mRNA_M-pyrifera_M_contig115689.3252.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115689.3252.1
Unique NamemRNA_M-pyrifera_M_contig115689.3252.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A150FUB2_GONPE (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FUB2_GONPE)

HSP 1 Score: 109 bits (272), Expect = 7.290e-26
Identity = 60/140 (42.86%), Postives = 86/140 (61.43%), Query Frame = 1 
Query:    1 QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASSRDPKASSEADR 420
            QK+LS+   +G     +  K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VA++LG +YG+  T AL  TQ FHD+R+  Q   SP+T  QR QV RLL   +A + S+  P A + A R
Sbjct:   75 QKILSKAHEQGNPKITQ-QKIDFLHLPIIDGNVTTDSAMNRLAEDCMERILRGERLYIHCWGGHGRTGTLVAVLLGRLYGLPYTNALRYTQAFHDSRVYPQGVRSPQTPVQRAQVRRLLASQSAGSLSTPAPMAPAAAAR 213
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A8J4D377_9CHLO (TYR_PHOSPHATASE_2 domain-containing protein (Fragment) n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D377_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 2.950e-25
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    1 QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASS 387
            QK+LS+   +G     +  K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VAI+LG +YG+  T AL  TQ FHD+R+  Q   SP+T  QR QV RLL   +A + SS
Sbjct:  150 QKILSKAHEQGNSKITQ-QKIDFLHLPIIDGNVTTDSAMNRLAEDCMERILRGERLYIHCWGGHGRTGTLVAILLGRLYGLPYTNALRYTQAFHDSRVYPQGVRSPQTPVQRAQVRRLLASQSAGSISS 277
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A836BPC8_9CHLO (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BPC8_9CHLO)

HSP 1 Score: 106 bits (265), Expect = 9.100e-25
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:    1 QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASS 387
            QK+LS+   +G     +  K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VAI+LG +YG+  T AL  TQ FHD+R+  Q   SP+T  QR QV RLL   +A   SS
Sbjct:   75 QKILSKAHEQGNPKITQ-QKIDFLHLPIIDGNVTTDSAMNRLAEDCMERILRGERLYIHCWGGHGRTGTLVAILLGRLYGLPYTNALRYTQAFHDSRVYPQGVRSPQTPVQRAQVRRLLASQSAGTISS 202
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A8J4AQZ3_9CHLO (TYR_PHOSPHATASE_2 domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AQZ3_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 1.310e-24
Identity = 58/129 (44.96%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    1 QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASS 387
            QK+LS+   +G     +  K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VAI+LG +YG+  T AL  TQ FHD+R+  Q   SP+T  QR QV RLL   +A + SS
Sbjct:   95 QKILSKAHEQGNSKITQ-QKIDFLHLPIIDGNVTTDSAMNRLAEDCMERILRGERLYIHCWGGHGRTGTLVAILLGRLYGLPYTNALRYTQAFHDSRVYPQGVRSPQTPVQRAQVRRLLASQSAGSISS 222
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A7S0RIB1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RIB1_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 2.150e-24
Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    1 QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASS 387
            QK+LS+    G     +  K++F+  PI D  V  D A+ +LV   +ER+  G+ +Y+HC GGHGRTGT+VA++LG +Y +  T AL  TQ FHD+R+  Q   SP+T  QR QV RLL   +A A+S+
Sbjct:   93 QKILSKAHETGNPKITQ-QKIDFLHLPIIDGNVTTDSAMNRLVEDCMERVLKGEKLYIHCWGGHGRTGTLVAVMLGRLYNLPYTTALRYTQAFHDSRVYPQGVRSPQTPVQRAQVRRLLAAQSAVASSA 220
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A2K3DIS4_CHLRE (TYR_PHOSPHATASE_2 domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DIS4_CHLRE)

HSP 1 Score: 105 bits (262), Expect = 2.880e-24
Identity = 57/129 (44.19%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:    1 QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASS 387
            QK+LS+   +G     +  K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VAI+LG +YG+  T AL  TQ FHD R+  Q   SP+T  QR QV RLL   +A + S+
Sbjct:   75 QKILSKAHEQGNPKITQ-QKIDFLHLPIIDGNVTTDSAMNRLAEDCMERILRGERLYIHCWGGHGRTGTLVAILLGRLYGLPYTNALRYTQAFHDARVYPQGVRSPQTPVQRAQVRRLLASQSAGSIST 202
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A8J4GQL3_9CHLO (TYR_PHOSPHATASE_2 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GQL3_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 3.040e-24
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:   58 KLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASS 387
            K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VAI+LG +YG+  T AL  TQ FHD+R+  Q   SP+T  QR QV RLL   +A + SS
Sbjct:   43 KIDFLHLPIIDGNVTTDSAMNRLAEDCMERILRGERLYIHCWGGHGRTGTLVAILLGRLYGLPYTNALRYTQAFHDSRVYPQGVRSPQTPVQRAQVRRLLASQSAGSISS 152
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A8J4GMZ9_9CHLO (TYR_PHOSPHATASE_2 domain-containing protein (Fragment) n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GMZ9_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 1.490e-23
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:   58 KLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAASS 387
            K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VAI+LG +YG+  T AL  TQ FHD+R+  Q   SP+T  QR QV RLL   +A + SS
Sbjct:  254 KIDFLHLPIIDGNVTTDSAMNRLAEDCMERILRGERLYIHCWGGHGRTGTLVAILLGRLYGLPYTNALRYTQAFHDSRVYPQGVRSPQTPVQRAQVRRLLASQSAGSISS 363
[Close]
BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A6B2LIA9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LIA9_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 3.530e-23
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:   52 VDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGS----PETADQRLQVHRLL 357
            +++L++V  PI D  VA D  +  LV  + +RL++G+ +Y+HC+GGHGRTGTVVA+ LG  +G+ +  ALDL+Q+ HD RID++        PET DQ+ QV++L+
Sbjct:   86 LNQLKYVHIPIYDKQVAPDNVVSDLVTDIQKRLKSGEVVYIHCKGGHGRTGTVVAVFLGKTFGLDAWTALDLSQKIHDYRIDAKKQPGRFQCPETHDQKSQVYKLI 191
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BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Match: A0A7S3QKJ4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QKJ4_DUNTE)

HSP 1 Score: 100 bits (250), Expect = 9.360e-23
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = 1 
Query:    1 QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERLRAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDSQMAGSPETADQRLQVHRLLKPNAAAAA 381
            QK+LS+    G     +  K++F+  PI D  V  D A+ +L    +ER+  G+ +Y+HC GGHGRTGT+VA++LG +Y +  T AL  TQ FHD R+  Q   SP+T  QR QV RLL    A +A
Sbjct:   89 QKILSKAHETGNPKITQ-QKIDFLHLPIIDGNVTTDSAMNRLAEDCMERVLRGEKLYIHCWGGHGRTGTLVAVMLGRLYNLPYTTALRYTQAFHDARVYPQGVRSPQTPVQRAQVRRLLAGQGATSA 214
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115689.3252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A150FUB2_GONPE7.290e-2642.86TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A8J4D377_9CHLO2.950e-2544.96TYR_PHOSPHATASE_2 domain-containing protein (Fragm... [more]
A0A836BPC8_9CHLO9.100e-2544.96TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
A0A8J4AQZ3_9CHLO1.310e-2444.96TYR_PHOSPHATASE_2 domain-containing protein n=2 Ta... [more]
A0A7S0RIB1_9CHLO2.150e-2444.19Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A2K3DIS4_CHLRE2.880e-2444.19TYR_PHOSPHATASE_2 domain-containing protein n=3 Ta... [more]
A0A8J4GQL3_9CHLO3.040e-2448.18TYR_PHOSPHATASE_2 domain-containing protein n=2 Ta... [more]
A0A8J4GMZ9_9CHLO1.490e-2348.18TYR_PHOSPHATASE_2 domain-containing protein (Fragm... [more]
A0A6B2LIA9_9EUKA3.530e-2345.28Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S3QKJ4_DUNTE9.360e-2343.31Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115689contigM-pyrifera_M_contig115689:119..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.5
Seed ortholog evalue6.7e-19
Seed eggNOG ortholog3055.EDP07070
Hectar predicted targeting categoryother localisation
EggNOG OGs2BVII@1,2S2A7@2759,34JX9@3041,37YK7@33090
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.0065022-CDS-M-pyrifera_M_contig115689:118..5501622815673.0065022-CDS-M-pyrifera_M_contig115689:118..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115689 119..550 +
1692277515.2355342-CDS-M-pyrifera_M_contig115689:118..5501692277515.2355342-CDS-M-pyrifera_M_contig115689:118..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115689 119..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115689.3252.1prot_M-pyrifera_M_contig115689.3252.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115689 119..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115689.3252.1

>prot_M-pyrifera_M_contig115689.3252.1 ID=prot_M-pyrifera_M_contig115689.3252.1|Name=mRNA_M-pyrifera_M_contig115689.3252.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
QKVLSEWEAKGKVGAGEVDKLEFVDFPIPDFGVADDEALKKLVVAVLERL
RAGKPMYLHCRGGHGRTGTVVAIVLGAVYGIASTEALDLTQRFHDTRIDS
QMAGSPETADQRLQVHRLLKPNAAAAASSRDPKASSEADRRWW*
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mRNA from alignment at M-pyrifera_M_contig115689:119..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115689.3252.1 ID=mRNA_M-pyrifera_M_contig115689.3252.1|Name=mRNA_M-pyrifera_M_contig115689.3252.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig115689:119..550+ (Macrocystis pyrifera P11B4 male)
CAGAAAGTCCTGTCCGAATGGGAAGCAAAAGGGAAGGTTGGGGCAGGAGA
AGTGGACAAGTTGGAGTTTGTCGATTTTCCCATCCCCGATTTTGGTGTGG
CAGATGATGAAGCACTCAAGAAGCTGGTCGTTGCTGTTTTGGAGCGTTTG
CGCGCAGGCAAACCCATGTACCTTCACTGCAGAGGAGGGCATGGTCGTAC
TGGCACAGTCGTTGCCATTGTTCTGGGAGCAGTGTACGGAATTGCTTCCA
CTGAAGCTCTCGACCTCACACAACGCTTCCACGACACTCGCATTGACAGC
CAAATGGCCGGGAGCCCTGAAACCGCAGACCAGCGTCTTCAAGTTCATCG
TCTCCTCAAGCCCAATGCAGCCGCAGCAGCATCCTCCAGAGACCCCAAAG
CCTCCTCTGAAGCAGACAGACGTTGGTGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115689:119..550+

>mRNA_M-pyrifera_M_contig115689.3252.1 ID=mRNA_M-pyrifera_M_contig115689.3252.1|Name=mRNA_M-pyrifera_M_contig115689.3252.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig115689:119..550+ (Macrocystis pyrifera P11B4 male)
CAGAAAGTCCTGTCCGAATGGGAAGCAAAAGGGAAGGTTGGGGCAGGAGA
AGTGGACAAGTTGGAGTTTGTCGATTTTCCCATCCCCGATTTTGGTGTGG
CAGATGATGAAGCACTCAAGAAGCTGGTCGTTGCTGTTTTGGAGCGTTTG
CGCGCAGGCAAACCCATGTACCTTCACTGCAGAGGAGGGCATGGTCGTAC
TGGCACAGTCGTTGCCATTGTTCTGGGAGCAGTGTACGGAATTGCTTCCA
CTGAAGCTCTCGACCTCACACAACGCTTCCACGACACTCGCATTGACAGC
CAAATGGCCGGGAGCCCTGAAACCGCAGACCAGCGTCTTCAAGTTCATCG
TCTCCTCAAGCCCAATGCAGCCGCAGCAGCATCCTCCAGAGACCCCAAAG
CCTCCTCTGAAGCAGACAGACGTTGGTGGTAACAGAAAGTCCTGTCCGAA
TGGGAAGCAAAAGGGAAGGTTGGGGCAGGAGAAGTGGACAAGTTGGAGTT
TGTCGATTTTCCCATCCCCGATTTTGGTGTGGCAGATGATGAAGCACTCA
AGAAGCTGGTCGTTGCTGTTTTGGAGCGTTTGCGCGCAGGCAAACCCATG
TACCTTCACTGCAGAGGAGGGCATGGTCGTACTGGCACAGTCGTTGCCAT
TGTTCTGGGAGCAGTGTACGGAATTGCTTCCACTGAAGCTCTCGACCTCA
CACAACGCTTCCACGACACTCGCATTGACAGCCAAATGGCCGGGAGCCCT
GAAACCGCAGACCAGCGTCTTCAAGTTCATCGTCTCCTCAAGCCCAATGC
AGCCGCAGCAGCATCCTCCAGAGACCCCAAAGCCTCCTCTGAAGCAGACA
GACGTTGGTGGTAA
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