mRNA_M-pyrifera_M_contig115660.3245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115660.3245.1
Unique NamemRNA_M-pyrifera_M_contig115660.3245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: A0A3Q2DA84_CYPVA (CCAAT enhancer binding protein zeta n=5 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DA84_CYPVA)

HSP 1 Score: 120 bits (302), Expect = 4.240e-29
Identity = 62/134 (46.27%), Postives = 93/134 (69.40%), Query Frame = 1 
Query:   10 FVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            FVAAL+    DT+   +  +L    +LL G PEQERALL+ LVNKLGDP  +++AKA ++L  +L +HP MK  V  EV +L+ RP +GA+A+Y++V  LSQ++L+ ++ PLA KLI++Y + F A V+++  E
Sbjct:  324 FVAALDVVAHDTVAATKAKALAAAHELLLGRPEQERALLSQLVNKLGDPDYKMAAKAAHLLETLLHRHPNMKAVVCCEVERLMFRPNIGAKAQYYAVCFLSQVALNHEEAPLASKLIAVYFSFFRACVKKKDVE 457
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: A0A3P9P9A0_POERE (CCAAT enhancer binding protein zeta n=1 Tax=Poecilia reticulata TaxID=8081 RepID=A0A3P9P9A0_POERE)

HSP 1 Score: 120 bits (301), Expect = 5.810e-29
Identity = 63/134 (47.01%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:   10 FVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            FVAAL+    DT+   +  +L    +LL G PEQERALL  +VNKLGDP  +++AKA ++L  +L  HP MK  V  EV +L+ RP +GA+A+Y++V  LSQ+ LS D+ PLA KLI++Y + F A V+++  E
Sbjct:  266 FVAALDEVGHDTVAATKAKALAAAHELLSGRPEQERALLVQVVNKLGDPDYKMAAKAAHLLETLLHHHPNMKAVVCCEVERLMFRPNVGAKAQYYAVCFLSQVMLSHDEAPLAAKLIAVYFSFFGACVKKKDVE 399
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: A0A3B5KZV5_9TELE (CBF domain-containing protein n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5KZV5_9TELE)

HSP 1 Score: 118 bits (296), Expect = 7.930e-29
Identity = 62/135 (45.93%), Postives = 91/135 (67.41%), Query Frame = 1 
Query:    7 RFVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            +FVAAL+    DT+   ++ +L    +LL   PEQERALL  +VNKLGDP  +++AKA ++L  +L  HP MK  V  EV +L+ RP +GA+A+Y++V  LSQ+ LS D+ PLA KLI++Y + F A V+++  E
Sbjct:  252 QFVAALDEVGHDTVGATKVKALTTAHELLSSRPEQERALLVQVVNKLGDPDYKMAAKAAHLLETLLHNHPNMKAVVCCEVERLMFRPNVGAKAQYYAVCFLSQVMLSHDEAPLAAKLIAVYFSFFGACVKKKDVE 386
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: UPI001FACF02B (CCAAT/enhancer-binding protein zeta isoform X1 n=3 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FACF02B)

HSP 1 Score: 119 bits (298), Expect = 1.490e-28
Identity = 61/134 (45.52%), Postives = 90/134 (67.16%), Query Frame = 1 
Query:   10 FVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            FVAAL+    DT+   +  +L    +LLC  PEQERALL  +VNKLGDP  + +AKA ++L  +L +HP MK  V  EV +L+ RP +GA+A+Y+++  LSQ+ LS ++ PLA KLI++Y + F A V+++  E
Sbjct:  322 FVAALDVVAHDTVAATKTKALAAAHELLCSRPEQERALLIQVVNKLGDPEYKTAAKASHLLETLLHRHPNMKTVVCCEVERLMFRPNIGAKAQYYAICFLSQVMLSHEEAPLAAKLIAVYFSFFRACVKKKDVE 455
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: UPI001F03B3BE (LOW QUALITY PROTEIN: CCAAT/enhancer-binding protein zeta-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03B3BE)

HSP 1 Score: 118 bits (296), Expect = 2.750e-28
Identity = 61/137 (44.53%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    1 YLRFVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            Y  FV  L+R   D + + +   +G V +LLC  PEQE+ LL  LVNK+GDP R+I++KA ++L  +++KHP MK+ V +EV +LL RP +G +A+Y++V  L+QL LS  + PLA  L+S+Y + F A V + Q E
Sbjct:  333 YESFVCGLQRLLHDNVENVRNKVVGVVYELLCEKPEQEKTLLMYLVNKIGDPNRKIASKASHLLGCLVQKHPNMKKVVSQEVERLLYRPNVGLKAQYYAVCFLNQLILSKKESPLASSLVSVYFSLFKAFVDKGQVE 469
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: A0A6P7LUU9_BETSP (CCAAT/enhancer-binding protein zeta isoform X1 n=2 Tax=Betta splendens TaxID=158456 RepID=A0A6P7LUU9_BETSP)

HSP 1 Score: 118 bits (296), Expect = 2.760e-28
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:   10 FVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            FVAAL+    DT+   +  +L    +LLCG PEQE+ALL  +VNKLGDP  + +AKA  +L  +L +HP MK  V  EV +LL RP + A+A+Y++V  LSQ+ LS D+  LA +LISIY + F A V+R+  E
Sbjct:  351 FVAALDLVAHDTVAATKAKALSTAHELLCGRPEQEKALLVQVVNKLGDPEYKTAAKASYLLETLLHQHPNMKAVVCCEVERLLFRPNISAKAQYYAVCFLSQVLLSHDEAELASRLISIYFSFFRACVKRKDIE 484
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: UPI0012EE0119 (CCAAT/enhancer-binding protein zeta n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EE0119)

HSP 1 Score: 118 bits (295), Expect = 3.770e-28
Identity = 63/134 (47.01%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:   10 FVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            FVAAL+    DT+   +  +L    ++LCG PEQERALL  +VNKLGDP  + +AKA  +L  +L KHP MK  V  EV +L+ RP + A+A+Y++V  LSQ+ LS D+  LA KLI+IY + F A V+++  E
Sbjct:  360 FVAALDSVAHDTVAATKAKALATAYEMLCGRPEQERALLGQVVNKLGDPEYKTAAKASYLLESLLHKHPNMKAVVCCEVERLMFRPNISAKAQYYAVCFLSQVMLSHDEALLAAKLIAIYFSFFRACVKKKDIE 493
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: A0A5J5CMX7_9PERO (CBF domain-containing protein n=1 Tax=Etheostoma spectabile TaxID=54343 RepID=A0A5J5CMX7_9PERO)

HSP 1 Score: 117 bits (294), Expect = 4.780e-28
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:   10 FVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            F AAL+    DT+   +  +L    +LLC  PEQERALL  +VNKLGDP  + +AKA  +L  +LRKHP MK  V  EV +++ RP + A+A+Y++V  LSQ+ LS D+  LA KLI+IY + F A V+++  E
Sbjct:  112 FAAALDTVAHDTVAATKAKALATAYELLCNRPEQERALLIQVVNKLGDPEYKTAAKASYLLESLLRKHPNMKAVVCCEVERIMFRPNISAKAQYYAVCFLSQVMLSHDEAELAAKLITIYFSFFRACVKKKDVE 245
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: A0A8C3G146_CYCLU (CCAAT enhancer binding protein zeta n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3G146_CYCLU)

HSP 1 Score: 116 bits (291), Expect = 4.850e-28
Identity = 63/134 (47.01%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:   10 FVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE 411
            FVAAL+    DT+   +  +L    +LLC  PEQERALL  +VNKLGDP  + +AKA ++L  +L KHP MK  V  EV++L+ RP + A+A+Y++V  LSQ+ LS D+  LA KLI+IY + F A V+++  E
Sbjct:  278 FVAALDMVAHDTVAATKAKALTTAHELLCSHPEQERALLGQVVNKLGDPEYKTAAKASHLLESLLHKHPNMKVVVCCEVKRLMFRPNICAKAQYYAVCFLSQVMLSHDEAELAAKLIAIYFSFFRACVKKKDVE 411
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BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Match: A0A6J8DL45_MYTCO (MAK21 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8DL45_MYTCO)

HSP 1 Score: 117 bits (294), Expect = 5.030e-28
Identity = 59/133 (44.36%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:    1 YLRFVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLGDPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSVVVLSQLSLSDDDRPLARKLISIYLARFSALVQR 399
            Y +FV A+E  + DTLL  +  +L  + DLL G PEQE+ LL LLVNK+GDP  ++++K   +L  ++ KHP MK  VV EV +LL RP + ++A+Y+S+  L+QL LS +D+ LA KL+++Y + F + V++
Sbjct:  183 YAKFVNAIELMSHDTLLPTKQKALVIIFDLLVGKPEQEKVLLNLLVNKVGDPNYKLASKTAYLLRRLVEKHPNMKSVVVDEVERLLYRPNISSKAQYYSICFLNQLMLSKEDKLLAAKLVTVYFSFFKSFVKK 315
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115660.3245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q2DA84_CYPVA4.240e-2946.27CCAAT enhancer binding protein zeta n=5 Tax=Cyprin... [more]
A0A3P9P9A0_POERE5.810e-2947.01CCAAT enhancer binding protein zeta n=1 Tax=Poecil... [more]
A0A3B5KZV5_9TELE7.930e-2945.93CBF domain-containing protein n=1 Tax=Xiphophorus ... [more]
UPI001FACF02B1.490e-2845.52CCAAT/enhancer-binding protein zeta isoform X1 n=3... [more]
UPI001F03B3BE2.750e-2844.53LOW QUALITY PROTEIN: CCAAT/enhancer-binding protei... [more]
A0A6P7LUU9_BETSP2.760e-2847.76CCAAT/enhancer-binding protein zeta isoform X1 n=2... [more]
UPI0012EE01193.770e-2847.01CCAAT/enhancer-binding protein zeta n=1 Tax=Anarrh... [more]
A0A5J5CMX7_9PERO4.780e-2846.27CBF domain-containing protein n=1 Tax=Etheostoma s... [more]
A0A8C3G146_CYCLU4.850e-2847.01CCAAT enhancer binding protein zeta n=1 Tax=Cyclop... [more]
A0A6J8DL45_MYTCO5.030e-2844.36MAK21 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8DL45_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115660contigM-pyrifera_M_contig115660:154..564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score120.9
Seed ortholog evalue4.5e-25
Seed eggNOG ortholog48698.ENSPFOP00000003990
Preferred nameCEBPZ
KEGG koko:K14832
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific
EggNOG OGs38CDC@33154,3BH9K@33208,3CTII@33213,48411@7711,4900M@7742,COG5593@1,KOG2038@2759
COG Functional cat.JK
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.5519247-CDS-M-pyrifera_M_contig115660:153..5641622815672.5519247-CDS-M-pyrifera_M_contig115660:153..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115660 154..564 -
1692277515.027201-CDS-M-pyrifera_M_contig115660:153..5641692277515.027201-CDS-M-pyrifera_M_contig115660:153..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115660 154..564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115660.3245.1prot_M-pyrifera_M_contig115660.3245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115660 154..564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115660.3245.1

>prot_M-pyrifera_M_contig115660.3245.1 ID=prot_M-pyrifera_M_contig115660.3245.1|Name=mRNA_M-pyrifera_M_contig115660.3245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
YLRFVAALERATFDTLLHHQLSSLGNVTDLLCGAPEQERALLTLLVNKLG
DPTRRISAKAINMLSDVLRKHPGMKRAVVREVRQLLARPQLGARAEYFSV
VVLSQLSLSDDDRPLARKLISIYLARFSALVQRRQEE
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mRNA from alignment at M-pyrifera_M_contig115660:154..564-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115660.3245.1 ID=mRNA_M-pyrifera_M_contig115660.3245.1|Name=mRNA_M-pyrifera_M_contig115660.3245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig115660:154..564- (Macrocystis pyrifera P11B4 male)
TACCTCCGCTTCGTCGCCGCGCTGGAGCGTGCCACCTTTGACACCTTGCT
GCACCACCAGCTGTCCTCGCTGGGCAACGTCACCGACCTCCTCTGCGGCG
CGCCGGAGCAGGAGCGCGCGCTGCTCACGCTGCTGGTGAACAAGCTGGGA
GACCCGACTCGCCGCATCTCCGCCAAGGCCATCAACATGCTGTCGGACGT
GCTCCGGAAGCACCCAGGCATGAAGCGCGCCGTCGTCCGCGAAGTCAGGC
AGCTGCTCGCCCGCCCGCAGCTCGGCGCTCGCGCTGAGTACTTCTCTGTC
GTCGTCCTCTCGCAGCTCTCGCTGTCAGACGACGACCGCCCGTTGGCCAG
GAAGCTCATCTCCATCTACCTCGCCCGGTTCTCCGCGCTCGTGCAGCGCA
GGCAGGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115660:154..564-

>mRNA_M-pyrifera_M_contig115660.3245.1 ID=mRNA_M-pyrifera_M_contig115660.3245.1|Name=mRNA_M-pyrifera_M_contig115660.3245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig115660:154..564- (Macrocystis pyrifera P11B4 male)
TACCTCCGCTTCGTCGCCGCGCTGGAGCGTGCCACCTTTGACACCTTGCT
GCACCACCAGCTGTCCTCGCTGGGCAACGTCACCGACCTCCTCTGCGGCG
CGCCGGAGCAGGAGCGCGCGCTGCTCACGCTGCTGGTGAACAAGCTGGGA
GACCCGACTCGCCGCATCTCCGCCAAGGCCATCAACATGCTGTCGGACGT
GCTCCGGAAGCACCCAGGCATGAAGCGCGCCGTCGTCCGCGAAGTCAGGC
AGCTGCTCGCCCGCCCGCAGCTCGGCGCTCGCGCTGAGTACTTCTCTGTC
GTCGTCCTCTCGCAGCTCTCGCTGTCAGACGACGACCGCCCGTTGGCCAG
GAAGCTCATCTCCATCTACCTCGCCCGGTTCTCCGCGCTCGTGCAGCGCA
GGCAGGAGGAGTACCTCCGCTTCGTCGCCGCGCTGGAGCGTGCCACCTTT
GACACCTTGCTGCACCACCAGCTGTCCTCGCTGGGCAACGTCACCGACCT
CCTCTGCGGCGCGCCGGAGCAGGAGCGCGCGCTGCTCACGCTGCTGGTGA
ACAAGCTGGGAGACCCGACTCGCCGCATCTCCGCCAAGGCCATCAACATG
CTGTCGGACGTGCTCCGGAAGCACCCAGGCATGAAGCGCGCCGTCGTCCG
CGAAGTCAGGCAGCTGCTCGCCCGCCCGCAGCTCGGCGCTCGCGCTGAGT
ACTTCTCTGTCGTCGTCCTCTCGCAGCTCTCGCTGTCAGACGACGACCGC
CCGTTGGCCAGGAAGCTCATCTCCATCTACCTCGCCCGGTTCTCCGCGCT
CGTGCAGCGCAGGCAGGAGGAG
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