mRNA_M-pyrifera_M_contig101577.325.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101577.325.1
Unique NamemRNA_M-pyrifera_M_contig101577.325.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: UPI0014215686 (50S ribosomal protein L3 n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014215686)

HSP 1 Score: 204 bits (520), Expect = 2.870e-64
Identity = 98/131 (74.81%), Postives = 113/131 (86.26%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKL 393
            REFRTDGEDH  EVGQ LT + LA++  VDVI  SKGRGTAGVMKRHNFSGQRA+HGVKRVHRHGGSIGMSADP+RV KGTRM GR+GNA+VTVRNL+VV++D E+NM+LV G VPGP G +V +R T+KL
Sbjct:  108 REFRTDGEDHSLEVGQTLTADFLADLKRVDVIGTSKGRGTAGVMKRHNFSGQRATHGVKRVHRHGGSIGMSADPSRVLKGTRMAGRYGNARVTVRNLQVVKVDAENNMILVKGAVPGPKGGYVVVRHTSKL 238
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A517ZWT0_9PLAN (50S ribosomal protein L3 n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZWT0_9PLAN)

HSP 1 Score: 202 bits (515), Expect = 1.060e-63
Identity = 99/132 (75.00%), Postives = 114/132 (86.36%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG 396
            REFRTDGE    EVGQELTV+L A+VS+VDVI+ SKGRGTAGVMKRHNF+GQRASHGVKRVHRHGGSIG SADPARV KGT+M GR+GNA++TVRNL++ R+D E+ +LLV G VPGP G +V IR TNKLG
Sbjct:  100 REFRTDGEGCDCEVGQELTVDLFADVSNVDVIATSKGRGTAGVMKRHNFAGQRASHGVKRVHRHGGSIGQSADPARVIKGTKMAGRYGNARITVRNLELTRVDGENGLLLVAGSVPGPKGGYVMIRETNKLG 231
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A3B8PQG2_9PLAN (50S ribosomal protein L3 n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8PQG2_9PLAN)

HSP 1 Score: 201 bits (512), Expect = 4.020e-63
Identity = 99/132 (75.00%), Postives = 112/132 (84.85%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG 396
            REFR DGE+   EVGQ LTVEL AE+SHVDV+  SKGRG AGVMKRHNF+GQRASHGVKRVHRHGG IGMSADPARV KGTRMPGR GNA+ TVR+++VVR+D E+N +L+ GGVPGP G +V IR TNKLG
Sbjct:  109 REFRVDGENVDLEVGQTLTVELFAEMSHVDVVGTSKGRGFAGVMKRHNFAGQRASHGVKRVHRHGGGIGMSADPARVLKGTRMPGRFGNARSTVRHMQVVRVDAETNSMLIKGGVPGPPGGYVLIRPTNKLG 240
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A2E8FGN1_9PLAN (50S ribosomal protein L3 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8FGN1_9PLAN)

HSP 1 Score: 200 bits (508), Expect = 1.620e-62
Identity = 99/132 (75.00%), Postives = 113/132 (85.61%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG 396
            REFR DGE+   EVGQ LTV+L AE +HVDV+  SKGRGTAGVMKRHNFSGQRASHGVKRVHRH GSIGMSADPARV KGTRM GR+GNA+ TVR+L+VVR+D E+N++LV GGVPGPNG ++ IR TNK G
Sbjct:  109 REFRIDGEEVDLEVGQTLTVDLFAETTHVDVVGTSKGRGTAGVMKRHNFSGQRASHGVKRVHRHAGSIGMSADPARVPKGTRMAGRYGNARSTVRHLQVVRVDNENNVMLVRGGVPGPNGGYLLIRPTNKTG 240
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: UPI001EE94F7E (50S ribosomal protein L3 n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE94F7E)

HSP 1 Score: 198 bits (503), Expect = 7.050e-62
Identity = 95/130 (73.08%), Postives = 111/130 (85.38%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 390
            REFRTDGE+HG +VG  LTV  LAE++HVDVI  SKGRGTAGVMKRHNFSGQRASHGVK+VHRH GSIG SADP+RV KGTRM G++GNAQ+TVRNLKVV++  E N++LV G VPGP+G +V +R TNK
Sbjct:  100 REFRTDGEEHGLDVGSVLTVNHLAEIAHVDVIGTSKGRGTAGVMKRHNFSGQRASHGVKKVHRHAGSIGQSADPSRVLKGTRMAGQYGNAQITVRNLKVVKVIEEENLILVGGAVPGPSGGYVLVRPTNK 229
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A518IKB9_9PLAN (50S ribosomal protein L3 n=19 Tax=Planctomycetaceae TaxID=126 RepID=A0A518IKB9_9PLAN)

HSP 1 Score: 197 bits (502), Expect = 9.400e-62
Identity = 95/130 (73.08%), Postives = 110/130 (84.62%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 390
            +EFRTDGE+HG EVG ELTV + ++V+H+DVI  SKGRG AGVMKRHNFSGQRASHGVKRVHRHGGSIG SADP+RV KGTRM GR+G  Q+TVR+LKVVR+D E+ +LLV G VPGPNG  + IR TNK
Sbjct:   99 KEFRTDGEEHGCEVGSELTVSVFSDVTHIDVIGTSKGRGFAGVMKRHNFSGQRASHGVKRVHRHGGSIGQSADPSRVMKGTRMGGRYGGKQITVRHLKVVRVDEENGLLLVRGAVPGPNGGDLVIRHTNK 228
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A3B1DXA9_9ZZZZ (LSU ribosomal protein L3p (L3e) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DXA9_9ZZZZ)

HSP 1 Score: 197 bits (501), Expect = 1.510e-61
Identity = 96/130 (73.85%), Postives = 110/130 (84.62%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 390
            REFRTDGE+HG EVGQEL   L AE S +DVISISKGRG AGVMKRHNFSGQRA+HGVKRVHRHGGSIGMSADPARV KGTRM GR+G  Q+T+R+L VVR+D E+N++L+ G VPGPNG  V +R+T K
Sbjct:  101 REFRTDGEEHGCEVGQELAAGLFAETSFLDVISISKGRGFAGVMKRHNFSGQRATHGVKRVHRHGGSIGMSADPARVLKGTRMGGRYGGKQITMRHLSVVRVDEENNLILLKGSVPGPNGGVVLLRQTTK 230
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A517P9I2_9PLAN (50S ribosomal protein L3 n=2 Tax=Alienimonas TaxID=2714737 RepID=A0A517P9I2_9PLAN)

HSP 1 Score: 197 bits (501), Expect = 1.660e-61
Identity = 94/130 (72.31%), Postives = 109/130 (83.85%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 390
            REFRTDGEDHG  VG ELTVE LAE+  +DV+  SKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIG SADP+RV KGT+MPGR+GN +VTVR L++VR+D E+N +L+ G VPGPNG  V++  T K
Sbjct:  100 REFRTDGEDHGLSVGDELTVEHLAELKRIDVVGTSKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGQSADPSRVMKGTKMPGRYGNDRVTVRFLEIVRVDAENNSVLLRGAVPGPNGGLVELTHTTK 229
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BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A836REN6_9PLAN (50S ribosomal protein L3 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836REN6_9PLAN)

HSP 1 Score: 194 bits (492), Expect = 1.700e-61
Identity = 98/131 (74.81%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNKL 393
            REFRTDGE    +VG  LTV L AEV +VDVI  SKGRGTAGVMKRHNF GQRA+HGVKRVHRH GSIGMSADP+RV KGTRM GR+G+++VTVR+LKVVRID E+NMLLV G VPGPNG +V IR+TNK+
Sbjct:    8 REFRTDGEAIDLKVGDALTVGLFAEVPYVDVIGTSKGRGTAGVMKRHNFRGQRATHGVKRVHRHPGSIGMSADPSRVLKGTRMAGRYGHSRVTVRHLKVVRIDEENNMLLVKGAVPGPNGGYVVIRQTNKV 138
[Close]
BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Match: A0A350K4F0_9PLAN (50S ribosomal protein L3 (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K4F0_9PLAN)

HSP 1 Score: 192 bits (488), Expect = 5.690e-61
Identity = 95/130 (73.08%), Postives = 108/130 (83.08%), Query Frame = 1 
Query:    1 REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFSGQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVVRIDPESNMLLVYGGVPGPNGSFVQIRRTNK 390
            +EFRTDGE HG EVG ELTV + A+V  +DVI  SKGRG AGVMKRHNFSGQRA+HGVKRVHRHGGSIGMSADP+RV KGTRM GR+G  Q+TVR+LKVVR+D E+ +LLV G VPGPNG  + IR TNK
Sbjct:    2 KEFRTDGEVHGCEVGGELTVSVFADVPFIDVIGTSKGRGFAGVMKRHNFSGQRATHGVKRVHRHGGSIGMSADPSRVLKGTRMGGRYGGKQITVRHLKVVRVDEENGVLLVRGAVPGPNGGDLVIRHTNK 131
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101577.325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00142156862.870e-6474.8150S ribosomal protein L3 n=1 Tax=Rubinisphaera sp.... [more]
A0A517ZWT0_9PLAN1.060e-6375.0050S ribosomal protein L3 n=3 Tax=Symmachiella TaxI... [more]
A0A3B8PQG2_9PLAN4.020e-6375.0050S ribosomal protein L3 n=2 Tax=Planctomycetaceae... [more]
A0A2E8FGN1_9PLAN1.620e-6275.0050S ribosomal protein L3 n=1 Tax=Planctomycetaceae... [more]
UPI001EE94F7E7.050e-6273.0850S ribosomal protein L3 n=1 Tax=Rubinisphaera sp.... [more]
A0A518IKB9_9PLAN9.400e-6273.0850S ribosomal protein L3 n=19 Tax=Planctomycetacea... [more]
A0A3B1DXA9_9ZZZZ1.510e-6173.85LSU ribosomal protein L3p (L3e) n=1 Tax=hydrotherm... [more]
A0A517P9I2_9PLAN1.660e-6172.3150S ribosomal protein L3 n=2 Tax=Alienimonas TaxID... [more]
A0A836REN6_9PLAN1.700e-6174.8150S ribosomal protein L3 n=1 Tax=Planctomycetaceae... [more]
A0A350K4F0_9PLAN5.690e-6173.0850S ribosomal protein L3 (Fragment) n=1 Tax=Planct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101577contigM-pyrifera_M_contig101577:2..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score196.1
Seed ortholog evalue1.1e-47
Seed eggNOG ortholog344747.PM8797T_12198
Preferred namerplC
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015934,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031325,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090069,GO:0090070,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000232,GO:2000234
EggNOG free text desc.One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
EggNOG OGs2IY9T@203682,COG0087@1,COG0087@2
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.2420614-CDS-M-pyrifera_M_contig101577:1..4001622815514.2420614-CDS-M-pyrifera_M_contig101577:1..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101577 2..400 +
1692277445.4850464-CDS-M-pyrifera_M_contig101577:1..4001692277445.4850464-CDS-M-pyrifera_M_contig101577:1..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101577 2..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101577.325.1prot_M-pyrifera_M_contig101577.325.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101577 2..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101577.325.1

>prot_M-pyrifera_M_contig101577.325.1 ID=prot_M-pyrifera_M_contig101577.325.1|Name=mRNA_M-pyrifera_M_contig101577.325.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
REFRTDGEDHGHEVGQELTVELLAEVSHVDVISISKGRGTAGVMKRHNFS
GQRASHGVKRVHRHGGSIGMSADPARVFKGTRMPGRHGNAQVTVRNLKVV
RIDPESNMLLVYGGVPGPNGSFVQIRRTNKLG*
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mRNA from alignment at M-pyrifera_M_contig101577:2..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101577.325.1 ID=mRNA_M-pyrifera_M_contig101577.325.1|Name=mRNA_M-pyrifera_M_contig101577.325.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig101577:2..400+ (Macrocystis pyrifera P11B4 male)
CGAGAGTTTCGGACTGATGGCGAGGATCACGGGCACGAGGTTGGGCAAGA
ATTGACCGTTGAGTTGCTTGCTGAGGTGTCGCATGTTGATGTGATCTCGA
TAAGCAAGGGGCGAGGGACCGCGGGTGTGATGAAGCGTCACAACTTTTCC
GGGCAACGGGCCAGTCATGGTGTCAAGCGGGTTCATCGCCATGGTGGCTC
GATTGGCATGAGTGCTGACCCAGCCCGTGTGTTTAAGGGGACGCGAATGC
CTGGTCGACACGGCAATGCCCAGGTGACGGTGCGTAACCTCAAGGTTGTT
CGTATCGACCCGGAAAGTAATATGCTGCTTGTGTACGGTGGGGTGCCCGG
CCCGAATGGGTCGTTTGTACAGATCCGCCGAACAAACAAGCTTGGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101577:2..400+

>mRNA_M-pyrifera_M_contig101577.325.1 ID=mRNA_M-pyrifera_M_contig101577.325.1|Name=mRNA_M-pyrifera_M_contig101577.325.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig101577:2..400+ (Macrocystis pyrifera P11B4 male)
CGAGAGTTTCGGACTGATGGCGAGGATCACGGGCACGAGGTTGGGCAAGA
ATTGACCGTTGAGTTGCTTGCTGAGGTGTCGCATGTTGATGTGATCTCGA
TAAGCAAGGGGCGAGGGACCGCGGGTGTGATGAAGCGTCACAACTTTTCC
GGGCAACGGGCCAGTCATGGTGTCAAGCGGGTTCATCGCCATGGTGGCTC
GATTGGCATGAGTGCTGACCCAGCCCGTGTGTTTAAGGGGACGCGAATGC
CTGGTCGACACGGCAATGCCCAGGTGACGGTGCGTAACCTCAAGGTTGTT
CGTATCGACCCGGAAAGTAATATGCTGCTTGTGTACGGTGGGGTGCCCGG
CCCGAATGGGTCGTTTGTACAGATCCGCCGAACAAACAAGCTTGGTTAAC
GAGAGTTTCGGACTGATGGCGAGGATCACGGGCACGAGGTTGGGCAAGAA
TTGACCGTTGAGTTGCTTGCTGAGGTGTCGCATGTTGATGTGATCTCGAT
AAGCAAGGGGCGAGGGACCGCGGGTGTGATGAAGCGTCACAACTTTTCCG
GGCAACGGGCCAGTCATGGTGTCAAGCGGGTTCATCGCCATGGTGGCTCG
ATTGGCATGAGTGCTGACCCAGCCCGTGTGTTTAAGGGGACGCGAATGCC
TGGTCGACACGGCAATGCCCAGGTGACGGTGCGTAACCTCAAGGTTGTTC
GTATCGACCCGGAAAGTAATATGCTGCTTGTGTACGGTGGGGTGCCCGGC
CCGAATGGGTCGTTTGTACAGATCCGCCGAACAAACAAGCTTGGTTAA
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