mRNA_M-pyrifera_M_contig11585.3287.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11585.3287.1
Unique NamemRNA_M-pyrifera_M_contig11585.3287.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: D7G2G1_ECTSI (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G1_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 4.370e-68
Identity = 110/150 (73.33%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    7 RIYTVACALMLAGARGFVVNPTLRAPCANRGIGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKNE 456
            R   VACAL+LAGAR FVVNPTL    A  G+G    GR  S   AAPLEG+HGMRSRFLPVDQ+DDE FAPRIVQVAGA+P +TVAD+MAVGF+P  EMGMW YDFSDP GPQLGTVAVPGGE V NM+EPVAIV PN DLNIQMP +E
Sbjct:    7 RTCVVACALLLAGARAFVVNPTLLPSRAPGGVGAS--GRTGSLSMAAPLEGSHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDE 154          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A6H5JHR7_9PHAE (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 8.210e-67
Identity = 110/153 (71.90%), Postives = 119/153 (77.78%), Query Frame = 1
Query:    7 RIYTVACALMLAGARGFVVNPTL---RAPCANRGIGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKNE 456
            R   VACAL+LAGAR FVVNPTL   RAP         T+GR  S   AAPLEGAHGMRSRFLPVDQ+DDE FAPRIVQVAG +P +TVAD+MAVGF+P  EMGMW YDFSDP GPQLGTVAVPGGE V  M+EPVAIV PN DLNIQMP +E
Sbjct:    7 RTCVVACALLLAGARAFVVNPTLLSSRAPGGGSAAAVGTSGRTGSLSMAAPLEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGVLPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDE 159          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: D7G2G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G3_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.810e-32
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1
Query:  223 RIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKNE 456
            R+ QVAGA+P +TVA +MAVGF+P  EMGMW YDFSDP GPQLGTVAVPGGE V NM+EPVAIV PN DLNIQMP +E
Sbjct:    6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDE 83          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A836C9L5_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.960e-29
Identity = 65/142 (45.77%), Postives = 84/142 (59.15%), Query Frame = 1
Query:   31 LMLAGARGFVVNPTLRAPCANRGIGTETAGRRSSSIAAAPLE-GAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKN 453
            L +  A GFV  P LRA C      T T G RS+ + A   + G HG  SRFLP+ Q+      PR V +AGA PGLT  D+ A     PAE G W YDF+DP GPQ+GTVA+PGG+ V ++ +PV IV  +  L I +P++
Sbjct:   11 LYVDAALGFVPAPALRA-CRQARQATATCGSRSTQMVAQMEQTGLHGTGSRFLPIVQIGAREHYPRTVCIAGAYPGLTAEDIAAPTSGEPAEQGTWQYDFTDPEGPQMGTVALPGGDTVTDLIDPVIIVAASDSLGISLPQD 151          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S3LGB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGB5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.840e-26
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  100 IGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
            I T+      S++A +  +  HG  + FLP+ QL+ + FAPRIVQ+AG  PGL+ AD MAV      + G W YDFSDP GPQLGTVA+ G ++V +  +PV I+  +  + I++PK
Sbjct:   32 IATDITRLHQSALAGSARK--HGQDACFLPIKQLEQDYFAPRIVQIAGGYPGLSKADFMAVTSEQAPDQGQWTYDFSDPDGPQLGTVALEGSQIVHDCEDPVVIIAEHPSIGIELPK 146          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A1E7FB03_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB03_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.180e-26
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   58 VVNPTLRAPCANRGIGTETAGRRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKN 453
            V+ P L    A+R I       + S + AA     HG  S +LP+ QLD + + PRIVQ+AGA PG+T  +  A    PP E G W+YDFSDP GPQLGTVA+ G  +V    +PV I+  +T L+I +P++
Sbjct:   10 VLTPALAWIPASRSISKN----KISQLNAASYGSLHGDNSCYLPLKQLDQDYYGPRIVQIAGAYPGITREEFYATQSEPPPEPGQWNYDFSDPDGPQLGTVAIEGSNVVAVCEDPVVIIAEHTSLSIPLPES 137          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S2FVK7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVK7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.080e-25
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  121 RRSSSIAAAPLEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPKN 453
            R + +++  P  G HG  S+F+P+ QLD E +APR VQVAG +PGLT  +  A   +P A  G W +DFSDP GPQ+GT+A PG   VQ   +PVAIV  +  L+I +  N
Sbjct:   39 RPAPTMSEGPPMGQHGTGSKFMPLTQLDSEEYAPRTVQVAGVLPGLTKEEFYAPQSAPAAPPGQWQFDFSDPEGPQMGTIAFPGSANVQACEDPVAIVTNSAHLHISLANN 149          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: B7FTB2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTB2_PHATC)

HSP 1 Score: 105 bits (261), Expect = 2.170e-25
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  163 HGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
            HG  S FLP+ QLD + +APRIVQ+AGA PGLT  +   V     AE+G W YDFSDP GPQ+GTVA+ G ELV    +PVAI+  ++ + + +PK
Sbjct:   20 HGQNSCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPK 115          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S2YFZ8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFZ8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.000e-25
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  148 PLEGA---HGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
            PLE     HG  + F+P+ QLD + + PRIVQ+AGA PGLT  + M+V   P  E G W YDFSDP GPQLGTVA+PG E+V    +PV I+  +  + + +PK
Sbjct:   32 PLEAEPKIHGEGACFMPLKQLDQDHYNPRIVQIAGAYPGLTKEEYMSVTSEPSPERGQWTYDFSDPDGPQLGTVALPGSEIVHFAEDPVVIIAEHPSVGVDLPK 135          
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Match: A0A7S3PYS7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYS7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.530e-24
Identity = 45/96 (46.88%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  163 HGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPAEMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK 450
            HG  S F+P++Q+D+E FAPRI+Q+AG  PG+T  ++++V    PAE G W YDFSDP GPQ+GTVA+PG E++    +P  I+  +  L + +P+
Sbjct:   46 HGESSCFMPLEQVDEEYFAPRIIQIAGMYPGVTKEEILSVTSEQPAEKGQWAYDFSDPDGPQMGTVALPGCEIIDLCEDPAVIIAEHFALGVPLPE 141          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11585.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G2G1_ECTSI4.370e-6873.33RuBisCo_chap_C domain-containing protein n=1 Tax=E... [more]
A0A6H5JHR7_9PHAE8.210e-6771.90RuBisCo_chap_C domain-containing protein n=1 Tax=E... [more]
D7G2G3_ECTSI6.810e-3275.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9L5_9STRA3.960e-2945.77RuBisCo_chap_C domain-containing protein n=1 Tax=T... [more]
A0A7S3LGB5_9STRA2.840e-2644.44Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1E7FB03_9STRA6.180e-2643.18RuBisCo_chap_C domain-containing protein n=1 Tax=F... [more]
A0A7S2FVK7_9STRA1.080e-2546.85Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B7FTB2_PHATC2.170e-2552.08Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2YFZ8_9STRA7.000e-2549.04Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3PYS7_9STRA1.530e-2446.88Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11585contigM-pyrifera_M_contig11585:5174..8244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue2e-53
Seed eggNOG ortholog2880.D7G2G1
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E2ES@1,2S9NI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size465
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11585.3287.1prot_M-pyrifera_M_contig11585.3287.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11585 5174..8244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.978182-CDS-M-pyrifera_M_contig11585:5173..53111622815674.978182-CDS-M-pyrifera_M_contig11585:5173..5311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11585 5174..5311 +
1692277516.207158-CDS-M-pyrifera_M_contig11585:5173..53111692277516.207158-CDS-M-pyrifera_M_contig11585:5173..5311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11585 5174..5311 +
1622815674.992547-CDS-M-pyrifera_M_contig11585:6840..70501622815674.992547-CDS-M-pyrifera_M_contig11585:6840..7050Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11585 6841..7050 +
1692277516.2166004-CDS-M-pyrifera_M_contig11585:6840..70501692277516.2166004-CDS-M-pyrifera_M_contig11585:6840..7050Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11585 6841..7050 +
1622815675.006208-CDS-M-pyrifera_M_contig11585:8127..82441622815675.006208-CDS-M-pyrifera_M_contig11585:8127..8244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11585 8128..8244 +
1692277516.2243586-CDS-M-pyrifera_M_contig11585:8127..82441692277516.2243586-CDS-M-pyrifera_M_contig11585:8127..8244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11585 8128..8244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11585.3287.1

>prot_M-pyrifera_M_contig11585.3287.1 ID=prot_M-pyrifera_M_contig11585.3287.1|Name=mRNA_M-pyrifera_M_contig11585.3287.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MPRIYTVACALMLAGARGFVVNPTLRAPCANRGIGTETAGRRSSSIAAAP
LEGAHGMRSRFLPVDQLDDETFAPRIVQVAGAMPGLTVADLMAVGFSPPA
EMGMWHYDFSDPTGPQLGTVAVPGGELVQNMREPVAIVMPNTDLNIQMPK
NEVR*
back to top

mRNA from alignment at M-pyrifera_M_contig11585:5174..8244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11585.3287.1 ID=mRNA_M-pyrifera_M_contig11585.3287.1|Name=mRNA_M-pyrifera_M_contig11585.3287.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3071bp|location=Sequence derived from alignment at M-pyrifera_M_contig11585:5174..8244+ (Macrocystis pyrifera P11B4 male)
ATGCCTCGAATATACACGGTTGCGTGCGCCTTGATGCTGGCGGGGGCCAG AGGTTTCGTGGTGAATCCAACGTTGCGTGCGCCTTGCGCAAACAGAGGGA TCGGCACAGAGACCGCTGGTCGACGGAGCTCGTCCATCGTGAGTGGTCGC ATATACCGGTACTCTGGCCGAAGGTGTTGCCGTCCTTCCGGTGGGGCTCT GTAACTACCTTAGCGCTCTGGAATGGACAGAGAAGGCTGTTCTGTTTTGA TCCGTTGATGGTGATCGACTGCTGTTCCGAGCTCCTGGACTCCTGGATAA GGCTCGTAGGTGGCATGTTTGCGGCTGTGCGCTTTCGCCCATCAAGCAAC CAAGACTCTGTCATATGCTGGTATTATTAATAATAGTAGTACTACACCAG GTACAGGAAGTACCAGGTGGTTCGTTATCCGACATGTTGGTATGGCATCA TGTGTAAACATGAAAACAGGGGGAACACGTGTTCGTCATTGATCAGTGAG GTGCGGTACTGCCACTTCGCTCTGCGTGGGCGCCCGAATACAGGCAGATG TTGATGTTGTACGTAACACCCCCGGCGTGAGGGTATACTACTAATACTGC TGTCTCACATACAAGCCCTCATGAGTATAGGGTTAAACAATGAGCACTAC CCTGTACGGCACAGTACAGAGTAACAGGAGTATCGTATTTCCCCCCCCGC CTCTTGCTCGTCCCGGCCGGCCGCCGCTCGTGTCAACCCCCCCCCCCTGC TCGCCGGGCTGTGCCGAAAAATCACCTCTAGCTATCTATTAGCTTCTCTC ACACAATCGCAAGGGTCGCATGTCTACGTTGAAGGCATGTTTCCCATCTG AATTTGTGTGCGTGTATGCGATCCGTGCTTTGACTTGTGTCGAGAAAATG TTTGCATTCAGGTGACGAACAGCGGTACGTATACGAGTACAGCAGTAATG GGTCTCTATAGTGCCGGTTGCCCGCTTGTCCAACGGGACCCACCAGTGCC ACAATGTGCGGAGTAGCGCCGGTTCCCGCCATAGTACCGGTATTGTAGGC AGGCGCATGTTCGTAGCCTCAGGCAACGGTAGCCCATACTGCATGGCTGT CTATGGATGGATGTTTCAGGTCGTGTACTATTGGTCTCCCACAGGGTGGG GGCAGAGAAGAAGTGAGCCTCGTGCGTCACCACTTACAACATCCAGCACA ACAAGCAGCGTCCGTGCCGGTTATTTACTCCTGGAGAGAGACAAGCTCTG CGCTCACAAAACTACGCTCAGAGATACTATTATACATCATTTTGCAGTAT TTAAGCAGAGTAGACAATGCAATGCCGTGTCATCCTACTGGATACGACAG GCACGACATACACATTCCATGAAAGAGAGAAAAACGGTATGCACGAGTGT GATGGTGACCAGGGTTTTGCATCGGCTCCACTACTGTAGGACAGCTTTTA TCCTCGTCCGTCGTGCGGCATGACTATTCCCCTCGCCAAAACCTAGCCCC GCAGTCCGTTCCCCTTATTCCCCCCTCGCTTCCCACCTCGGTACTTACAA ACATATCCATGCGTGCGAACCTACTACCTTCCTTCCCTCCCCCCCCCCTC CCCCACGAGCCGTCCACTCCTTCCAATGCCTCCATTCCCTCCGCTCTCTC CCTTCACTGACCACCAGGCGGCGGCGCCGCTGGAGGGCGCTCACGGCATG AGGTCGCGCTTCCTTCCCGTGGACCAGCTCGACGACGAGACTTTCGCGCC TCGCATCGTCCAGGTCGCGGGCGCCATGCCCGGCCTCACCGTAGCGGACC TGATGGCGGTAGGCTTTTCACCGCCCGCGGAGATGGGCATGTGGCATTAC GACTTCTCGGATCCCACCGGCCCTCAGGTGACACAACGCGGGACGTGCGA GGGAGGCGCAGGGTCGGGTGGGGTGAGGCGGGGCGCGGTGGGAACGCACG CAGTACGTGAACGTTCCAGACTTTTTCCCCACTCGAAAAGACGATGGATA AGGAGATTAAGTGATTCGTGTGTGCTTTACAGCAGTAGCTTGAAGTTCGC GGGACGGGACTGGGCAGGACGTGGCGGTGGTACCTCTTTGGTGTGATTAT GGATGACAAAGAGCGGTGCCGCGGACGGTTTTGCTTTGTTGTTGTCGTGG CCCGCCAAATATACGTGACGTGTTCGAAGGAGAATGGGTAAAGGTGTTGT AAAGAGCTAAGAGCACTCGCTGGTTTTTGTTCGAGGTGTGGCGGCGTGGG GGGTGTTGGGAGTGGGGAGGGGGGGGGGGTGCCTCGTGTCTGGTGTCCTG ATATGCTTGCGTTTTTTAGTTTAGAGTGCTACTTACAGTTCTACTGTGTA GGAGGCGTTTTGCCTGTCGGGGGCAAGAAATTTGCATGGCGACCTAGATT AGAGTCGCCAAGTAAAAAAATCACGACTAATTTTGGAAATGAGAGCCCCA TCGCACCAAAAATCGGGAAAAGGTCACGCCGAATGCGCTGTTCTTGCTGT TTGGGTGTTTTTGTCGGCGCTGGACTGATGGCGTTCTAGTGTATAGCACC GACTATCGCATAGGCGTAGATTTGTTTTGCTCTCGAAGAAGGACGGGTTA GGCTGCATAAACATAACTAACTGCCACATGCGAAGCGGGATGGGAAACCG TGCCTCCCTGTGCACTCCGCGGTGAGATCGTCAACCGCTGTGCCGCGGCA CACCGCGTTGCGTACTAGAGAAGGAGGCGGTTAGGGAGGCTCCGGACCGT TTTTCGTTGCCTGGCGAATCCGCGGTGGGTTATGACGGTATCGGCCGGCG AGGGTTGCTCGCTGCGCGTTGCTCGCTGCTGCGGCGGTAACATTCACTTT TGCGACAGCTAGGCTCACACATGCTATATAAAAACCAAAACCGGCAACCG CTAACGCCCCCCCCCCGCCTCCCTCCGCTATCCACACAATGACGCCTCTT CCAGTTGGGCACGGTTGCCGTACCCGGCGGCGAGCTTGTGCAAAACATGC GGGAGCCGGTGGCGATTGTAATGCCGAACACTGACCTGAACATCCAGATG CCAAAAAACGAGGTGCGTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11585:5174..8244+

>mRNA_M-pyrifera_M_contig11585.3287.1 ID=mRNA_M-pyrifera_M_contig11585.3287.1|Name=mRNA_M-pyrifera_M_contig11585.3287.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig11585:5174..8244+ (Macrocystis pyrifera P11B4 male)
ATGCCTCGAATATACACGGTTGCGTGCGCCTTGATGCTGGCGGGGGCCAG
AGGTTTCGTGGTGAATCCAACGTTGCGTGCGCCTTGCGCAAACAGAGGGA
TCGGCACAGAGACCGCTGGTCGACGGAGCTCGTCCATCATGCCTCGAATA
TACACGGTTGCGTGCGCCTTGATGCTGGCGGGGGCCAGAGGTTTCGTGGT
GAATCCAACGTTGCGTGCGCCTTGCGCAAACAGAGGGATCGGCACAGAGA
CCGCTGGTCGACGGAGCTCGTCCATCGCGGCGGCGCCGCTGGAGGGCGCT
CACGGCATGAGGTCGCGCTTCCTTCCCGTGGACCAGCTCGACGACGAGAC
TTTCGCGCCTCGCATCGTCCAGGTCGCGGGCGCCATGCCCGGCCTCACCG
TAGCGGACCTGATGGCGGTAGGCTTTTCACCGCCCGCGGAGATGGGCATG
TGGCATTACGACTTCTCGGATCCCACCGGCCCTCAGGCGGCGGCGCCGCT
GGAGGGCGCTCACGGCATGAGGTCGCGCTTCCTTCCCGTGGACCAGCTCG
ACGACGAGACTTTCGCGCCTCGCATCGTCCAGGTCGCGGGCGCCATGCCC
GGCCTCACCGTAGCGGACCTGATGGCGGTAGGCTTTTCACCGCCCGCGGA
GATGGGCATGTGGCATTACGACTTCTCGGATCCCACCGGCCCTCAGTTGG
GCACGGTTGCCGTACCCGGCGGCGAGCTTGTGCAAAACATGCGGGAGCCG
GTGGCGATTGTAATGCCGAACACTGACCTGAACATCCAGATGCCAAAAAA
CGAGGTGCGTTGATTGGGCACGGTTGCCGTACCCGGCGGCGAGCTTGTGC
AAAACATGCGGGAGCCGGTGGCGATTGTAATGCCGAACACTGACCTGAAC
ATCCAGATGCCAAAAAACGAGGTGCGTTGA
back to top