mRNA_M-pyrifera_M_contig115798.3271.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115798.3271.1
Unique NamemRNA_M-pyrifera_M_contig115798.3271.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: A0A3C1KKF1_9GAMM (LLM class F420-dependent oxidoreductase n=6 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KKF1_9GAMM)

HSP 1 Score: 291 bits (745), Expect = 6.580e-97
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAALVN 438
            WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQ LFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMA LVN
Sbjct:  192 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQELFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAELVN 337          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: A0A7Y1ZJU4_9GAMM (LLM class flavin-dependent oxidoreductase n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A7Y1ZJU4_9GAMM)

HSP 1 Score: 239 bits (611), Expect = 7.070e-79
Identity = 116/144 (80.56%), Postives = 126/144 (87.50%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAAL 432
            WLPLYYSPYRQEVYA QL +A+PGFE+   VL NINDN+++ALYPVKAMLGFYIGGMGS  RNFHKELMARMGF DEAE+IQ LFF GKRD+AIA VPD FADEISL GPRDRIKEKL DWENSP+TSLLI+GD  LLREMA L
Sbjct:   28 WLPLYYSPYRQEVYADQLVDAKPGFEVCPTVLVNINDNMEDALYPVKAMLGFYIGGMGSAKRNFHKELMARMGFPDEAEEIQTLFFEGKRDQAIAAVPDQFADEISLCGPRDRIKEKLSDWENSPITSLLISGDVNLLREMAEL 171          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: UPI0019E6CCF3 (LLM class flavin-dependent oxidoreductase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E6CCF3)

HSP 1 Score: 239 bits (609), Expect = 8.920e-79
Identity = 114/144 (79.17%), Postives = 129/144 (89.58%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAAL 432
            WLPLYYSPYR+EVYA QL  A+PGFEI A+ L NINDNL+EALYPVKAMLG YIGGMGSK+RNFHKELMARMGF+DEAE+IQALF AGK+DEAIA VPD FADEISLSGP+DRI+EK+ DW+NS VTSLL+NGD  +LR+MA L
Sbjct:   14 WLPLYYSPYREEVYADQLVEAKPGFEISAMALVNINDNLEEALYPVKAMLGLYIGGMGSKSRNFHKELMARMGFSDEAEEIQALFMAGKKDEAIAAVPDQFADEISLSGPKDRIREKIVDWKNSSVTSLLVNGDVNMLRDMAEL 157          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: A0A2N5WX97_9GAMM (LLM class F420-dependent oxidoreductase n=2 Tax=Pseudohalioglobus TaxID=2875235 RepID=A0A2N5WX97_9GAMM)

HSP 1 Score: 237 bits (604), Expect = 1.590e-75
Identity = 114/145 (78.62%), Postives = 126/145 (86.90%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAALV 435
            WLPLYYSPYRQEVYA Q+  AR GFEI   V+ NIND+L+ ALYPVKAMLGFYIGGMGS  RNFHKELMARMGF DEAEQIQ+LFF GKRDEAIA VPDAFADEISL GPRDR++EK++DWENSPVTSLL+NGD   LR++A LV
Sbjct:  193 WLPLYYSPYRQEVYADQIAGAREGFEICPTVMVNINDDLEAALYPVKAMLGFYIGGMGSAKRNFHKELMARMGFPDEAEQIQSLFFQGKRDEAIAAVPDAFADEISLCGPRDRVREKIQDWENSPVTSLLVNGDEDFLRDLAELV 337          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: UPI00167531A7 (LLM class F420-dependent oxidoreductase n=1 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI00167531A7)

HSP 1 Score: 235 bits (599), Expect = 8.830e-75
Identity = 111/144 (77.08%), Postives = 126/144 (87.50%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAAL 432
            WLPLYYSPYRQEVYA Q+  A+PGFE+  +VL N++DN++EALYPVKAMLGFYIGGMGSKARNFHKELM+RMGF DEAEQIQ LFF GKRDEAIA VP  FADEISL GP++RI EKL+DWENSPVTSLLI+GD  L++ MA L
Sbjct:  192 WLPLYYSPYRQEVYADQISGAKPGFEVSPIVLVNVHDNVEEALYPVKAMLGFYIGGMGSKARNFHKELMSRMGFTDEAEQIQQLFFEGKRDEAIAAVPSQFADEISLCGPKERIAEKLKDWENSPVTSLLISGDETLMQTMAEL 335          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: A0A5C8ZTS1_9GAMM (LLM class F420-dependent oxidoreductase n=2 Tax=Parahaliea TaxID=1857932 RepID=A0A5C8ZTS1_9GAMM)

HSP 1 Score: 233 bits (594), Expect = 4.610e-74
Identity = 115/145 (79.31%), Postives = 126/145 (86.90%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAALV 435
            WLPLYYSPYRQEVYA QL  A  GFEI + V+ NIND+L  ALYPVKAMLGFYIGGMGSK RNFHKELMARMGFADEAE IQ LFF GKRDEAIA VPDAFADEISL GP++RI+EKL+DWE+SPVTSLLI+GD  L+R+MA LV
Sbjct:  189 WLPLYYSPYRQEVYADQLAGAPAGFEISSTVMVNINDDLATALYPVKAMLGFYIGGMGSKQRNFHKELMARMGFADEAETIQNLFFEGKRDEAIACVPDAFADEISLCGPKERIREKLQDWEDSPVTSLLIHGDLQLIRDMAELV 333          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: UPI0019D346E3 (LLM class F420-dependent oxidoreductase n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D346E3)

HSP 1 Score: 233 bits (594), Expect = 5.040e-74
Identity = 113/144 (78.47%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAAL 432
            WLPLYYSPYRQEVYA Q+  A  GFEI   V+ N+ND+L  ALYPVKAMLGFYIGGMGSK RNFHKELMARMGF DEAEQIQ LFFAG+RDEAIA VPDAFADEISL GPR+RI+EKL+DWE SPVT+LL+NGD ALLR +A L
Sbjct:  192 WLPLYYSPYRQEVYADQIAGAPEGFEIACTVMTNVNDDLAAALYPVKAMLGFYIGGMGSKKRNFHKELMARMGFEDEAEQIQELFFAGQRDEAIACVPDAFADEISLCGPRERIREKLQDWERSPVTTLLVNGDAALLRTLAEL 335          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: A0A2D5FDR9_9GAMM (LLM class F420-dependent oxidoreductase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FDR9_9GAMM)

HSP 1 Score: 229 bits (584), Expect = 1.640e-72
Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAALV 435
            WLPLYYSPYRQEVYASQL  A PGFEI   V+ NI+D+L +ALYPVKAMLGFYIGGMGSK  NFHK+LMARMGFADEAEQIQ LFFAG+RD+AIA VPD FADEISLSGP  RI+EKL DW  SPVT+LL+NGD A LR++A LV
Sbjct:  192 WLPLYYSPYRQEVYASQLTAAGPGFEIAPTVMVNIHDDLQQALYPVKAMLGFYIGGMGSKKNNFHKDLMARMGFADEAEQIQELFFAGERDKAIAAVPDQFADEISLSGPVGRIREKLEDWRRSPVTTLLVNGDKAFLRQLAELV 336          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: A0A2E8KH38_9GAMM (LLM class F420-dependent oxidoreductase n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8KH38_9GAMM)

HSP 1 Score: 229 bits (583), Expect = 2.190e-72
Identity = 110/145 (75.86%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAALV 435
            WLPLYYSPYRQEVYA QL+ A+PGFEIPA+ + +  D ++E L PVKAMLGFYIGGMG+K RNFHK+LM RMGF +EA Q+Q LFF GKRDEAIA VPDAFADEISL GP++RIKEKL+DWENSPVTSLLI GDT LLR MA LV
Sbjct:  190 WLPLYYSPYRQEVYADQLKAAKPGFEIPAMAIVSETDTVEEGLMPVKAMLGFYIGGMGAKKRNFHKDLMGRMGFEEEANQVQELFFEGKRDEAIAAVPDAFADEISLVGPKERIKEKLQDWENSPVTSLLIMGDTNLLRTMAELV 334          
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Match: A0A2E7IT50_9GAMM (LLM class F420-dependent oxidoreductase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7IT50_9GAMM)

HSP 1 Score: 229 bits (583), Expect = 2.190e-72
Identity = 108/145 (74.48%), Postives = 127/145 (87.59%), Query Frame = 1
Query:    1 WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAMLGFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDAFADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAALV 435
            WLPLYYSPYRQEVYA QL+NA+PGFEI A+ + NIND+L++ALYPVKAML FYIGGMGSK RNFHKELM+RMGF  EA++IQ LFF GK+DEAI +VPD FADEISLSG RDR+KE+L  W++SPVTSLL+ GD +LLREMA +V
Sbjct:  190 WLPLYYSPYRQEVYADQLKNAKPGFEISAMAMVNINDDLEQALYPVKAMLAFYIGGMGSKKRNFHKELMSRMGFEAEADKIQELFFEGKQDEAIKIVPDQFADEISLSGSRDRVKERLEAWKDSPVTSLLVMGDNSLLREMAEMV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115798.3271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KKF1_9GAMM6.580e-9798.63LLM class F420-dependent oxidoreductase n=6 Tax=Ha... [more]
A0A7Y1ZJU4_9GAMM7.070e-7980.56LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
UPI0019E6CCF38.920e-7979.17LLM class flavin-dependent oxidoreductase n=1 Tax=... [more]
A0A2N5WX97_9GAMM1.590e-7578.62LLM class F420-dependent oxidoreductase n=2 Tax=Ps... [more]
UPI00167531A78.830e-7577.08LLM class F420-dependent oxidoreductase n=1 Tax=Ha... [more]
A0A5C8ZTS1_9GAMM4.610e-7479.31LLM class F420-dependent oxidoreductase n=2 Tax=Pa... [more]
UPI0019D346E35.040e-7478.47LLM class F420-dependent oxidoreductase n=1 Tax=Pa... [more]
A0A2D5FDR9_9GAMM1.640e-7277.24LLM class F420-dependent oxidoreductase n=1 Tax=Ha... [more]
A0A2E8KH38_9GAMM2.190e-7275.86LLM class F420-dependent oxidoreductase n=3 Tax=Ba... [more]
A0A2E7IT50_9GAMM2.190e-7274.48LLM class F420-dependent oxidoreductase n=3 Tax=Ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115798contigM-pyrifera_M_contig115798:123..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score290.0
Seed ortholog evalue6e-76
Seed eggNOG ortholog1121937.AUHJ01000001_gene365
Preferred namemer
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944
EggNOG free text desc.COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EggNOG OGs1R76K@1224,COG2141@1,COG2141@2
COG Functional cat.C
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.1717405-CDS-M-pyrifera_M_contig115798:122..5631622815674.1717405-CDS-M-pyrifera_M_contig115798:122..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115798 123..563 -
1692277515.8365467-CDS-M-pyrifera_M_contig115798:122..5631692277515.8365467-CDS-M-pyrifera_M_contig115798:122..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115798 123..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115798.3271.1prot_M-pyrifera_M_contig115798.3271.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115798 123..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115798.3271.1

>prot_M-pyrifera_M_contig115798.3271.1 ID=prot_M-pyrifera_M_contig115798.3271.1|Name=mRNA_M-pyrifera_M_contig115798.3271.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
WLPLYYSPYRQEVYASQLRNARPGFEIPALVLCNINDNLDEALYPVKAML
GFYIGGMGSKARNFHKELMARMGFADEAEQIQALFFAGKRDEAIALVPDA
FADEISLSGPRDRIKEKLRDWENSPVTSLLINGDTALLREMAALVN*
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mRNA from alignment at M-pyrifera_M_contig115798:123..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115798.3271.1 ID=mRNA_M-pyrifera_M_contig115798.3271.1|Name=mRNA_M-pyrifera_M_contig115798.3271.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig115798:123..563- (Macrocystis pyrifera P11B4 male)
TGGCTGCCACTCTACTACTCCCCCTACCGTCAGGAGGTCTACGCCAGCCA GTTGCGCAACGCCAGACCCGGCTTCGAAATTCCCGCGCTGGTACTGTGCA ACATCAACGACAACCTTGATGAAGCGCTGTACCCGGTCAAGGCCATGCTG GGCTTCTACATTGGCGGCATGGGGTCCAAAGCACGCAACTTTCACAAGGA GTTGATGGCGCGCATGGGTTTCGCGGATGAAGCCGAGCAGATTCAGGCCC TGTTTTTTGCCGGCAAGCGGGACGAGGCAATTGCGCTGGTGCCCGACGCC TTCGCTGACGAGATTTCGCTCTCGGGCCCCCGTGACCGCATCAAGGAGAA GCTGCGCGACTGGGAAAACTCCCCGGTCACAAGCCTGTTGATCAATGGCG ACACAGCGCTGCTGCGCGAAATGGCGGCGCTGGTAAATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115798:123..563-

>mRNA_M-pyrifera_M_contig115798.3271.1 ID=mRNA_M-pyrifera_M_contig115798.3271.1|Name=mRNA_M-pyrifera_M_contig115798.3271.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig115798:123..563- (Macrocystis pyrifera P11B4 male)
TGGCTGCCACTCTACTACTCCCCCTACCGTCAGGAGGTCTACGCCAGCCA
GTTGCGCAACGCCAGACCCGGCTTCGAAATTCCCGCGCTGGTACTGTGCA
ACATCAACGACAACCTTGATGAAGCGCTGTACCCGGTCAAGGCCATGCTG
GGCTTCTACATTGGCGGCATGGGGTCCAAAGCACGCAACTTTCACAAGGA
GTTGATGGCGCGCATGGGTTTCGCGGATGAAGCCGAGCAGATTCAGGCCC
TGTTTTTTGCCGGCAAGCGGGACGAGGCAATTGCGCTGGTGCCCGACGCC
TTCGCTGACGAGATTTCGCTCTCGGGCCCCCGTGACCGCATCAAGGAGAA
GCTGCGCGACTGGGAAAACTCCCCGGTCACAAGCCTGTTGATCAATGGCG
ACACAGCGCTGCTGCGCGAAATGGCGGCGCTGGTAAATTGATGGCTGCCA
CTCTACTACTCCCCCTACCGTCAGGAGGTCTACGCCAGCCAGTTGCGCAA
CGCCAGACCCGGCTTCGAAATTCCCGCGCTGGTACTGTGCAACATCAACG
ACAACCTTGATGAAGCGCTGTACCCGGTCAAGGCCATGCTGGGCTTCTAC
ATTGGCGGCATGGGGTCCAAAGCACGCAACTTTCACAAGGAGTTGATGGC
GCGCATGGGTTTCGCGGATGAAGCCGAGCAGATTCAGGCCCTGTTTTTTG
CCGGCAAGCGGGACGAGGCAATTGCGCTGGTGCCCGACGCCTTCGCTGAC
GAGATTTCGCTCTCGGGCCCCCGTGACCGCATCAAGGAGAAGCTGCGCGA
CTGGGAAAACTCCCCGGTCACAAGCCTGTTGATCAATGGCGACACAGCGC
TGCTGCGCGAAATGGCGGCGCTGGTAAATTGA
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