mRNA_M-pyrifera_M_contig115884.3299.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115884.3299.1
Unique NamemRNA_M-pyrifera_M_contig115884.3299.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A2E7D0D1_9PLAN (HlyD_D23 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D0D1_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 2.720e-23
Identity = 56/162 (34.57%), Postives = 96/162 (59.26%), Query Frame = 1
Query:   13 SSATVTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLIVQLRDDVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPYVKKQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            SS  V +  C VK ++ +  +++  GII  +  +EG+ ++ GD  VQ+RD+V +A+L +    A   + I  +EK  + A++ YE A++AN+  DN+ PA E+  L+L     +LQ+ QA     ++   +K+    L +Y V A F+G+VT+VHK +GE+V
Sbjct:   51 SSRQVVIRECRVKLIDEAVLSSEQTGIIEIIDAQEGETLELGDRAVQIRDNVIRASLEVAEKLASDTVEIDFSEKASQLAQVRYEQALKANQQLDNTIPALELQELRLNVQKTLLQIDQARRNQEVAKLRRKETFETLQTYKVTAPFAGVVTKVHKKVGESV 212          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A1I3G5U8_9PLAN (HlyD family secretion protein n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3G5U8_9PLAN)

HSP 1 Score: 98.6 bits (244), Expect = 8.210e-22
Identity = 57/152 (37.50%), Postives = 97/152 (63.82%), Query Frame = 1
Query:   52 FVNHSTYATQTPGIIAELPFEEGDIVQAGDLIVQLRDDVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNS---FPASEVDRLKLIFDARILQVTQAEEEFNLSPYVKKQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            FV+  T++    G+IA++P +EG+ ++AG  +VQL+D+V +A L +  A+A+   PI +A K  E A++ YE+++ AN+   +S   +P + + RLKL  +A  L+V +AE EF ++   + QA AE+ S+ +    +G+VT+V KH GE V
Sbjct:   36 FVDRVTFSVDRTGVIAKVP-KEGEQLEAGQTVVQLKDEVPRAMLAVAEAKAQNDAPIEVASKTAEYARLDYEASLEANRKAGSSVAAYPPTHIARLKLNMEASDLKVKEAETEFEINRLSRDQAIAEMESFRIVTGINGVVTQVFKHPGEGV 186          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: UPI0014226596 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014226596)

HSP 1 Score: 81.6 bits (200), Expect = 1.670e-15
Identity = 47/142 (33.10%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   73 ATQTPGIIAELPFEEGDIVQAGDLIVQLRDDVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPYVKKQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            A   PG++A +  EEG +V+ G+L+V+LR ++ +A L +   +A   + +  A+ + + ++   + A  AN+    + P  E+DRL+   D  +LQ+ QAE E  L+    K+A+A + +  + A F+G+VT V K +GEAV
Sbjct:   53 AADQPGVLAVVVPEEGQLVEKGELLVELRAEILKAALAVAQEEASSDVNLRFAQAQLKVSQAELDKAEDANRRVIGTVPLVELDRLRFTRDRAMLQIEQAEHEQVLNNLRVKEAKARVEALQIRAPFTGVVTEVTKSVGEAV 194          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A1G3AK90_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RBG_16_64_12 TaxID=1801971 RepID=A0A1G3AK90_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 8.870e-9
Identity = 43/172 (25.00%), Postives = 86/172 (50.00%), Query Frame = 1
Query:   25 VTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLIVQLRD-------DVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPYVKK-------QAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            + + S  +K +       +  G++A +  EEG +V+ G+L+ Q+ D       D  +  L +    A+  +    A+K  E AK   + ++ + +++  S   SE+DRL+L+ +  +L+V QAE EF ++ + ++        AE ++    + A   G+V +V++  GE V
Sbjct:   26 IEIPSALIKPIEQVDVPAREAGVLATVNVEEGQMVEEGELLAQIVDTEARIARDRVKGELEIARRNAENDVNTRFAKKSVEVAKAELKRSMESIETYAKSISDSEMDRLRLVVERAVLEVEQAEREFEIAGFTREIKESDHQAAEEKVERCRIAAPLGGVVVQVNRRRGEWV 197          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A2G2KP11_9BACT (HlyD_D23 domain-containing protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2KP11_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 3.200e-8
Identity = 44/170 (25.88%), Postives = 86/170 (50.59%), Query Frame = 1
Query:   25 VTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLI-------VQLRDDVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPYVK--KQA-----EAELLSYAVHAKFSGLVTRVHKHIGE 492
            + V+S  +K +       Q  GI+  +   EG +V+ G L+       ++L    A+A+  +   +A   + +   +K  E AK   + +  +N   +NS PA E+DRL+L+ + +IL++ QA E+  ++  +   KQA     E +L+ + + +  SG+V ++ +  GE
Sbjct:   27 IQVESTLLKIIEIVRVPAQESGILESVNVREGTVVEKGQLLAKIGSREIELALIKAKADYLISKREAANDISVRFIKKSTEVAKTELKRSEDSNAEVENSIPAIEIDRLRLLVEEKILEMEQALEKLEIAKLIAELKQADLRIVEEKLMKHQIISPISGMVVQLFQRTGE 196          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A3E0P7A2_9BACT (HlyD family efflux transporter periplasmic adaptor subunit n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0P7A2_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 6.310e-8
Identity = 50/174 (28.74%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   19 ATVTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLIVQLRD-----DVAQANLNLRAA--QAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPYVK-------KQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            A V V S  VK +       +  G++ ++   EG +V+ G  I ++ D     D   A L L AA   A+  + +  A K  E A    + AV++ +   +S   SE+D+L+L+ +  IL++ QAE EF+L+   +       + AE ++    + A  +G V+ V +H GE V
Sbjct:   25 AEVEVSSVLVKLIEQVEVPAREAGVLEQVDVREGQMVEEGAEIARIDDSAPRLDKRTAELELVAAAKMAENDVKVRYARKSAEVADAELQRAVKSKQRLPDSVTDSEMDQLRLMAEKTILEIEQAELEFDLAKTTRALKENDVQIAEHDISQRKITAPLAGFVSEVSRHRGEWV 198          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A6N6LD69_9PROT (Efflux RND transporter periplasmic adaptor subunit n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6N6LD69_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-7
Identity = 42/138 (30.43%), Postives = 68/138 (49.28%), Query Frame = 1
Query:   88 GIIAELPFEEGDIVQAGDLIVQLRDDVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNSF-PASEVDRLKLIFDARILQVTQAEEEFNLSPYVKKQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            G+IA +P E GDIVQAG ++V LRD V +A + +  ++A+    I  A+  R    +  E   RA       F  A  +D+ +      + ++ QA +   +S      A+A L    +H+ F G+VT  +  +GE V
Sbjct:   40 GVIAHIPVERGDIVQAGQVLVSLRDTVERAQIGIARSRAQTEADIRAAQANRV---LADERLKRARDLHQRQFISAQALDQAEAEHRVAVEKLAQARDFQQISQRELDLAQARLGERVLHSPFDGIVTDRYLSVGERV 174          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A0J1B3V9_RHOIS (Multidrug efflux pump n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B3V9_RHOIS)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-7
Identity = 48/172 (27.91%), Postives = 76/172 (44.19%), Query Frame = 1
Query:   25 VTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLIVQLRD-------DVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPY-------VKKQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            + +++     V     A    G +  L   EG  V  G+L+VQL D       + AQA     A Q+   +    AE+ RE      E ++ AN+ F NS  A+E+DRL+L+ D   L + QA +E  ++         + + AE  +  + + +  SG V  V    GE V
Sbjct:   52 IVIEAAQATLVTDLPLAAPVAGRVRSLSVVEGQQVSKGELLVQLDDRRAKAELEAAQAASQAAALQSTSDVDQRYAERTREVRMRELEQSLDANRRFQNSVTATEIDRLQLVIDQAGLSIEQAHKESEIAEANANEKQSLVRMAELRVAEHRLESPLSGSVAEVTVSPGEWV 223          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: A0A2G1WDM7_9BACT (Hemolysin D n=2 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1WDM7_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 6.190e-7
Identity = 51/175 (29.14%), Postives = 74/175 (42.29%), Query Frame = 1
Query:   16 SATVTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLIVQLRDDVAQANLNLRAAQAKMRLPIAI-------AEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPY-------VKKQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            SA + ++            A    G +  L   EG  V   DL+VQL D  A+A L    A AK     A        AE+ RE      E ++ ANK + NS  A+E+DRL+L+ D   L + QA +E  ++         + K AE +L  + + +   G V       GE V
Sbjct:   49 SAAIVIEGAQAMLATDLALAAPIAGRVTTLAVAEGQRVSENDLLVQLDDRRARAELAAAEAAAKAAELSAASDVDQRYAERTREVRMRELEQSIDANKRYKNSVTATEIDRLQLVIDQAGLSIEQARKELEVAEARASEKRSLLKMAELKLRDHRIGSPIVGSVAETMVSAGEWV 223          
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Match: M5RWB2_9BACT (Multidrug efflux pump n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5RWB2_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 8.550e-7
Identity = 49/173 (28.32%), Postives = 77/173 (44.51%), Query Frame = 1
Query:   22 TVTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLIVQLRDDVAQANL---NLRAAQAKMRLPIAI----AEKEREAAKIGYESAVRANKSFDNSFPASEVDRLKLIFDARILQVTQAEEEFNLSPY-------VKKQAEAELLSYAVHAKFSGLVTRVHKHIGEAV 498
            T+ ++      V   T A    G +  +   EG  V   D++VQL D  A+A L      A  AK+R    +    AE+ RE      E ++ ANK + NS  A+E+DRL+L+ D   L + QA +E  ++         + + A+  L  + V +   G V      +GE V
Sbjct:   56 TIEIEGAQTTLVTDLTLAAPISGRVMSVAVTEGQEVSKSDVLVQLDDRRAKAELAAAESAAMAAKLRSTSDVDQRYAERTREVRMRELEQSIDANKRYQNSVTATEIDRLQLVIDQAGLSIEQARKELEVAEAQADEKLSLVEMAKLRLSEHRVDSPVEGNVAETMVSVGEWV 228          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115884.3299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2E7D0D1_9PLAN2.720e-2334.57HlyD_D23 domain-containing protein n=1 Tax=Plancto... [more]
A0A1I3G5U8_9PLAN8.210e-2237.50HlyD family secretion protein n=1 Tax=Planctomicro... [more]
UPI00142265961.670e-1533.10efflux RND transporter periplasmic adaptor subunit... [more]
A0A1G3AK90_9BACT8.870e-925.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2G2KP11_9BACT3.200e-825.88HlyD_D23 domain-containing protein n=1 Tax=Blastop... [more]
A0A3E0P7A2_9BACT6.310e-828.74HlyD family efflux transporter periplasmic adaptor... [more]
A0A6N6LD69_9PROT1.220e-730.43Efflux RND transporter periplasmic adaptor subunit... [more]
A0A0J1B3V9_RHOIS3.330e-727.91Multidrug efflux pump n=1 Tax=Rhodopirellula islan... [more]
A0A2G1WDM7_9BACT6.190e-729.14Hemolysin D n=2 Tax=Rhodopirellula bahusiensis Tax... [more]
M5RWB2_9BACT8.550e-728.32Multidrug efflux pump n=2 Tax=Rhodopirellula TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115884contigM-pyrifera_M_contig115884:62..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.7
Seed ortholog evalue4.4e-14
Seed eggNOG ortholog1123242.JH636434_gene3819
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EggNOG OGs2J0RG@203682,COG0845@1,COG0845@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.4572792-CDS-M-pyrifera_M_contig115884:61..5591622815675.4572792-CDS-M-pyrifera_M_contig115884:61..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115884 62..559 +
1692277516.4024515-CDS-M-pyrifera_M_contig115884:61..5591692277516.4024515-CDS-M-pyrifera_M_contig115884:61..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115884 62..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115884.3299.1prot_M-pyrifera_M_contig115884.3299.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115884 62..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115884.3299.1

>prot_M-pyrifera_M_contig115884.3299.1 ID=prot_M-pyrifera_M_contig115884.3299.1|Name=mRNA_M-pyrifera_M_contig115884.3299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
PSSSSSATVTVDSCAVKFVNHSTYATQTPGIIAELPFEEGDIVQAGDLIV
QLRDDVAQANLNLRAAQAKMRLPIAIAEKEREAAKIGYESAVRANKSFDN
SFPASEVDRLKLIFDARILQVTQAEEEFNLSPYVKKQAEAELLSYAVHAK
FSGLVTRVHKHIGEAV
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mRNA from alignment at M-pyrifera_M_contig115884:62..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115884.3299.1 ID=mRNA_M-pyrifera_M_contig115884.3299.1|Name=mRNA_M-pyrifera_M_contig115884.3299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig115884:62..559+ (Macrocystis pyrifera P11B4 male)
CCGTCTTCGTCGAGTTCAGCGACTGTCACCGTCGATTCCTGTGCGGTCAA GTTTGTCAATCACAGCACCTACGCAACCCAAACGCCTGGCATCATTGCAG AGTTGCCCTTTGAAGAGGGCGACATCGTCCAGGCAGGCGACCTGATCGTC CAACTCCGCGACGATGTGGCTCAGGCGAACCTCAACCTGAGGGCAGCTCA AGCCAAAATGCGGTTGCCCATTGCGATCGCCGAGAAGGAACGCGAAGCTG CGAAAATCGGATATGAGTCCGCCGTCCGTGCGAACAAATCCTTTGACAAC TCTTTTCCTGCGTCTGAAGTGGATCGCCTCAAACTCATTTTCGACGCCCG AATACTCCAAGTCACACAGGCTGAGGAAGAGTTTAATCTCTCTCCGTATG TGAAGAAGCAAGCAGAGGCAGAGTTGCTCAGCTATGCGGTGCACGCGAAA TTCAGCGGTCTTGTCACGCGTGTGCACAAGCATATCGGCGAGGCGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115884:62..559+

>mRNA_M-pyrifera_M_contig115884.3299.1 ID=mRNA_M-pyrifera_M_contig115884.3299.1|Name=mRNA_M-pyrifera_M_contig115884.3299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig115884:62..559+ (Macrocystis pyrifera P11B4 male)
CCGTCTTCGTCGAGTTCAGCGACTGTCACCGTCGATTCCTGTGCGGTCAA
GTTTGTCAATCACAGCACCTACGCAACCCAAACGCCTGGCATCATTGCAG
AGTTGCCCTTTGAAGAGGGCGACATCGTCCAGGCAGGCGACCTGATCGTC
CAACTCCGCGACGATGTGGCTCAGGCGAACCTCAACCTGAGGGCAGCTCA
AGCCAAAATGCGGTTGCCCATTGCGATCGCCGAGAAGGAACGCGAAGCTG
CGAAAATCGGATATGAGTCCGCCGTCCGTGCGAACAAATCCTTTGACAAC
TCTTTTCCTGCGTCTGAAGTGGATCGCCTCAAACTCATTTTCGACGCCCG
AATACTCCAAGTCACACAGGCTGAGGAAGAGTTTAATCTCTCTCCGTATG
TGAAGAAGCAAGCAGAGGCAGAGTTGCTCAGCTATGCGGTGCACGCGAAA
TTCAGCGGTCTTGTCACGCGTGTGCACAAGCATATCGGCGAGGCGGTGCC
GTCTTCGTCGAGTTCAGCGACTGTCACCGTCGATTCCTGTGCGGTCAAGT
TTGTCAATCACAGCACCTACGCAACCCAAACGCCTGGCATCATTGCAGAG
TTGCCCTTTGAAGAGGGCGACATCGTCCAGGCAGGCGACCTGATCGTCCA
ACTCCGCGACGATGTGGCTCAGGCGAACCTCAACCTGAGGGCAGCTCAAG
CCAAAATGCGGTTGCCCATTGCGATCGCCGAGAAGGAACGCGAAGCTGCG
AAAATCGGATATGAGTCCGCCGTCCGTGCGAACAAATCCTTTGACAACTC
TTTTCCTGCGTCTGAAGTGGATCGCCTCAAACTCATTTTCGACGCCCGAA
TACTCCAAGTCACACAGGCTGAGGAAGAGTTTAATCTCTCTCCGTATGTG
AAGAAGCAAGCAGAGGCAGAGTTGCTCAGCTATGCGGTGCACGCGAAATT
CAGCGGTCTTGTCACGCGTGTGCACAAGCATATCGGCGAGGCGGTG
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