mRNA_M-pyrifera_M_contig101583.328.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101583.328.1
Unique NamemRNA_M-pyrifera_M_contig101583.328.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101583.328.1 vs. uniprot
Match: A0A368KZ52_9BACT (Type I-U CRISPR-associated protein Cas7 n=1 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KZ52_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 2.200e-7
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 KCDVVYCSDQRDPLNTTHDEALAFATAADEAFGVRKKRTVDFDKKKAANDVKK 159
            +C  VY S +R P   +H++A+AFA  A EAFGV + +TV FDKKKA  D+KK
Sbjct:  300 ECCEVYRSGERKPFKLSHEDAIAFAQLAAEAFGVGENQTVAFDKKKAKADMKK 352
[Close]
BLAST of mRNA_M-pyrifera_M_contig101583.328.1 vs. uniprot
Match: A0A7X7F4T0_9BACT (Type I-U CRISPR-associated protein Cas7 n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7F4T0_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 6.970e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   13 VYCSDQRDPLNTTHDEALAFATAADEAFGVRKKRTVDFDKKKAANDVK 156
            VY + +R P   TH+ AL FAT A + FGV K R V+FDKK+A  DVK
Sbjct:  281 VYPTGERKPATITHEAALEFATQAAKEFGVGKDREVEFDKKRAEQDVK 328
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101583.328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A368KZ52_9BACT2.200e-752.83Type I-U CRISPR-associated protein Cas7 n=1 Tax=Bl... [more]
A0A7X7F4T0_9BACT6.970e-654.17Type I-U CRISPR-associated protein Cas7 n=1 Tax=Pi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101583contigM-pyrifera_M_contig101583:266..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.391288-CDS-M-pyrifera_M_contig101583:265..4331622815514.391288-CDS-M-pyrifera_M_contig101583:265..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101583 266..433 +
1692277445.5292847-CDS-M-pyrifera_M_contig101583:265..4331692277445.5292847-CDS-M-pyrifera_M_contig101583:265..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101583 266..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101583.328.1prot_M-pyrifera_M_contig101583.328.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101583 266..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101583.328.1

>prot_M-pyrifera_M_contig101583.328.1 ID=prot_M-pyrifera_M_contig101583.328.1|Name=mRNA_M-pyrifera_M_contig101583.328.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
KCDVVYCSDQRDPLNTTHDEALAFATAADEAFGVRKKRTVDFDKKKAAND
VKKND*
back to top

mRNA from alignment at M-pyrifera_M_contig101583:266..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101583.328.1 ID=mRNA_M-pyrifera_M_contig101583.328.1|Name=mRNA_M-pyrifera_M_contig101583.328.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig101583:266..433+ (Macrocystis pyrifera P11B4 male)
AAATGCGACGTGGTTTATTGCAGCGACCAACGCGATCCCTTGAATACGAC
CCATGACGAGGCGCTCGCGTTTGCCACCGCAGCCGACGAAGCGTTTGGTG
TGAGAAAAAAACGCACCGTCGACTTCGACAAAAAGAAGGCTGCCAATGAC
GTCAAGAAGAATGATTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101583:266..433+

>mRNA_M-pyrifera_M_contig101583.328.1 ID=mRNA_M-pyrifera_M_contig101583.328.1|Name=mRNA_M-pyrifera_M_contig101583.328.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig101583:266..433+ (Macrocystis pyrifera P11B4 male)
AAATGCGACGTGGTTTATTGCAGCGACCAACGCGATCCCTTGAATACGAC
CCATGACGAGGCGCTCGCGTTTGCCACCGCAGCCGACGAAGCGTTTGGTG
TGAGAAAAAAACGCACCGTCGACTTCGACAAAAAGAAGGCTGCCAATGAC
GTCAAGAAGAATGATTAGAAATGCGACGTGGTTTATTGCAGCGACCAACG
CGATCCCTTGAATACGACCCATGACGAGGCGCTCGCGTTTGCCACCGCAG
CCGACGAAGCGTTTGGTGTGAGAAAAAAACGCACCGTCGACTTCGACAAA
AAGAAGGCTGCCAATGACGTCAAGAAGAATGATTAG
back to top