDTSVREYRS
NGCHVENVSAAGIWCACDHLTDFRGRFENLAVENEAIIVQVKEPITKKDL
HQNPGVFILMGSLVLLTFLLFLCVSRADAVQHRRFAQALMEDS
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mRNA from alignment at M-pyrifera_M_contig115888:40..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115888.3301.1 ID=mRNA_M-pyrifera_M_contig115888.3301.1|Name=mRNA_M-pyrifera_M_contig115888.3301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig115888:40..468+ (Macrocystis pyrifera P11B4 male)
ATGCCAACAAGTGACTCTACCCTCATTGCGCCACTCATCGCGTCTCTTGT
GGCACCTGACGCCGCAAAGAGTGGGGGAGCCGGGAGCGTGATGACTGTAG
CAACAGCAAGCTGTATTTTTTGGGACACATCCGTCCGTGAGTACCGATCG
AATGGGTGTCATGTGGAAAACGTGAGTGCGGCAGGAATCTGGTGCGCGTG
TGACCACCTCACAGACTTTCGAGGACGGTTCGAAAACCTTGCAGTGGAGA
ACGAAGCCATCATCGTGCAGGTCAAAGAGCCGATTACGAAGAAAGACCTG
CACCAAAACCCTGGCGTGTTCATTCTCATGGGATCCTTAGTCCTCCTCAC
GTTTCTCCTCTTCCTCTGTGTGTCTAGAGCTGACGCTGTGCAACACCGAC
GCTTCGCACAAGCCCTCATGGAAGACTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115888:40..468+

>mRNA_M-pyrifera_M_contig115888.3301.1 ID=mRNA_M-pyrifera_M_contig115888.3301.1|Name=mRNA_M-pyrifera_M_contig115888.3301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig115888:40..468+ (Macrocystis pyrifera P11B4 male)
ATGCCAACAAGTGACTCTACCCTCATTGCGCCACTCATCGCGTCTCTTGT
GGCACCTGACGCCGCAAAGAGTGGGGGAGCCGGGAGCGTGATGACTGTAG
CAACAGCAAGCTGTATTTTTTGGGACACATCCGTCCGTGAGTACCGATCG
AATGGGTGTCATGTGGAAAACGTGAGTGCGGCAGGAATCTGGTGCGCGTG
TGACCACCTCACAGACTTTCGAGGACGGTTCGAAAACCTTGCAGTGGAGA
ACGAAGCCATCATCGTGCAGGTCAAAGAGCCGATTACGAAGAAAGACCTG
CACCAAAACCCTGGCGTGTTCATTCTCATGGGATCCTTAGTCCTCCTCAC
GTTTCTCCTCTTCCTCTGTGTGTCTAGAGCTGACGCTGTGCAACACCGAC
GCTTCGCACAAGCCCTCATGGAAGACTCTATGCCAACAAGTGACTCTACC
CTCATTGCGCCACTCATCGCGTCTCTTGTGGCACCTGACGCCGCAAAGAG
TGGGGGAGCCGGGAGCGTGATGACTGTAGCAACAGCAAGCTGTATTTTTT
GGGACACATCCGTCCGTGAGTACCGATCGAATGGGTGTCATGTGGAAAAC
GTGAGTGCGGCAGGAATCTGGTGCGCGTGTGACCACCTCACAGACTTTCG
AGGACGGTTCGAAAACCTTGCAGTGGAGAACGAAGCCATCATCGTGCAGG
TCAAAGAGCCGATTACGAAGAAAGACCTGCACCAAAACCCTGGCGTGTTC
ATTCTCATGGGATCCTTAGTCCTCCTCACGTTTCTCCTCTTCCTCTGTGT
GTCTAGAGCTGACGCTGTGCAACACCGACGCTTCGCACAAGCCCTCATGG
AAGACTCT
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