mRNA_M-pyrifera_M_contig115819.3278.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115819.3278.1
Unique NamemRNA_M-pyrifera_M_contig115819.3278.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: A0A7S4HS80_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HS80_9EUKA)

HSP 1 Score: 196 bits (498), Expect = 1.540e-59
Identity = 83/156 (53.21%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   31 FDLVDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            ++L+DE K+A K + Y+ SG ++++QCE+V++ +FL+++RGG  I+LM+A+DFTASNG P+F TSLH+ NPY PN+Y++A+++VG+V ANYD DK FP FGFG K      VSHCFPLNGN  NP+V G++GI+Q Y S L+R+   GPT   E++
Sbjct:   96 YELIDE-KRASKKKKYQNSGRVQILQCEIVKDNTFLEFLRGGMNISLMIALDFTASNGDPDFTTSLHHRNPYSPNEYIRALQSVGQVFANYDSDKSFPVFGFGGKPTADSPVSHCFPLNGNEQNPQVQGIDGIIQTYCSALDRIVLQGPTIFKEII 250          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: UPI00077AA427 (copine-3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AA427)

HSP 1 Score: 191 bits (485), Expect = 4.780e-56
Identity = 84/149 (56.38%), Postives = 115/149 (77.18%), Query Frame = 1
Query:   52 KKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            KK  K + YK SG + + +CE+V+  SFLDYI+GGC++N  V IDFTASNG+P+ ATSLHY NPY PN+Y+QA+ AVGE++ +YD DK FPSFGFGAKIPP  QVSH FPLN N +NP   G+ G++QAY++ ++ ++  GPTN++ ++
Sbjct:  250 KKQTKKKGYKNSGLVYLTRCEVVKVASFLDYIQGGCQLNFTVGIDFTASNGEPKQATSLHYMNPYAPNEYMQALTAVGEIIQDYDSDKLFPSFGFGAKIPPMFQVSHQFPLNFNPSNPYCAGLPGLVQAYQTCIQSIQLFGPTNISPII 398          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: UPI001CF41BA5 (copine-3-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF41BA5)

HSP 1 Score: 191 bits (486), Expect = 3.130e-55
Identity = 85/149 (57.05%), Postives = 115/149 (77.18%), Query Frame = 1
Query:   52 KKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            KK  K + YK SG + + +CE+V+  SFLDYI+GGC++N  V IDFTASNG+P+ ATSLHY NPY PN+Y+QA+ AVGE++ +YD DK FPSFGFGAKIPP  QVSH FPLN N +NP   G+ G++QAY++ ++ V+  GPTN++ ++
Sbjct:  265 KKQTKKKGYKNSGLVYLTRCEVVKVASFLDYIQGGCQLNFTVGIDFTASNGEPKQATSLHYMNPYAPNEYMQALTAVGEIIQDYDSDKLFPSFGFGAKIPPMFQVSHQFPLNFNPSNPYCAGLPGLVQAYQTCIQSVQLFGPTNISPII 413          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: UPI000A2A63BA (copine-3 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A63BA)

HSP 1 Score: 190 bits (482), Expect = 1.080e-54
Identity = 87/170 (51.18%), Postives = 124/170 (72.94%), Query Frame = 1
Query:    1 LLQVGSNRGSFDL----VDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            L ++ S  G+ +L    ++E KK RK +SYK SG + +  C++++ PSFLD+I+GGC++N  V IDFT SNG P+  TSLHY NPY PN+Y+QA+ +VGE++ +YD DK FP FGFGAKIPP   VSH F LN N ANP   G++GI+QAY++ L +++F GPTN++ ++
Sbjct:  248 LREMSSTTGARELEWPCINE-KKQRKKKSYKNSGIVYLTSCKIIEIPSFLDFIKGGCQLNFTVGIDFTGSNGNPKAPTSLHYMNPYAPNEYMQALTSVGEIIQDYDSDKLFPCFGFGAKIPPERMVSHQFALNFNHANPYCQGLQGIIQAYQTCLPQIEFYGPTNISPII 416          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: UPI000C03AD3F (copine-8-like isoform X3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03AD3F)

HSP 1 Score: 186 bits (473), Expect = 2.600e-54
Identity = 83/157 (52.87%), Postives = 118/157 (75.16%), Query Frame = 1
Query:   28 SFDLVDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            +F+ ++  K+A+K + YK SG I ++QC++ Q+PSFLDYIRGG +I+  VAIDFTASNG P  A+SLHY NPY+ N YV+A+ AVG +  +YD DK FP+FGFGA++PP  ++SH FPLNGN  NP   G++G+L AY  ++++V+  GPTN A ++
Sbjct:  266 TFEAINPKKQAKK-KGYKNSGMIMLMQCKLEQQPSFLDYIRGGTQISFTVAIDFTASNGDPRNASSLHYINPYEQNQYVKALTAVGRICQDYDTDKLFPAFGFGARLPPTWKISHEFPLNGNLQNPMCEGIDGVLSAYYHSIQQVQLYGPTNFAPII 421          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: A0A2B4SUY7_STYPI (Copine-3 n=5 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SUY7_STYPI)

HSP 1 Score: 188 bits (478), Expect = 3.630e-54
Identity = 85/149 (57.05%), Postives = 114/149 (76.51%), Query Frame = 1
Query:   52 KKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            KK +K R YK SG I + +CE+V+  SFLD+I+GGC++N  V IDFTASNG+P  +TSLHY NPY PN+Y QA+ AVGE++ +YD DK FPSFGFGAKIPP  QVSH FPLN N +NP   G+ G++QAY++ ++ V+  GPTN++ ++
Sbjct:  266 KKQKKKRGYKNSGVIFLAKCEVVKVSSFLDFIQGGCQLNFTVGIDFTASNGEPTQSTSLHYINPYAPNEYQQALTAVGEIIQDYDSDKLFPSFGFGAKIPPTYQVSHQFPLNFNPSNPYCAGLAGLVQAYQTCIQSVQLYGPTNISPII 414          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: A0A1A7YTY7_9TELE (VWFA domain-containing protein n=4 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A1A7YTY7_9TELE)

HSP 1 Score: 182 bits (463), Expect = 3.690e-54
Identity = 82/156 (52.56%), Postives = 113/156 (72.44%), Query Frame = 1
Query:   31 FDLVDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            +++++  KK +K + Y+ SG + ++ C +  E SFLDYIRGG +IN  VAIDFTASNG P   TSLHY +PYQ NDY  A+RAVGE++ +YD DK FP+ GFGAK+PP  +VSH FPLNGN  NP   G++G+L+AY  +L+ V+  GPT+ + V+
Sbjct:   11 YEVLNPKKKGKKKKKYQNSGTVTLLSCLVDTELSFLDYIRGGTQINFTVAIDFTASNGNPSQPTSLHYMSPYQLNDYAMALRAVGEIIQDYDSDKMFPALGFGAKLPPDGRVSHEFPLNGNPQNPYCNGIDGVLEAYYQSLKSVRLYGPTHFSPVI 166          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: A0A1A8F4H2_9TELE (VWFA domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A1A8F4H2_9TELE)

HSP 1 Score: 182 bits (463), Expect = 3.690e-54
Identity = 82/156 (52.56%), Postives = 113/156 (72.44%), Query Frame = 1
Query:   31 FDLVDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            +++++  KK +K + Y+ SG + ++ C +  E SFLDYIRGG +IN  VAIDFTASNG P   TSLHY +PYQ NDY  A+RAVGE++ +YD DK FP+ GFGAK+PP  +VSH FPLNGN  NP   G++G+L+AY  +L+ V+  GPT+ + V+
Sbjct:   11 YEVLNPKKKGKKKKKYQNSGTVTLLSCLVDTELSFLDYIRGGTQINFTVAIDFTASNGNPSQPTSLHYMSPYQLNDYAMALRAVGEIIQDYDSDKMFPALGFGAKLPPDGRVSHEFPLNGNPQNPYCNGIDGVLEAYYQSLKSVRLYGPTHFSPVI 166          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: A0A8B7XJM5_ACAPL (copine-8-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XJM5_ACAPL)

HSP 1 Score: 187 bits (475), Expect = 1.190e-53
Identity = 85/166 (51.20%), Postives = 118/166 (71.08%), Query Frame = 1
Query:    1 LLQVGSNRGSFDLVDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            + Q+ + + +F+L++  KKA+K + YK SG I +  C + ++PSFLDYI+GG +IN  VA+DFTASNG P  + SLHY NPYQPN Y  AI +VGEV+ +YD DK FP  GFGA+IPP  +VSH FP+N NA +P  +G+ GI+QAY+  +  V+  GPTN A ++
Sbjct:  248 MKQLSTGKQTFELINPKKKAKK-KGYKNSGTIELTNCVVEEQPSFLDYIKGGMQINFTVAVDFTASNGNPSHSNSLHYINPYQPNHYEMAISSVGEVIQDYDSDKLFPVLGFGARIPPEGKVSHEFPVNFNAQSPFCMGIPGIMQAYQQCIRTVQLYGPTNFAPII 412          
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Match: A0A2G8L2N0_STIJA (Putative copine-8 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L2N0_STIJA)

HSP 1 Score: 186 bits (473), Expect = 1.270e-53
Identity = 87/166 (52.41%), Postives = 118/166 (71.08%), Query Frame = 1
Query:    1 LLQVGSNRGSFDLVDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIRGGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLANYDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRSTLERVKFLGPTNMAEVL 498
            + Q    R +F++++  KKA+K +SYK SG I +  C + ++ SFLD+I+GG +IN  VAIDFT SNG P  + SLHY NPYQPN Y QAI +VGEV+ +YD DK FP  GFGAKIPP   VSH FP+N NA NP  VG+ GI+QAY++ +++V+  GPTN + ++
Sbjct:  209 MRQFAEGRNTFEVINPKKKAKK-KSYKHSGTIELQNCVIEKQHSFLDFIKGGTQINFTVAIDFTGSNGNPRHSNSLHYINPYQPNHYEQAIMSVGEVIQDYDSDKLFPVLGFGAKIPPDGTVSHEFPVNFNAVNPFCVGIPGIMQAYKACIQQVQLYGPTNFSPII 373          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115819.3278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HS80_9EUKA1.540e-5953.21Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI00077AA4274.780e-5656.38copine-3-like n=1 Tax=Acropora digitifera TaxID=70... [more]
UPI001CF41BA53.130e-5557.05copine-3-like isoform X1 n=2 Tax=Acropora millepor... [more]
UPI000A2A63BA1.080e-5451.18copine-3 isoform X1 n=2 Tax=Exaiptasia diaphana Ta... [more]
UPI000C03AD3F2.600e-5452.87copine-8-like isoform X3 n=1 Tax=Stylophora pistil... [more]
A0A2B4SUY7_STYPI3.630e-5457.05Copine-3 n=5 Tax=Pocilloporidae TaxID=46729 RepID=... [more]
A0A1A7YTY7_9TELE3.690e-5452.56VWFA domain-containing protein n=4 Tax=Euteleosteo... [more]
A0A1A8F4H2_9TELE3.690e-5452.56VWFA domain-containing protein n=2 Tax=Percomorpha... [more]
A0A8B7XJM5_ACAPL1.190e-5351.20copine-8-like isoform X1 n=2 Tax=Acanthaster planc... [more]
A0A2G8L2N0_STIJA1.270e-5352.41Putative copine-8 n=1 Tax=Stichopus japonicus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115819contigM-pyrifera_M_contig115819:19..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score193.7
Seed ortholog evalue6.7e-47
Seed eggNOG ortholog7668.SPU_000229-tr
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to calcium ion
EggNOG OGs38BYU@33154,3B953@33208,3CSWC@33213,KOG1327@1,KOG1327@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.6356459-CDS-M-pyrifera_M_contig115819:18..5161622815674.6356459-CDS-M-pyrifera_M_contig115819:18..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115819 19..516 +
1692277516.0882254-CDS-M-pyrifera_M_contig115819:18..5161692277516.0882254-CDS-M-pyrifera_M_contig115819:18..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115819 19..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115819.3278.1prot_M-pyrifera_M_contig115819.3278.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115819 19..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115819.3278.1

>prot_M-pyrifera_M_contig115819.3278.1 ID=prot_M-pyrifera_M_contig115819.3278.1|Name=mRNA_M-pyrifera_M_contig115819.3278.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
LLQVGSNRGSFDLVDEGKKARKGRSYKGSGHIRVIQCEMVQEPSFLDYIR
GGCEINLMVAIDFTASNGKPEFATSLHYNNPYQPNDYVQAIRAVGEVLAN
YDMDKRFPSFGFGAKIPPRDQVSHCFPLNGNAANPEVVGVEGILQAYRST
LERVKFLGPTNMAEVL
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mRNA from alignment at M-pyrifera_M_contig115819:19..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115819.3278.1 ID=mRNA_M-pyrifera_M_contig115819.3278.1|Name=mRNA_M-pyrifera_M_contig115819.3278.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig115819:19..516+ (Macrocystis pyrifera P11B4 male)
CTGCTGCAGGTGGGGTCCAACAGAGGGTCGTTCGACCTGGTGGACGAGGG CAAGAAGGCGCGCAAGGGCAGGAGCTACAAGGGCTCGGGCCACATCCGCG TCATCCAGTGCGAGATGGTGCAGGAGCCCAGCTTCCTGGACTACATCCGC GGCGGCTGCGAGATCAACCTCATGGTGGCCATCGACTTCACTGCCTCCAA CGGCAAGCCCGAGTTCGCGACCTCGCTGCACTACAACAACCCCTACCAGC CCAACGACTACGTCCAGGCCATCCGCGCCGTGGGCGAGGTGCTGGCCAAC TACGACATGGACAAGCGGTTCCCCTCCTTTGGCTTCGGCGCCAAGATCCC TCCGCGCGACCAGGTCAGCCACTGCTTCCCCCTCAACGGCAACGCCGCCA ACCCAGAGGTCGTCGGCGTCGAGGGCATCCTCCAGGCCTACCGCTCCACT CTGGAGCGCGTCAAGTTCCTGGGGCCCACCAACATGGCCGAGGTACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115819:19..516+

>mRNA_M-pyrifera_M_contig115819.3278.1 ID=mRNA_M-pyrifera_M_contig115819.3278.1|Name=mRNA_M-pyrifera_M_contig115819.3278.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig115819:19..516+ (Macrocystis pyrifera P11B4 male)
CTGCTGCAGGTGGGGTCCAACAGAGGGTCGTTCGACCTGGTGGACGAGGG
CAAGAAGGCGCGCAAGGGCAGGAGCTACAAGGGCTCGGGCCACATCCGCG
TCATCCAGTGCGAGATGGTGCAGGAGCCCAGCTTCCTGGACTACATCCGC
GGCGGCTGCGAGATCAACCTCATGGTGGCCATCGACTTCACTGCCTCCAA
CGGCAAGCCCGAGTTCGCGACCTCGCTGCACTACAACAACCCCTACCAGC
CCAACGACTACGTCCAGGCCATCCGCGCCGTGGGCGAGGTGCTGGCCAAC
TACGACATGGACAAGCGGTTCCCCTCCTTTGGCTTCGGCGCCAAGATCCC
TCCGCGCGACCAGGTCAGCCACTGCTTCCCCCTCAACGGCAACGCCGCCA
ACCCAGAGGTCGTCGGCGTCGAGGGCATCCTCCAGGCCTACCGCTCCACT
CTGGAGCGCGTCAAGTTCCTGGGGCCCACCAACATGGCCGAGGTACTCCT
GCTGCAGGTGGGGTCCAACAGAGGGTCGTTCGACCTGGTGGACGAGGGCA
AGAAGGCGCGCAAGGGCAGGAGCTACAAGGGCTCGGGCCACATCCGCGTC
ATCCAGTGCGAGATGGTGCAGGAGCCCAGCTTCCTGGACTACATCCGCGG
CGGCTGCGAGATCAACCTCATGGTGGCCATCGACTTCACTGCCTCCAACG
GCAAGCCCGAGTTCGCGACCTCGCTGCACTACAACAACCCCTACCAGCCC
AACGACTACGTCCAGGCCATCCGCGCCGTGGGCGAGGTGCTGGCCAACTA
CGACATGGACAAGCGGTTCCCCTCCTTTGGCTTCGGCGCCAAGATCCCTC
CGCGCGACCAGGTCAGCCACTGCTTCCCCCTCAACGGCAACGCCGCCAAC
CCAGAGGTCGTCGGCGTCGAGGGCATCCTCCAGGCCTACCGCTCCACTCT
GGAGCGCGTCAAGTTCCTGGGGCCCACCAACATGGCCGAGGTACTC
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