mRNA_M-pyrifera_M_contig115696.3254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115696.3254.1
Unique NamemRNA_M-pyrifera_M_contig115696.3254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A7V3DFX6_9BACT (ABC transporter ATP-binding protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V3DFX6_9BACT)

HSP 1 Score: 216 bits (551), Expect = 3.380e-69
Identity = 105/138 (76.09%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            GFVFQTFNLL PFTALQNV+LGMRFS+T+P  EWK R T+LLERVGLGHRLHSKP T+SVGE+QRVAIARALAN+Q IV ADEPTGSLDP+T+D VM+LL+EMC EENVTLLLVTH  E+A R   +F+C GLV EV+
Sbjct:   82 GFVFQTFNLLAPFTALQNVMLGMRFSDTIPQAEWKSRATQLLERVGLGHRLHSKPATMSVGERQRVAIARALANRQTIVAADEPTGSLDPKTADSVMDLLLEMCREENVTLLLVTHAQEIARRCAEQFDCTGLVKEVS 219          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A7Z9LQ67_9BACT (ABC transporter ATP-binding protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9LQ67_9BACT)

HSP 1 Score: 207 bits (526), Expect = 2.130e-65
Identity = 102/138 (73.91%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            GFVFQTFNLL PFTALQNVLLGM+FS+T P +EWK R T LLERVGLGHRL+SKPTT+SVGEQQRVAIARALANKQ++VVADEPTGSLDP+T+  VM LL+EMC EE VT+L+VTH+  +A  L  RF+C  LV EV+
Sbjct:   82 GFVFQTFNLLKPFTALQNVLLGMQFSDTRPPKEWKPRATALLERVGLGHRLNSKPTTMSVGEQQRVAIARALANKQQVVVADEPTGSLDPKTAASVMELLLEMCREEEVTMLMVTHDKTIADSLPERFDCTELVREVS 219          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A2A5E3T6_9BACT (ABC transporter ATP-binding protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5E3T6_9BACT)

HSP 1 Score: 203 bits (517), Expect = 4.950e-64
Identity = 98/138 (71.01%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            GF+FQTFNLL PFTALQNV+LGM+FS+T P +EWK R  ELL+RVGL HR+HSKPTT+SVGEQQRVAIARALANKQ+IVVADEPTGSLDP+T+  VM+LL+EMC EE VT+L+VTH+  +A  L+  F+C  LV EV+
Sbjct:   82 GFIFQTFNLLKPFTALQNVMLGMQFSDTRPQKEWKPRSIELLDRVGLSHRIHSKPTTMSVGEQQRVAIARALANKQKIVVADEPTGSLDPKTAASVMDLLLEMCREEAVTMLMVTHDKSIADSLETHFDCSELVQEVS 219          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A1V6F1S2_9BACT (Lipoprotein-releasing system ATP-binding protein LolD n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6F1S2_9BACT)

HSP 1 Score: 194 bits (494), Expect = 1.540e-60
Identity = 94/138 (68.12%), Postives = 112/138 (81.16%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            GFVFQTFNLL PFT LQNV+LGMRF++ +P +EWK R   +LERVGL HRL SKP TLSVGE+QRVAIARALAN  +++VADEPTGSLDP+T+D VM LL+E+C +E VTLLLVTH+  +A RL   F+C GLV E A
Sbjct:   82 GFVFQTFNLLAPFTVLQNVILGMRFADVIPEKEWKPRSLAMLERVGLAHRLKSKPGTLSVGERQRVAIARALANNPKLIVADEPTGSLDPKTADAVMTLLLELCEQEQVTLLLVTHDKGIADRLPETFDCSGLVEEAA 219          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A7C1GYH9_9BACT (ABC transporter ATP-binding protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1GYH9_9BACT)

HSP 1 Score: 194 bits (493), Expect = 2.180e-60
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEV 411
            GFVFQTFNLL PFTALQNV++GMRF++ +P +EWK+R   +L+RVGLGHRLHSKP TLSVGE+QRVAIARAL N+  ++VADEPTGSLDP+T+D VM LL+E+C +E VTLLLVTH+  +A RL + F+C  LV E 
Sbjct:   82 GFVFQTFNLLAPFTALQNVIVGMRFADVIPDKEWKERARAMLDRVGLGHRLHSKPGTLSVGERQRVAIARALVNQPRLIVADEPTGSLDPKTADGVMALLLELCEQEKVTLLLVTHDRSIADRLPKIFDCTDLVKEA 218          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A847G7Q9_9BACT (ABC transporter ATP-binding protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847G7Q9_9BACT)

HSP 1 Score: 192 bits (489), Expect = 8.830e-60
Identity = 93/138 (67.39%), Postives = 113/138 (81.88%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            GF+FQTFNLL PFTA QNV+LGMRF++ +P +EW  R T +LERV LGHR+HSKP TLSVGE+QRVAIARAL N+ +++VADEPTGSLDP+T++ VM LL+E+C EE VTLLLVTH+   A RL   F+C GLV EVA
Sbjct:   82 GFIFQTFNLLGPFTARQNVMLGMRFADVVPEKEWGARATAMLERVRLGHRMHSKPATLSVGERQRVAIARALVNRPKLIVADEPTGSLDPKTAESVMALLLELCAEEGVTLLLVTHDRATAERLPSVFDCSGLVREVA 219          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A1V5YVJ2_9BACT (Lipoprotein-releasing system ATP-binding protein LolD n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YVJ2_9BACT)

HSP 1 Score: 187 bits (476), Expect = 8.290e-58
Identity = 94/138 (68.12%), Postives = 109/138 (78.99%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            GFVFQTFNLL PF ALQNVLLGMRFS+T+P +EWK R   +L RVGL  RLHSKP TLSVGE+QRVAIARAL NK  ++VADEPTGSLDP+T+  VM LL+E+C EE VTLLLVTH+  +A +L   F+C GL  E A
Sbjct:   82 GFVFQTFNLLPPFNALQNVLLGMRFSDTIPEQEWKSRAVAMLNRVGLERRLHSKPGTLSVGERQRVAIARALVNKPRLIVADEPTGSLDPKTAASVMALLLELCEEEKVTLLLVTHDRGIAEQLPDLFDCTGLAREDA 219          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A7C4V0K8_9BACT (ABC transporter ATP-binding protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4V0K8_9BACT)

HSP 1 Score: 175 bits (443), Expect = 8.120e-53
Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTE 408
            GF+FQTFNLL PF+ALQNV++GMRFS T+PS  W      LLERVGLG++L +KP+ LSVGEQQRVAIARA+ANKQ+I+VADEPTGSLDP+T+++V+ LL+E+  E  VTLLLVTH+  +A R    + C  LV E
Sbjct:   82 GFIFQTFNLLPPFSALQNVVIGMRFSSTVPSSIWNKTAKSLLERVGLGNKLSNKPSQLSVGEQQRVAIARAVANKQKIIVADEPTGSLDPKTANKVLELLLELSDEHGVTLLLVTHDKSIADRFPIIYNCSNLVKE 217          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A7Y5CBA9_9BACT (ATP-binding cassette domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CBA9_9BACT)

HSP 1 Score: 161 bits (407), Expect = 1.310e-47
Identity = 83/138 (60.14%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            GFVFQTFNLL PFTALQNV+LGMRFS+T P+REW++  T LLERVGLGHRLH++P T+SVGE+QRVAIARALA                      VM+LL+E+CGE  VTLLLVTH+ ++A  L  RF+C GL  E A
Sbjct:   82 GFVFQTFNLLGPFTALQNVMLGMRFSDTRPAREWREHATHLLERVGLGHRLHARPGTMSVGERQRVAIARALAAG--------------------VMDLLLELCGENKVTLLLVTHDQKIAEHLPNRFDCTGLARETA 199          
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Match: A0A351FFI6_9BACT (ABC transporter n=2 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A351FFI6_9BACT)

HSP 1 Score: 154 bits (389), Expect = 1.820e-44
Identity = 78/138 (56.52%), Postives = 103/138 (74.64%), Query Frame = 1
Query:    1 GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHRLHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLLIEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVA 414
            G VFQTF+LL PFTAL+NV++G+RF     S+  K++ TE+L+RVGLG R+H++P  LSVGE+QRVAIARAL     I++ADEPTGSLDP T  EV +LL E+  E+  TL+LVTH+  LA+R+ R F+C GLV   +
Sbjct:   87 GMVFQTFHLLAPFTALENVVIGLRFGARTRSK-LKEKATEVLDRVGLGDRIHARPHRLSVGERQRVAIARALVGDASILLADEPTGSLDPETGQEVFHLLREVAEEDRRTLILVTHDPALATRMPRHFDCSGLVRSAS 223          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115696.3254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V3DFX6_9BACT3.380e-6976.09ABC transporter ATP-binding protein n=1 Tax=Candid... [more]
A0A7Z9LQ67_9BACT2.130e-6573.91ABC transporter ATP-binding protein n=1 Tax=Candid... [more]
A0A2A5E3T6_9BACT4.950e-6471.01ABC transporter ATP-binding protein n=1 Tax=Candid... [more]
A0A1V6F1S2_9BACT1.540e-6068.12Lipoprotein-releasing system ATP-binding protein L... [more]
A0A7C1GYH9_9BACT2.180e-6067.15ABC transporter ATP-binding protein n=1 Tax=Candid... [more]
A0A847G7Q9_9BACT8.830e-6067.39ABC transporter ATP-binding protein n=1 Tax=Candid... [more]
A0A1V5YVJ2_9BACT8.290e-5868.12Lipoprotein-releasing system ATP-binding protein L... [more]
A0A7C4V0K8_9BACT8.120e-5363.24ABC transporter ATP-binding protein n=1 Tax=Candid... [more]
A0A7Y5CBA9_9BACT1.310e-4760.14ATP-binding cassette domain-containing protein n=1... [more]
A0A351FFI6_9BACT1.820e-4456.52ABC transporter n=2 Tax=Opitutae bacterium TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115696contigM-pyrifera_M_contig115696:3..422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score144.1
Seed ortholog evalue5.1e-32
Seed eggNOG ortholog1007103.AFHW01000221_gene2654
KEGG koko:K02003
KEGG TC3.A.1
KEGG ModuleM00258
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-binding protein
EggNOG OGs1TR90@1239,26UI1@186822,4HDK0@91061,COG1136@1,COG1136@2
COG Functional cat.V
Best tax levelPaenibacillaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.097446-CDS-M-pyrifera_M_contig115696:2..4221622815673.097446-CDS-M-pyrifera_M_contig115696:2..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115696 3..422 +
1692277515.275428-CDS-M-pyrifera_M_contig115696:2..4221692277515.275428-CDS-M-pyrifera_M_contig115696:2..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115696 3..422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115696.3254.1prot_M-pyrifera_M_contig115696.3254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115696 3..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115696.3254.1

>prot_M-pyrifera_M_contig115696.3254.1 ID=prot_M-pyrifera_M_contig115696.3254.1|Name=mRNA_M-pyrifera_M_contig115696.3254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
GFVFQTFNLLTPFTALQNVLLGMRFSETLPSREWKDRGTELLERVGLGHR
LHSKPTTLSVGEQQRVAIARALANKQEIVVADEPTGSLDPRTSDEVMNLL
IEMCGEENVTLLLVTHEDELASRLQRRFECRGLVTEVAG*
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mRNA from alignment at M-pyrifera_M_contig115696:3..422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115696.3254.1 ID=mRNA_M-pyrifera_M_contig115696.3254.1|Name=mRNA_M-pyrifera_M_contig115696.3254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig115696:3..422+ (Macrocystis pyrifera P11B4 male)
GGCTTCGTCTTCCAGACATTCAATCTGTTGACCCCGTTCACGGCGCTGCA AAATGTGCTGCTCGGCATGCGCTTCAGCGAAACGCTCCCTTCACGTGAAT GGAAAGATCGCGGCACGGAACTCTTGGAACGGGTGGGGCTAGGCCATCGT TTGCACAGCAAGCCGACCACACTCAGCGTCGGCGAACAACAACGCGTGGC TATCGCGCGCGCGTTGGCAAACAAACAGGAAATTGTGGTCGCCGATGAAC CGACTGGAAGTCTCGACCCGCGCACGTCGGACGAAGTCATGAACTTGCTC ATCGAAATGTGCGGCGAGGAAAATGTGACGTTGCTGCTCGTGACACATGA AGATGAACTGGCGTCCCGCTTACAACGTCGCTTCGAATGCCGCGGCTTGG TCACGGAAGTCGCCGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115696:3..422+

>mRNA_M-pyrifera_M_contig115696.3254.1 ID=mRNA_M-pyrifera_M_contig115696.3254.1|Name=mRNA_M-pyrifera_M_contig115696.3254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig115696:3..422+ (Macrocystis pyrifera P11B4 male)
GGCTTCGTCTTCCAGACATTCAATCTGTTGACCCCGTTCACGGCGCTGCA
AAATGTGCTGCTCGGCATGCGCTTCAGCGAAACGCTCCCTTCACGTGAAT
GGAAAGATCGCGGCACGGAACTCTTGGAACGGGTGGGGCTAGGCCATCGT
TTGCACAGCAAGCCGACCACACTCAGCGTCGGCGAACAACAACGCGTGGC
TATCGCGCGCGCGTTGGCAAACAAACAGGAAATTGTGGTCGCCGATGAAC
CGACTGGAAGTCTCGACCCGCGCACGTCGGACGAAGTCATGAACTTGCTC
ATCGAAATGTGCGGCGAGGAAAATGTGACGTTGCTGCTCGTGACACATGA
AGATGAACTGGCGTCCCGCTTACAACGTCGCTTCGAATGCCGCGGCTTGG
TCACGGAAGTCGCCGGATGAGGCTTCGTCTTCCAGACATTCAATCTGTTG
ACCCCGTTCACGGCGCTGCAAAATGTGCTGCTCGGCATGCGCTTCAGCGA
AACGCTCCCTTCACGTGAATGGAAAGATCGCGGCACGGAACTCTTGGAAC
GGGTGGGGCTAGGCCATCGTTTGCACAGCAAGCCGACCACACTCAGCGTC
GGCGAACAACAACGCGTGGCTATCGCGCGCGCGTTGGCAAACAAACAGGA
AATTGTGGTCGCCGATGAACCGACTGGAAGTCTCGACCCGCGCACGTCGG
ACGAAGTCATGAACTTGCTCATCGAAATGTGCGGCGAGGAAAATGTGACG
TTGCTGCTCGTGACACATGAAGATGAACTGGCGTCCCGCTTACAACGTCG
CTTCGAATGCCGCGGCTTGGTCACGGAAGTCGCCGGATGA
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