mRNA_M-pyrifera_M_contig115705.3259.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115705.3259.1
Unique NamemRNA_M-pyrifera_M_contig115705.3259.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115705.3259.1 vs. uniprot
Match: A0A7J5TRN3_9BACT (Uncharacterized protein n=2 Tax=Rudanella paleaurantiibacter TaxID=2614655 RepID=A0A7J5TRN3_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 9.290e-5
Identity = 31/96 (32.29%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:   85 TYDAVGNVVEVRRWGAGGLVAVGRTE---YDAETMRFGVRKTNALGFVISHTFDPALGTILSTTNENNITTKYKTNLLGQPLETIRADGAIESIER 363
            T+D  GN+ +       G     RT+   +D+   RF +R TNALG   S T+DPALG++L++T+ N + + ++ +  G+ ++     G  E++ER
Sbjct: 2628 THDVFGNITQTESRAWNGTQVESRTDQFVFDSRG-RFQIRMTNALGQQTSATYDPALGSVLTSTDRNGLVSNFQYDAFGRMVKVTTPTGE-ETVER 2721
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115705.3259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7J5TRN3_9BACT9.290e-532.29Uncharacterized protein n=2 Tax=Rudanella paleaura... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115705contigM-pyrifera_M_contig115705:52..423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.4975388-CDS-M-pyrifera_M_contig115705:51..4231622815673.4975388-CDS-M-pyrifera_M_contig115705:51..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115705 52..423 +
1692277515.501674-CDS-M-pyrifera_M_contig115705:51..4231692277515.501674-CDS-M-pyrifera_M_contig115705:51..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115705 52..423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115705.3259.1prot_M-pyrifera_M_contig115705.3259.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115705 52..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115705.3259.1

>prot_M-pyrifera_M_contig115705.3259.1 ID=prot_M-pyrifera_M_contig115705.3259.1|Name=mRNA_M-pyrifera_M_contig115705.3259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
YTPDFNTGALLGQVEGVEDAKYTHGINKTYDAVGNVVEVRRWGAGGLVAV
GRTEYDAETMRFGVRKTNALGFVISHTFDPALGTILSTTNENNITTKYKT
NLLGQPLETIRADGAIESIERRWC
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mRNA from alignment at M-pyrifera_M_contig115705:52..423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115705.3259.1 ID=mRNA_M-pyrifera_M_contig115705.3259.1|Name=mRNA_M-pyrifera_M_contig115705.3259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig115705:52..423+ (Macrocystis pyrifera P11B4 male)
TACACGCCAGATTTTAATACAGGAGCCCTTCTTGGACAGGTAGAGGGTGT
TGAAGATGCCAAGTACACTCATGGGATTAACAAGACGTACGATGCCGTCG
GGAATGTGGTCGAGGTTCGTCGCTGGGGAGCAGGGGGGTTGGTGGCAGTG
GGAAGAACTGAGTATGATGCAGAAACGATGCGTTTTGGAGTGCGCAAGAC
CAATGCCCTTGGATTTGTCATCTCCCACACATTTGACCCAGCTCTCGGTA
CCATTCTCTCTACCACCAATGAAAACAACATCACTACCAAGTACAAAACC
AACCTCCTTGGCCAACCACTCGAAACGATCCGCGCCGACGGCGCAATAGA
ATCGATTGAGCGGCGATGGTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115705:52..423+

>mRNA_M-pyrifera_M_contig115705.3259.1 ID=mRNA_M-pyrifera_M_contig115705.3259.1|Name=mRNA_M-pyrifera_M_contig115705.3259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig115705:52..423+ (Macrocystis pyrifera P11B4 male)
TACACGCCAGATTTTAATACAGGAGCCCTTCTTGGACAGGTAGAGGGTGT
TGAAGATGCCAAGTACACTCATGGGATTAACAAGACGTACGATGCCGTCG
GGAATGTGGTCGAGGTTCGTCGCTGGGGAGCAGGGGGGTTGGTGGCAGTG
GGAAGAACTGAGTATGATGCAGAAACGATGCGTTTTGGAGTGCGCAAGAC
CAATGCCCTTGGATTTGTCATCTCCCACACATTTGACCCAGCTCTCGGTA
CCATTCTCTCTACCACCAATGAAAACAACATCACTACCAAGTACAAAACC
AACCTCCTTGGCCAACCACTCGAAACGATCCGCGCCGACGGCGCAATAGA
ATCGATTGAGCGGCGATGGTGTTACACGCCAGATTTTAATACAGGAGCCC
TTCTTGGACAGGTAGAGGGTGTTGAAGATGCCAAGTACACTCATGGGATT
AACAAGACGTACGATGCCGTCGGGAATGTGGTCGAGGTTCGTCGCTGGGG
AGCAGGGGGGTTGGTGGCAGTGGGAAGAACTGAGTATGATGCAGAAACGA
TGCGTTTTGGAGTGCGCAAGACCAATGCCCTTGGATTTGTCATCTCCCAC
ACATTTGACCCAGCTCTCGGTACCATTCTCTCTACCACCAATGAAAACAA
CATCACTACCAAGTACAAAACCAACCTCCTTGGCCAACCACTCGAAACGA
TCCGCGCCGACGGCGCAATAGAATCGATTGAGCGGCGATGGTGT
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