mRNA_M-pyrifera_M_contig115790.3267.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115790.3267.1
Unique NamemRNA_M-pyrifera_M_contig115790.3267.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A1Z5KL01_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL01_FISSO)

HSP 1 Score: 109 bits (272), Expect = 2.210e-26
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAFQ 306
            PT ACI FH DG      RTSQI LN P EYVGG L  ++   LH+  RP GS+ +H  +VLHGVT L  GTRKSLFV+ R   LG+G V  V+ D +  FQ
Sbjct:  214 PTNACINFHCDG--GYATRTSQIALNDPSEYVGGRLVFFVNDVLHVLERPAGSLVQHPRQVLHGVTCLTSGTRKSLFVVDRFNGLGEGGVVEVSSDQVDGFQ 313          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A7S3UUM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUM9_HETAK)

HSP 1 Score: 103 bits (257), Expect = 5.930e-25
Identity = 53/101 (52.48%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAF 303
            PT ACI FH DG  +    T+QI LN   EY GG LC Y  G+L   SR  GS + H   VLHGVT L+ GTRKSLFVL R   LG+ DV  VT +++ AF
Sbjct:   52 PTNACINFHYDGPYATS--TTQIALNPESEYEGGRLCFYSNGKLTELSRRPGSCSHHSPGVLHGVTNLISGTRKSLFVLDRNNGLGEKDVINVTPEHIAAF 150          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A1Z5KFC5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFC5_FISSO)

HSP 1 Score: 98.2 bits (243), Expect = 3.410e-22
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAF 303
            PT ACI FH DG  +    TSQI LN P +Y GG L  ++   LH+  RP GS+ +H S VLHGVT+L  GTRKSLFV+     LG+G V  V+  ++  F
Sbjct:  216 PTNACINFHCDGPYATS--TSQIALNDPSKYAGGRLVYFVNDVLHVPERPVGSLVQHPSSVLHGVTSLRSGTRKSLFVVDTTNGLGEGGVVEVSSAHVEGF 314          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A812QEB8_9DINO (UBC protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QEB8_9DINO)

HSP 1 Score: 98.2 bits (243), Expect = 3.660e-22
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAF 303
            P+  CI FH DG  + G  T QI L+ P EY GG LC ++  RLH+  RP GSM +H   VLH VTAL  GTRKSLFV+ +   LG+  V   +++++  F
Sbjct:  218 PSNGCINFHCDGGYATG--TVQIALSEPSEYQGGRLCFFVNDRLHVLERPAGSMCQHPRAVLHAVTALTGGTRKSLFVVDKCNGLGENGVVVASREDVQEF 316          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A812RHV2_9DINO (TU20 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RHV2_9DINO)

HSP 1 Score: 97.1 bits (240), Expect = 9.340e-22
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAFQ 306
            P+ +CI FH DG  + G  T Q+ L+ P EY GG LC ++   LH+  RP GS  +H   VLHGVTAL EGTRKSLFV+  E  LG+  V   +  ++  FQ
Sbjct:  219 PSNSCINFHCDGGYATG--TVQVALSEPWEYKGGRLCFFVMDGLHVLERPAGSTCQHPRTVLHGVTALQEGTRKSLFVVDTENGLGEEGVVLASHVHVQGFQ 318          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A812I3A5_9DINO (Ubi protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I3A5_9DINO)

HSP 1 Score: 95.9 bits (237), Expect = 2.460e-21
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAFQ 306
            P+  CI FH DG  + G  T Q+ L+ P EY GG LC ++ G LH+  R  GS+ +H   VLHGVTAL EGTRKSLFV+  +  LG+  V   +  ++  FQ
Sbjct:  217 PSNGCIDFHCDGSYATG--TVQVALSEPWEYNGGRLCFFVMGGLHVLERSAGSLCQHPPAVLHGVTALKEGTRKSLFVVDMQNGLGEEGVVVPSHIHVQGFQ 316          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A7S3DDB4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DDB4_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 8.180e-18
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVL 237
            P+ ACIGFH DG  S    T QI LN   EY GG L  +    + +A RP GS++ H ++VLHGVT L  GTRKSLFV+
Sbjct:   32 PSDACIGFHCDGVHSS--HTVQIPLNPETEYEGGKLVFFNNNEIVVAPRPPGSLSVHEAKVLHGVTKLKRGTRKSLFVV 108          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A0G4FBA2_9ALVE (Ubiquitin-like domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FBA2_9ALVE)

HSP 1 Score: 84.7 bits (208), Expect = 5.320e-17
Identity = 45/101 (44.55%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAF 303
            PT+ACI FH DG+ +    T QI +N   EY GG L  +    L    R  GS+T H  +VLHGVT L  G RKSLFV+     LG  DV   T D++ +F
Sbjct:  224 PTKACIDFHCDGDYAS--HTVQICVNDQAEYAGGRLVFFTEKGLEFPERTPGSVTVHCRKVLHGVTHLESGVRKSLFVVDSGNGLGQSDVHYATSDDVESF 322          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: A0A7S0AG55_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AG55_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.510e-17
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   58 TSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLAF 303
            T+QI LN+ +EY GG LC ++  R+H   R  GSM +H   +LHGVT++ +GTRKSLFV+     LG   V  VT ++++ F
Sbjct:   17 TTQIPLNSLDEYEGGKLCFFVNDRIHFVPRVAGSMVQHPPHILHGVTSVTKGTRKSLFVVDDSNSLGMEGVIKVTANHVVMF 98          
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Match: K0SBA4_THAOC (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBA4_THAOC)

HSP 1 Score: 82.8 bits (203), Expect = 9.300e-17
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    4 TRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRPQGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLG 258
            T +CI FH DG  +    TSQI LN P EY GG+LC + + ++ + +R  GS+  H  +VLHGVT + EG RKS+F+L    +LG
Sbjct:  228 TNSCINFHCDGTYATS--TSQIPLNPPTEYKGGSLCFFAKDKVIMVARTVGSVVGHSPKVLHGVTRVTEGVRKSMFILDDTNNLG 310          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115790.3267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A1Z5KL01_FISSO2.210e-2652.94Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3UUM9_HETAK5.930e-2552.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5KFC5_FISSO3.410e-2248.51Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A812QEB8_9DINO3.660e-2246.53UBC protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A812RHV2_9DINO9.340e-2247.06TU20 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812I3A5_9DINO2.460e-2146.08Ubi protein n=1 Tax=Symbiodinium natans TaxID=8784... [more]
A0A7S3DDB4_9EUKA8.180e-1851.90Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A0G4FBA2_9ALVE5.320e-1744.55Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A7S0AG55_9STRA5.510e-1745.12Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
K0SBA4_THAOC9.300e-1745.88Ubiquitin-like domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115790contigM-pyrifera_M_contig115790:1..306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog159749.K0TQG2
KEGG koko:K08770
KEGG Pathwayko03320,map03320
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0001@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.9918306-CDS-M-pyrifera_M_contig115790:0..3061622815673.9918306-CDS-M-pyrifera_M_contig115790:0..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115790 1..306 +
1692277515.7633529-CDS-M-pyrifera_M_contig115790:0..3061692277515.7633529-CDS-M-pyrifera_M_contig115790:0..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115790 1..306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115790.3267.1prot_M-pyrifera_M_contig115790.3267.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115790 1..306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115790.3267.1

>prot_M-pyrifera_M_contig115790.3267.1 ID=prot_M-pyrifera_M_contig115790.3267.1|Name=mRNA_M-pyrifera_M_contig115790.3267.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
PTRACIGFHVDGERSEGQRTSQIVLNAPEEYVGGNLCIYLRGRLHIASRP
QGSMTRHHSRVLHGVTALVEGTRKSLFVLSREGDLGDGDVATVTQDNLLA
FQ
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mRNA from alignment at M-pyrifera_M_contig115790:1..306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115790.3267.1 ID=mRNA_M-pyrifera_M_contig115790.3267.1|Name=mRNA_M-pyrifera_M_contig115790.3267.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig115790:1..306+ (Macrocystis pyrifera P11B4 male)
CCGACGAGAGCTTGCATCGGCTTCCACGTCGACGGCGAGCGCAGTGAGGG ACAACGCACATCACAGATTGTCCTTAATGCGCCCGAAGAGTATGTTGGTG GCAACCTCTGCATCTACCTGCGCGGCAGGCTGCACATTGCGTCTCGGCCG CAGGGATCGATGACGCGCCATCACAGCCGAGTTCTGCATGGCGTGACGGC TCTGGTCGAGGGCACGCGCAAGAGTCTCTTCGTTCTCTCTCGCGAGGGCG ATCTCGGCGACGGTGACGTTGCTACCGTCACGCAAGACAACCTCCTTGCC TTTCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115790:1..306+

>mRNA_M-pyrifera_M_contig115790.3267.1 ID=mRNA_M-pyrifera_M_contig115790.3267.1|Name=mRNA_M-pyrifera_M_contig115790.3267.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig115790:1..306+ (Macrocystis pyrifera P11B4 male)
CCGACGAGAGCTTGCATCGGCTTCCACGTCGACGGCGAGCGCAGTGAGGG
ACAACGCACATCACAGATTGTCCTTAATGCGCCCGAAGAGTATGTTGGTG
GCAACCTCTGCATCTACCTGCGCGGCAGGCTGCACATTGCGTCTCGGCCG
CAGGGATCGATGACGCGCCATCACAGCCGAGTTCTGCATGGCGTGACGGC
TCTGGTCGAGGGCACGCGCAAGAGTCTCTTCGTTCTCTCTCGCGAGGGCG
ATCTCGGCGACGGTGACGTTGCTACCGTCACGCAAGACAACCTCCTTGCC
TTTCAACCGACGAGAGCTTGCATCGGCTTCCACGTCGACGGCGAGCGCAG
TGAGGGACAACGCACATCACAGATTGTCCTTAATGCGCCCGAAGAGTATG
TTGGTGGCAACCTCTGCATCTACCTGCGCGGCAGGCTGCACATTGCGTCT
CGGCCGCAGGGATCGATGACGCGCCATCACAGCCGAGTTCTGCATGGCGT
GACGGCTCTGGTCGAGGGCACGCGCAAGAGTCTCTTCGTTCTCTCTCGCG
AGGGCGATCTCGGCGACGGTGACGTTGCTACCGTCACGCAAGACAACCTC
CTTGCCTTTCAA
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