mRNA_M-pyrifera_M_contig115816.3277.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115816.3277.1
Unique NamemRNA_M-pyrifera_M_contig115816.3277.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A662WJF7_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJF7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.230e-17
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    4 TPCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            TPCL+ LA AA  D  L +PL++A+L +SR + + VR AAL A   C +  GD +L ++ ESIPFL+E++ED DA V     R+  Q++++SGESLD YL
Sbjct: 2017 TPCLANLAWAAKSD-LLWKPLHYAVLMKSRGDCAAVRLAALVAVEKCYQVIGDEFLAMLPESIPFLAELMEDTDAEVEQTCHRVIKQIEDISGESLDQYL 2115
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A662XI38_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XI38_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.040e-16
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    4 TPCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            TPC++ LA AA  D  L +PL++A+L +SR + + VR AAL A   C +  GD +L ++ ESIPFL+E++ED DA V     R+  Q++++SGESLD YL
Sbjct:  839 TPCVANLAWAAKSD-LLWKPLHYAVLMKSRGDCAAVRLAALVAVEKCYQVIGDEFLAMLPESIPFLAELMEDTDAEVEQTCHRVIKQIEDISGESLDQYL 937
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A2K3D6D3_CHLRE (BP28CT domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D6D3_CHLRE)

HSP 1 Score: 84.0 bits (206), Expect = 1.080e-16
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 ATPCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            A  CL ALA AA  D +L +PLNH  L  +R     VR  AL      V+   + +L L+ ES+PFLSE+LEDVDAGVA++ +++  QL+E+SGE LD+YL
Sbjct: 2434 AVGCLLALAVAANSD-ALWKPLNHGALMLTRSSEPRVRALALEVVAQLVDRLREEYLVLLPESLPFLSELLEDVDAGVASRVRQVVTQLEEISGEKLDEYL 2533
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A835T7I5_CHLIN (BP28CT domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T7I5_CHLIN)

HSP 1 Score: 83.6 bits (205), Expect = 1.470e-16
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 ATPCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            A  CL ALA AA   D+L +PLNH  L  +R     VR  AL      V+   + +L L+ ES+PF+SE+LEDVDAGVAA+ +++  QL+E+SGE LD+YL
Sbjct: 2428 AVGCLLALAVAAN-TDALWKPLNHGALMITRSSEPRVRALALEVVAQLVDRLREEYLVLLPESLPFISELLEDVDAGVAARVRQVVTQLEEISGEKLDEYL 2527
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A835WFP4_9CHLO (BP28CT domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WFP4_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 1.470e-16
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 ATPCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            A  CL ALA AA  +D+L +PLNH  L  +R     VR  AL      V+   + +L L+ ES+PFLSE+LEDVDAGVA + +++  QL+E+SGE LD+YL
Sbjct: 2462 AVGCLLALAVAAN-NDALWKPLNHGALMLTRSSEPRVRALALEVVAQLVDRLREEYLVLLPESLPFLSELLEDVDAGVAERVRQVVAQLEEISGEKLDEYL 2561
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A7R9ZGM1_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGM1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.330e-16
Identity = 47/100 (47.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   10 CLSALASAAGGDDSLLRPLNHAILTR-SRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYLA 306
            CL+ALA+AAG ++ L +PLNHAIL     +ERSEVR+A +S   + +++ G+ ++ L+ ES+P LSE+LED D  +A  A+    Q +EL GESLDD ++
Sbjct:  176 CLTALAAAAG-NEQLWKPLNHAILESCGNEERSEVRKAGVSCLLSVIQSLGEEYMVLLPESLPILSELLEDSDEDIAGLAKECITQGEELLGESLDDAIS 274
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: K3XAW6_GLOUD (HEAT repeat-containing protein 1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAW6_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-15
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    4 TPCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            T C++ LA AA  D  L +PL++A+L +SR + S VR A L     C +  GD +L ++ ESIPFL+E++ED DA V     ++  Q++E+SGESLD YL
Sbjct: 2067 TSCVANLAWAAKSD-LLWKPLHYAVLMKSRSDSSAVRLATLKTVEKCYQVIGDEFLAMLPESIPFLAELMEDTDAEVERTCHQVIKQIEEISGESLDQYL 2165
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: M4BUD0_HYAAE (HEAT repeat-containing protein 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUD0_HYAAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.420e-15
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    7 PCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            PCL+ LA AA  D  L +PL++A+L +SR E + VR AAL     C +  GD +L ++ ESIPFL+E++ED +  V     R+  Q++++SGESLD YL
Sbjct: 1993 PCLANLAWAAKSD-LLWKPLHYAVLMKSRGESAAVRLAALVTVEKCYQVIGDEFLSMLPESIPFLAELMEDTNVEVEKTCHRVIKQIEDISGESLDQYL 2090
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BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A5D6XXU5_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXU5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.300e-15
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:    7 PCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            PCL+ LA AA  D  L +PL++A+L +SR     VR AAL     C +  GD +L ++ ESIPFL+E++ED DA V     ++  Q++++SGESLD YL
Sbjct: 2083 PCLANLAWAAKSD-LLWKPLHYAVLMKSRSPAPGVRLAALKTIEQCYQVIGDEFLAMLPESIPFLAELMEDTDAEVERTCHQVVKQIEDISGESLDQYL 2180
[Close]
BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Match: A0A836BRT2_9CHLO (BP28CT domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BRT2_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 3.310e-15
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   10 CLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVEAAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDYL 303
            CL A+A AA   D+L +PLNHA L  +R     VR   L  A   VE   + +L L+ E++PFL+E LED DAGVAA+ +++  QL+E+SGE LD+YL
Sbjct: 2438 CLLAMAVAAN-TDALWKPLNHAALMLTRAGSPRVRALGLELAAQLVERLREEYLVLLPEALPFLAEALEDADAGVAARVRQVVAQLEEISGEKLDEYL 2534
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115816.3277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662WJF7_9STRA4.230e-1748.00HEAT repeat-containing protein 1 n=1 Tax=Nothophyt... [more]
A0A662XI38_9STRA1.040e-1647.00HEAT repeat-containing protein 1 n=1 Tax=Nothophyt... [more]
A0A2K3D6D3_CHLRE1.080e-1648.51BP28CT domain-containing protein n=1 Tax=Chlamydom... [more]
A0A835T7I5_CHLIN1.470e-1648.51BP28CT domain-containing protein n=1 Tax=Chlamydom... [more]
A0A835WFP4_9CHLO1.470e-1648.51BP28CT domain-containing protein n=1 Tax=Chlamydom... [more]
A0A7R9ZGM1_9STRA6.330e-1647.00HEAT repeat-containing protein 1 n=1 Tax=Pseudicty... [more]
K3XAW6_GLOUD1.770e-1545.00HEAT repeat-containing protein 1 n=1 Tax=Globispor... [more]
M4BUD0_HYAAE2.420e-1545.45HEAT repeat-containing protein 1 n=1 Tax=Hyalopero... [more]
A0A5D6XXU5_9STRA3.300e-1545.45HEAT repeat-containing protein 1 n=1 Tax=Pythium b... [more]
A0A836BRT2_9CHLO3.310e-1547.96BP28CT domain-containing protein n=1 Tax=Edaphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115816contigM-pyrifera_M_contig115816:46..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog115417.EPrPW00000025439
KEGG koko:K14550
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.Source PGD
EggNOG OGs1MEJY@121069,KOG1837@1,KOG1837@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.5973747-CDS-M-pyrifera_M_contig115816:45..3541622815674.5973747-CDS-M-pyrifera_M_contig115816:45..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115816 46..354 -
1692277516.0758345-CDS-M-pyrifera_M_contig115816:45..3541692277516.0758345-CDS-M-pyrifera_M_contig115816:45..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115816 46..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115816.3277.1prot_M-pyrifera_M_contig115816.3277.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115816 46..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115816.3277.1

>prot_M-pyrifera_M_contig115816.3277.1 ID=prot_M-pyrifera_M_contig115816.3277.1|Name=mRNA_M-pyrifera_M_contig115816.3277.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
ATPCLSALASAAGGDDSLLRPLNHAILTRSRDERSEVRRAALSAARACVE
AAGDHWLGLMAESIPFLSEVLEDVDAGVAAQAQRLKVQLQELSGESLDDY
LA*
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mRNA from alignment at M-pyrifera_M_contig115816:46..354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115816.3277.1 ID=mRNA_M-pyrifera_M_contig115816.3277.1|Name=mRNA_M-pyrifera_M_contig115816.3277.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig115816:46..354- (Macrocystis pyrifera P11B4 male)
GCCACGCCGTGCCTGTCTGCGCTGGCGTCCGCCGCGGGCGGCGACGACTC
GCTGCTGCGGCCGCTGAACCACGCGATCCTGACGCGGTCTCGCGACGAGC
GGTCCGAGGTGCGGCGCGCTGCGCTGTCTGCCGCGCGCGCGTGCGTGGAG
GCGGCGGGCGACCACTGGCTGGGTCTGATGGCGGAGAGTATCCCGTTCCT
GTCAGAGGTGCTGGAGGACGTGGACGCTGGCGTGGCGGCGCAGGCGCAGC
GGCTGAAGGTGCAGCTGCAGGAGCTGAGCGGAGAGTCGCTGGACGACTAC
CTCGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115816:46..354-

>mRNA_M-pyrifera_M_contig115816.3277.1 ID=mRNA_M-pyrifera_M_contig115816.3277.1|Name=mRNA_M-pyrifera_M_contig115816.3277.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig115816:46..354- (Macrocystis pyrifera P11B4 male)
GCCACGCCGTGCCTGTCTGCGCTGGCGTCCGCCGCGGGCGGCGACGACTC
GCTGCTGCGGCCGCTGAACCACGCGATCCTGACGCGGTCTCGCGACGAGC
GGTCCGAGGTGCGGCGCGCTGCGCTGTCTGCCGCGCGCGCGTGCGTGGAG
GCGGCGGGCGACCACTGGCTGGGTCTGATGGCGGAGAGTATCCCGTTCCT
GTCAGAGGTGCTGGAGGACGTGGACGCTGGCGTGGCGGCGCAGGCGCAGC
GGCTGAAGGTGCAGCTGCAGGAGCTGAGCGGAGAGTCGCTGGACGACTAC
CTCGCGTGAGCCACGCCGTGCCTGTCTGCGCTGGCGTCCGCCGCGGGCGG
CGACGACTCGCTGCTGCGGCCGCTGAACCACGCGATCCTGACGCGGTCTC
GCGACGAGCGGTCCGAGGTGCGGCGCGCTGCGCTGTCTGCCGCGCGCGCG
TGCGTGGAGGCGGCGGGCGACCACTGGCTGGGTCTGATGGCGGAGAGTAT
CCCGTTCCTGTCAGAGGTGCTGGAGGACGTGGACGCTGGCGTGGCGGCGC
AGGCGCAGCGGCTGAAGGTGCAGCTGCAGGAGCTGAGCGGAGAGTCGCTG
GACGACTACCTCGCGTGA
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