prot_M-pyrifera_M_contig115874.3297.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig115874.3297.1
Unique Nameprot_M-pyrifera_M_contig115874.3297.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length60
Homology
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A3A9JBK8_9PROT (DNA-binding protein n=1 Tax=Roseomonas wenyumeiae TaxID=2478470 RepID=A0A3A9JBK8_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 4.170e-10
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    2 PTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRRG 59
            P+      T+   +A LAVS +++RRWI +++L  HRLGR +RIAE DL+AF  R+RG
Sbjct:    5 PSRSAPLLTLAAAAARLAVSTKTLRRWIAAEQLRVHRLGRQIRIAEEDLQAFLARQRG 62          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A7Z9KFP6_9PROT (DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Z9KFP6_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 7.960e-9
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 0
Query:   10 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF-RKRRRG 59
            T+KQ +  L VS++++RRWI + +L+AHRLGR  RI+E+DL+ F R RR+G
Sbjct:   18 TIKQAAEHLQVSSKTLRRWIDTGDLIAHRLGRQWRISETDLQTFIRMRRQG 68          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI0018DF5014 (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas sp. KE0001 TaxID=2479201 RepID=UPI0018DF5014)

HSP 1 Score: 53.1 bits (126), Expect = 5.660e-8
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:   10 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 58
            T+ +++A LAVS +++RRWI  ++L  HRLGR +R+AE DL+ F   RR
Sbjct:   13 TLVEVAARLAVSTKTLRRWIALEQLRIHRLGRQIRVAEEDLQTFLASRR 61          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI001A95AB19 (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas haemaphysalidis TaxID=2768162 RepID=UPI001A95AB19)

HSP 1 Score: 50.1 bits (118), Expect = 8.530e-7
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0
Query:   10 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 53
            TV Q++  LA+S ++VRRWI    L AH++GR +RI+E DL+ F
Sbjct:    9 TVDQVAEHLAISTKTVRRWIADGRLNAHQIGRQLRISERDLQVF 52          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A1G7FYI4_9RHOB (DNA binding domain-containing protein, excisionase family n=1 Tax=Ruegeria marina TaxID=639004 RepID=A0A1G7FYI4_9RHOB)

HSP 1 Score: 50.1 bits (118), Expect = 1.120e-6
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    7 TFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEA 52
            TF +VK+++A   V  ++VRRWIQS EL A RLGR  RIA ++L+A
Sbjct:   11 TFLSVKEVAALFRVCPKTVRRWIQSGELPATRLGRDWRIARNNLKA 56          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A4S4A967_9HYPH (Helix-turn-helix domain-containing protein n=2 Tax=Mesorhizobium composti TaxID=2675109 RepID=A0A4S4A967_9HYPH)

HSP 1 Score: 50.4 bits (119), Expect = 1.360e-6
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    6 ETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 58
            E FFT+KQ++    VS R V R++ S  LVAH+ GRS+RIAE ++  F  R R
Sbjct:   42 EQFFTIKQLAKRWQVSERQVHRFVHSGVLVAHKFGRSLRIAEDNVLLFELRSR 94          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A0M5IIH1_SPHS1 (DNA binding domain protein, excisionase family n=1 Tax=Sphingopyxis sp. (strain 113P3) TaxID=292913 RepID=A0A0M5IIH1_SPHS1)

HSP 1 Score: 48.5 bits (114), Expect = 5.830e-6
Identity = 21/56 (37.50%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    1 MPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKR 56
            +P+  + F+TV +++   ++S R +RR I + ELVAHR+GR+VR++ +++  F  R
Sbjct:   21 LPSGRKAFYTVAELAVRWSLSERHIRRLIDNGELVAHRIGRAVRVSAANVALFEAR 76          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI001C49D900 (helix-turn-helix domain-containing protein n=1 Tax=Sinirhodobacter sp. B57 TaxID=2851012 RepID=UPI001C49D900)

HSP 1 Score: 47.4 bits (111), Expect = 1.130e-5
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 0
Query:    3 TNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 53
            T PE   T+ + +  L VS +S+RRWI+S EL A +LG   RI   DL+ F
Sbjct:    7 TTPEQLLTIPEAAELLRVSIKSIRRWIESGELSAAKLGNQWRIRPQDLDRF 57          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: E3I1L0_RHOVT (DNA binding domain protein, excisionase family n=4 Tax=Rhodomicrobium TaxID=1068 RepID=E3I1L0_RHOVT)

HSP 1 Score: 47.0 bits (110), Expect = 1.720e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0
Query:    8 FFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 58
            FFTV +++A   +SAR VRR I+S  L AHR G+S+RIA   +  +   RR
Sbjct:   16 FFTVNELAARWGMSARHVRREIESGALQAHRFGKSIRIAAESVAIYEATRR 66          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A7V9N1E8_9CHLR (Helix-turn-helix domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9N1E8_9CHLR)

HSP 1 Score: 47.8 bits (112), Expect = 6.230e-5
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:    4 NPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 53
            N    FTVK+ +  L VS  +VRR+I S EL AHR+GR +R+   D+E F
Sbjct:    5 NSMELFTVKETAQMLRVSPITVRRYIASGELSAHRVGRGIRVKRQDVEDF 54          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A3A9JBK8_9PROT4.170e-1048.28DNA-binding protein n=1 Tax=Roseomonas wenyumeiae ... [more]
A0A7Z9KFP6_9PROT7.960e-952.94DNA-binding protein n=1 Tax=Alphaproteobacteria ba... [more]
UPI0018DF50145.660e-848.98helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001A95AB198.530e-750.00helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A1G7FYI4_9RHOB1.120e-654.35DNA binding domain-containing protein, excisionase... [more]
A0A4S4A967_9HYPH1.360e-649.06Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A0M5IIH1_SPHS15.830e-637.50DNA binding domain protein, excisionase family n=1... [more]
UPI001C49D9001.130e-545.10helix-turn-helix domain-containing protein n=1 Tax... [more]
E3I1L0_RHOVT1.720e-547.06DNA binding domain protein, excisionase family n=4... [more]
A0A7V9N1E8_9CHLR6.230e-548.00Helix-turn-helix domain-containing protein n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010093SinI-like, DNA-binding domainTIGRFAMTIGR01764TIGR01764coord: 8..54
e-value: 5.5E-13
score: 47.1
NoneNo IPR availableGENE3D1.10.1660.10coord: 4..57
e-value: 6.8E-11
score: 43.6
IPR041657Helix-turn-helix domain, group 17PFAMPF12728HTH_17coord: 9..58
e-value: 1.9E-13
score: 50.4
IPR009061Putative DNA-binding domain superfamilySUPERFAMILY46955Putative DNA-binding domaincoord: 8..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115874contigM-pyrifera_M_contig115874:19..198 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115874.3297.1mRNA_M-pyrifera_M_contig115874.3297.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig115874 10..198 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig115874.3297.1 ID=prot_M-pyrifera_M_contig115874.3297.1|Name=mRNA_M-pyrifera_M_contig115874.3297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDL
EAFRKRRRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010093SinI_DNA-bd
IPR041657HTH_17
IPR009061DNA-bd_dom_put_sf