mRNA_M-pyrifera_M_contig115617.3234.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115617.3234.1
Unique NamemRNA_M-pyrifera_M_contig115617.3234.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: W5ME99_LEPOC (Growth hormone inducible transmembrane protein n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5ME99_LEPOC)

HSP 1 Score: 120 bits (301), Expect = 1.230e-30
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
            Q+ +PKH+AW  + G+MGA + P+  +GGPL+++AA  T  IV  LS V   AP++ FL  GGP A+GFGVVFA+SLG M+ P S      LY+VAVYGG  +FS F+LYDTQK
Sbjct:  188 QSPVPKHLAWTLYAGVMGAVVAPLTLLGGPLIMRAAWYTAGIVGGLSTVAMCAPSEKFLNMGGPLAVGFGVVFASSLGSMFLPPSSAFGAGLYSVAVYGGLILFSMFLLYDTQK 301
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: A0A553N1X5_9TELE (Uncharacterized protein n=2 Tax=Danionella translucida TaxID=623744 RepID=A0A553N1X5_9TELE)

HSP 1 Score: 117 bits (294), Expect = 1.180e-29
Identity = 60/114 (52.63%), Postives = 81/114 (71.05%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPLL----YNVAVYGGAGIFSFFVLYDTQK 330
            ++ + KH+AWA   G+MGA + P+  +GGPLV++AA  T AIV  LS V   AP++ FL  GGP A+G G+VFA+S+G M+FPAS  L    Y+V+VYGG  +FS F+LYDTQK
Sbjct:  183 ESTVQKHLAWALHSGVMGAVIAPLTLLGGPLVIRAAWYTAAIVGGLSTVAVCAPSEKFLNMGGPLAVGLGLVFASSMGSMFFPASSALGGGLYSVSVYGGLLLFSLFLLYDTQK 296
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: A0A671NDA7_9TELE (Growth hormone-inducible transmembrane protein-like n=5 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A671NDA7_9TELE)

HSP 1 Score: 117 bits (293), Expect = 1.230e-29
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
             + +PKH+AWA   G+MGA + P+  +GGPL+++AA  T  IV  LS V   AP++ FL+ GGP A+GFGVVFA+SLG M+ P +      LY+VAVYGG  +FS F+LYDTQK
Sbjct:  165 HSPMPKHLAWALHAGVMGAVIAPLTLLGGPLMVRAAWYTAGIVGGLSTVAMCAPSEKFLSLGGPLAVGFGVVFASSLGSMFLPPTSAFGAGLYSVAVYGGLVLFSMFLLYDTQK 278
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: A0A3P8WRE3_CYNSE (Growth hormone inducible transmembrane protein n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WRE3_CYNSE)

HSP 1 Score: 117 bits (294), Expect = 1.290e-29
Identity = 58/114 (50.88%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
             + +PKH+AW  + G+MGA + P+  +GGPL+L+AA  T  IV  LS V   AP++ FL  GGP AIGFGVVFA+S+G M+ PA+      LY++++YGG  +FS F+LYDTQK
Sbjct:  188 HSPMPKHLAWMLYAGVMGAVIAPLTLLGGPLMLRAAWNTAGIVGGLSAVAMCAPSEKFLNMGGPLAIGFGVVFASSIGSMFLPATSAFGAGLYSLSIYGGLALFSLFILYDTQK 301
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: A0A8C1LI32_CYPCA (Growth hormone inducible transmembrane protein n=5 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1LI32_CYPCA)

HSP 1 Score: 117 bits (293), Expect = 1.300e-29
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
             + +PKH+AWA   G+MGA + P+  +GGPL+++AA  T  IV  LS V   AP++ FL+ GGP A+GFGVVFA+SLG M+ P +      LY+VAVYGG  +FS F+LYDTQK
Sbjct:  168 HSPMPKHLAWALHAGVMGAVIAPLTLLGGPLMVRAAWYTAGIVGGLSTVAMCAPSEKFLSMGGPLAVGFGVVFASSLGSMFLPPTSAFGAGLYSVAVYGGLVLFSLFLLYDTQK 281
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: Q1KMD0_SPAAU (Growth hormone-inducible transmembrane protein (Fragment) n=1 Tax=Sparus aurata TaxID=8175 RepID=Q1KMD0_SPAAU)

HSP 1 Score: 114 bits (285), Expect = 1.640e-29
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
             + +PKH+AW    G+MGA + P+  +GGPL+++AA  T  IV  LS V   AP++ FL  GGP A+GFGVVFA+S+G M+ P +      LY+VA+YGG  +FS F+LYDTQK
Sbjct:   61 HSPVPKHLAWMFHAGVMGAVIAPLTLLGGPLMMRAAWYTAGIVGGLSTVAMCAPSEKFLNMGGPLAVGFGVVFASSIGSMFLPPTSAFGAGLYSVAIYGGLVLFSMFLLYDTQK 174
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: A0A6P6L0J7_CARAU (growth hormone-inducible transmembrane protein-like n=18 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6L0J7_CARAU)

HSP 1 Score: 117 bits (293), Expect = 1.660e-29
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
             + +PKH+AWA   G+MGA + P+  +GGPL+++AA  T  IV  LS V   AP++ FL+ GGP A+GFGVVFA+SLG M+ P +      LY+VAVYGG  +FS F+LYDTQK
Sbjct:  182 HSPMPKHLAWALHAGVMGAVIAPLTLLGGPLMVRAAWYTAGIVGGLSTVAMCAPSEKFLSMGGPLAVGFGVVFASSLGSMFLPPTSAFGAGLYSVAVYGGLVLFSLFLLYDTQK 295
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: H2TXC8_TAKRU (Uncharacterized protein n=4 Tax=Tetraodontidae TaxID=31031 RepID=H2TXC8_TAKRU)

HSP 1 Score: 117 bits (293), Expect = 1.780e-29
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
             + +PKH+AW    G+MGA + P+  +GGPL+L+AA  T  IV  LS V   AP++ FL+ GGP A+GFGVVFA+SLG M+ P +      LY+VAVYGG  +FS F+LYDTQK
Sbjct:  186 NSPVPKHLAWMFHAGVMGAVIAPLTLLGGPLMLRAAWYTAGIVGGLSTVAMCAPSEKFLSMGGPLAVGFGVVFASSLGSMFLPPTSAFGAGLYSVAVYGGLVLFSMFLLYDTQK 299
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: A0A7S4N319_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4N319_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 2.000e-29
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPLLYNVAVYGGAGIFSFFVLYDTQK 330
            +N IPKH+        M ASL  + F GGPLVLKAAA TGA+V +LSL GAAAP+++++   GP +IG GVVF AS+G+++FP S LL NVA+YGGA +F  FV YDT K
Sbjct:  203 ENTIPKHLGLLGLNASMAASLSGLGFFGGPLVLKAAALTGAVVGSLSLAGAAAPSESWMTLHGPLSIGLGVVFGASIGQLFFP-STLLMNVAMYGGAAVFGGFVFYDTAK 311
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BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Match: A0A3N0XP88_ANAGA (Growth hormone-inducible transmembrane protein n=4 Tax=Cypriniformes TaxID=7952 RepID=A0A3N0XP88_ANAGA)

HSP 1 Score: 117 bits (294), Expect = 2.110e-29
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVGAAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPL----LYNVAVYGGAGIFSFFVLYDTQK 330
             + +PKH+AWA   G+MGA + P+  +GGPL+++AA  T  IV  LS V   AP++ FL+ GGP A+GFGVVFA+SLG M+ P +      LY+VAVYGG  +FS F+LYDTQK
Sbjct:  218 NSPMPKHLAWALHAGVMGAVIAPLTLLGGPLMIRAAWYTAGIVGGLSTVAMCAPSEKFLSMGGPLAVGFGVVFASSLGSMFLPPTSAFGAGLYSVAVYGGLVLFSMFLLYDTQK 331
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115617.3234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W5ME99_LEPOC1.230e-3053.51Growth hormone inducible transmembrane protein n=3... [more]
A0A553N1X5_9TELE1.180e-2952.63Uncharacterized protein n=2 Tax=Danionella translu... [more]
A0A671NDA7_9TELE1.230e-2952.63Growth hormone-inducible transmembrane protein-lik... [more]
A0A3P8WRE3_CYNSE1.290e-2950.88Growth hormone inducible transmembrane protein n=1... [more]
A0A8C1LI32_CYPCA1.300e-2952.63Growth hormone inducible transmembrane protein n=5... [more]
Q1KMD0_SPAAU1.640e-2950.00Growth hormone-inducible transmembrane protein (Fr... [more]
A0A6P6L0J7_CARAU1.660e-2952.63growth hormone-inducible transmembrane protein-lik... [more]
H2TXC8_TAKRU1.780e-2952.63Uncharacterized protein n=4 Tax=Tetraodontidae Tax... [more]
A0A7S4N319_9EUKA2.000e-2956.36Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A3N0XP88_ANAGA2.110e-2952.63Growth hormone-inducible transmembrane protein n=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115617contigM-pyrifera_M_contig115617:126..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score120.2
Seed ortholog evalue6.2e-25
Seed eggNOG ortholog7918.ENSLOCP00000006708
Preferred nameGHITM
KEGG koko:K21890
KEGG TC1.A.14.1.5
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Growth hormone inducible transmembrane protein
EggNOG OGs38EBK@33154,3B9YH@33208,3CVN6@33213,485NE@7711,493QW@7742,49XED@7898,KOG1630@1,KOG1630@2759
COG Functional cat.T
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.912265-CDS-M-pyrifera_M_contig115617:125..2521622815671.912265-CDS-M-pyrifera_M_contig115617:125..252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115617 126..252 +
1692277514.7131321-CDS-M-pyrifera_M_contig115617:125..2521692277514.7131321-CDS-M-pyrifera_M_contig115617:125..252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115617 126..252 +
1622815671.9253545-CDS-M-pyrifera_M_contig115617:360..5631622815671.9253545-CDS-M-pyrifera_M_contig115617:360..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115617 361..563 +
1692277514.7271724-CDS-M-pyrifera_M_contig115617:360..5631692277514.7271724-CDS-M-pyrifera_M_contig115617:360..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115617 361..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115617.3234.1prot_M-pyrifera_M_contig115617.3234.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115617 126..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115617.3234.1

>prot_M-pyrifera_M_contig115617.3234.1 ID=prot_M-pyrifera_M_contig115617.3234.1|Name=mRNA_M-pyrifera_M_contig115617.3234.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
QNAIPKHIAWASFCGIMGASLCPVAFMGGPLVLKAAAATGAIVSTLSLVG
AAAPTDAFLAYGGPAAIGFGVVFAASLGRMWFPASPLLYNVAVYGGAGIF
SFFVLYDTQK
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mRNA from alignment at M-pyrifera_M_contig115617:126..563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115617.3234.1 ID=mRNA_M-pyrifera_M_contig115617.3234.1|Name=mRNA_M-pyrifera_M_contig115617.3234.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig115617:126..563+ (Macrocystis pyrifera P11B4 male)
CAGAATGCCATCCCTAAGCACATTGCGTGGGCGTCCTTCTGCGGCATCAT
GGGTGCCAGCCTTTGTCCTGTCGCCTTCATGGGCGGCCCTCTCGTCCTTA
AGGCTGCCGCCGCCACCGGCGCTATCGGTACGTCTTCTACCGCCTTCCCT
TCTAGCACCAGATCATCCCCTCTTTACTTCTTGTTCTACCTGTCTGGCCT
GCTCTTGCTGTGCCCTGTGCTGACCAGTGCTGCAGTGAGCACACTCTCTC
TGGTCGGAGCCGCCGCTCCCACGGACGCCTTCCTCGCCTATGGCGGCCCT
GCAGCCATTGGCTTCGGAGTTGTGTTTGCCGCCAGCCTGGGCCGCATGTG
GTTCCCTGCATCGCCCCTCCTCTACAACGTGGCGGTCTACGGAGGCGCTG
GCATCTTCAGCTTCTTCGTCCTCTACGACACGCAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115617:126..563+

>mRNA_M-pyrifera_M_contig115617.3234.1 ID=mRNA_M-pyrifera_M_contig115617.3234.1|Name=mRNA_M-pyrifera_M_contig115617.3234.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig115617:126..563+ (Macrocystis pyrifera P11B4 male)
CAGAATGCCATCCCTAAGCACATTGCGTGGGCGTCCTTCTGCGGCATCAT
GGGTGCCAGCCTTTGTCCTGTCGCCTTCATGGGCGGCCCTCTCGTCCTTA
AGGCTGCCGCCGCCACCGGCGCTATCGCAGAATGCCATCCCTAAGCACAT
TGCGTGGGCGTCCTTCTGCGGCATCATGGGTGCCAGCCTTTGTCCTGTCG
CCTTCATGGGCGGCCCTCTCGTCCTTAAGGCTGCCGCCGCCACCGGCGCT
ATCGTGAGCACACTCTCTCTGGTCGGAGCCGCCGCTCCCACGGACGCCTT
CCTCGCCTATGGCGGCCCTGCAGCCATTGGCTTCGGAGTTGTGTTTGCCG
CCAGCCTGGGCCGCATGTGGTTCCCTGCATCGCCCCTCCTCTACAACGTG
GCGGTCTACGGAGGCGCTGGCATCTTCAGCTTCTTCGTCCTCTACGACAC
GCAGAAGTGAGCACACTCTCTCTGGTCGGAGCCGCCGCTCCCACGGACGC
CTTCCTCGCCTATGGCGGCCCTGCAGCCATTGGCTTCGGAGTTGTGTTTG
CCGCCAGCCTGGGCCGCATGTGGTTCCCTGCATCGCCCCTCCTCTACAAC
GTGGCGGTCTACGGAGGCGCTGGCATCTTCAGCTTCTTCGTCCTCTACGA
CACGCAGAAG
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