mRNA_M-pyrifera_M_contig115616.3233.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115616.3233.1
Unique NamemRNA_M-pyrifera_M_contig115616.3233.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A162UXR4_PHYB8 (MFS domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162UXR4_PHYB8)

HSP 1 Score: 118 bits (295), Expect = 2.250e-28
Identity = 60/145 (41.38%), Postives = 97/145 (66.90%), Query Frame = 1
Query:    1 FSEGLSASILNPFCGLMVQEEFGIASADVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKT---QAKMYSLRSSMRGTGFLVGPIIGGFL 426
            F+E +  ++L PF   MV++      A+VGY+VG +T+SF L Q ++  P GM +D+IGRRPV+L G++G ++++ +FGLSK   WA+L R L G+ NGN  V+K+ + +++  +    +A+ +SL   M G G ++GPI+GGFL
Sbjct:   20 FAEPICFTVLFPFIVPMVRDFNITDEANVGYYVGFITSSFALAQFLTGMPWGMLSDRIGRRPVILTGMVGTVISILLFGLSKSYIWALLARSLCGLLNGNIGVLKSMVAELTAGQPADKRARAFSLLPLMYGLGSIIGPILGGFL 164          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A7S3D7Y4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D7Y4_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 5.430e-28
Identity = 62/141 (43.97%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    4 SEGLSASILNPFCGLMVQEEFGIASADVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGGFL 426
            +E    ++L  F   MV E+FG+ S+++G +VG LTASFFL QL++SF     +D+ GRRP +++G +G+   + +FG SK  W A+L+R + G  NGN AV KTY+ ++ST KTQA+ +S+ +     G LV P IGG L
Sbjct:  111 NEAFGLNVLWSFVAFMV-EDFGVPSSELGSFVGPLTASFFLAQLVASFFWAAVSDRYGRRPAIVIGCIGSGAAMILFGFSKQYWQAVLFRCMCGGLNGNIAVTKTYLGEVSTAKTQARGFSVLALSWAMGSLVAPSIGGLL 250          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A7R9UQ60_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UQ60_DIALT)

HSP 1 Score: 111 bits (278), Expect = 6.470e-28
Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    4 SEGLSASILNPFCGLMVQEEFGIASADVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGGFL 426
            SEG+ A  L PF   MV E+FG+  +DVG++ GLL +++   Q +S    G  +D  GRRPVL++G+      + +FGLS  +  A+LWRFLGG+ NGN  V +  +RD++ +  + + ++L  +  G GF++GP +GG L
Sbjct:   57 SEGIIACSLFPFLPFMV-EDFGLRLSDVGFFAGLLGSAYNFSQFLSGVHWGRLSDVWGRRPVLIIGVSTQAAAMVLFGLSSSLRQALLWRFLGGLLNGNTGVGRAVMRDLTDESNRTRGFALLGTAYGMGFVLGPALGGML 196          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: D2VS29_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VS29_NAEGR)

HSP 1 Score: 116 bits (291), Expect = 1.110e-27
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    7 EGLSASILNPFCGLMVQEEFGIAS--ADVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGG 420
            + LS + L P+   M+  +F +     + GY+VGLL AS+F+ Q ISSF  G  +D +GRRPVLL G     V + MFG SKW+WWA + RF  G+ NGN  VVK+Y+ +I+    QA+ +S  S       ++GP++GG
Sbjct:   84 DSLSVTSLFPYVTFMIA-DFNLTDNPREYGYYVGLLAASYFISQFISSFLWGTISDNLGRRPVLLFGTFFGAVCVLMFGFSKWLWWACICRFFYGLLNGNLGVVKSYLGEITDSTNQARAFSFTSITFSLASVIGPLLGG 222          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A367KXC0_RHIST (MFS domain-containing protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KXC0_RHIST)

HSP 1 Score: 115 bits (288), Expect = 2.100e-27
Identity = 58/145 (40.00%), Postives = 95/145 (65.52%), Query Frame = 1
Query:    1 FSEGLSASILNPFCGLMVQEEFGIASADVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKT---QAKMYSLRSSMRGTGFLVGPIIGGFL 426
            F+E +  +++ PF   MV++       +VGY+VG +T+ F L QL++    GM +D+IGRRP++L G+LG I ++ +FGLSK   WA++ R L G+ NGN  V+K+ + +++TD     +A+ +SL   M G G ++GP++GGFL
Sbjct:   22 FAEPICFTVIFPFIVQMVRDFHITDEKNVGYYVGFITSCFALSQLLTGIHWGMLSDRIGRRPIILQGLLGTITSILLFGLSKSFIWALVSRSLCGLLNGNIGVLKSMVSELTTDHLPHQRARAFSLLPLMYGLGSIIGPMLGGFL 166          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A1C7N707_9FUNG (MFS domain-containing protein n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N707_9FUNG)

HSP 1 Score: 114 bits (286), Expect = 3.900e-27
Identity = 59/145 (40.69%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 FSEGLSASILNPFCGLMVQEEFGIASADVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKT---QAKMYSLRSSMRGTGFLVGPIIGGFL 426
            F+E +  +++ PF   MV++        VGY+VGL+T+ F L QL++    GM +D+IGRRPV+L G++G I ++ +FGLSK   WA+L R L G+ NGN  V+K+ + +++ D     +A+ +SL   M G G ++GP++GGFL
Sbjct:   22 FAEPICFTVIFPFVVQMVRDFHVTDEKSVGYYVGLITSCFALSQLLTGIHWGMLSDRIGRRPVILQGLVGTITSILLFGLSKSFVWALLSRSLCGLLNGNIGVLKSMVSELTIDHQPHQRAQAFSLLPLMYGLGSIIGPMLGGFL 166          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A1Y1YTN5_9FUNG (MFS general substrate transporter n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YTN5_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 4.300e-27
Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    4 SEGLSASILNPFCGLMVQEEFGIASAD--VGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGGFL 426
            +E +  +++ PF   MV+ +FGIA  +  +G++VGLL A F + ++IS    G+ +DKIGRRPV+LMG++G+ +  +MFGLSK   WA+  R + G+ NGN  VVK+ I +++    QAK +SL S M G G ++GP I G L
Sbjct:   24 AEPVVLTVIFPFMYYMVR-DFGIAKEEKEIGFYVGLLAAVFSIAEMISGLFWGVVSDKIGRRPVILMGLIGSFLGCTMFGLSKSYGWAIFARCVSGLLNGNVGVVKSVIGELTDRTNQAKGFSLVSLMWGAGIVIGPTIAGLL 165          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A6B2L4N8_9EUKA (MFS domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4N8_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 7.260e-27
Identity = 59/143 (41.26%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    4 SEGLSASILNPFCGLMVQEEFGIASA--DVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGGFL 426
            SE  S +++ PF   MV  +FG+     +VG++ G + + F + Q  SSF  G  +DK+GR+PVL++G+ GN + + +FG SK +W+A+L R L G  NGN  VVKTY+ +I+ +    K +S+     GTG ++GP IGGFL
Sbjct:   15 SESFSITMIFPFLANMVL-DFGLTDNLDEVGFYAGWIASCFNIAQFSSSFGWGWLSDKVGRKPVLIVGLAGNFLMIILFGFSKDLWYAILARSLNGFLNGNIGVVKTYLSEITDNTNAHKGFSIFGLCWGTGLIIGPSIGGFL 156          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: B0EJS1_ENTDS (MFS domain-containing protein (Fragment) n=2 Tax=Entamoeba dispar (strain ATCC PRA-260 / SAW760) TaxID=370354 RepID=B0EJS1_ENTDS)

HSP 1 Score: 114 bits (284), Expect = 7.900e-27
Identity = 54/142 (38.03%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    7 EGLSASILNPFCGLMVQEEFGIASA--DVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGGFL 426
            E  + + +  + G MV  +FG+  +    GY+ GLL A +F  Q +SSF +G+ +D IGRRP+LL+G +G+I++ ++FG S   WWA++ R + G+ NGN  V+KT++ + ST + +A+++ L     G G ++G  IGG+L
Sbjct:   35 EAFTKNSIAAYAGFMVT-DFGVVDSPNQAGYYSGLLNACYFFSQFLSSFFLGVLSDNIGRRPILLIGSIGSIISTTLFGFSFNYWWAIISRSINGLVNGNIGVIKTFMGEFSTKENRAQVFGLLGLTGGFGMIIGASIGGYL 175          
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Match: A0A507ENX5_9FUNG (MFS domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ENX5_9FUNG)

HSP 1 Score: 114 bits (284), Expect = 8.170e-27
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    7 EGLSASILNPFCGLMVQEEFGIA--SADVGYWVGLLTASFFLGQLISSFPIGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGNNAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGGFL 426
            E    +IL PF   MV E FG+A  S  +GY+VG +TA+F   Q IS+ P G  +D+IGRRPVLL+G+ GN   + +FGLSK + WA+  R +GG+ NGN  V K+ + +++ +  + + +SL     G G + GP++GG L
Sbjct:   68 EPFQFTILFPFIVFMV-ESFGVAPDSESLGYYVGFITAAFAGAQCISALPWGTLSDRIGRRPVLLLGLAGNACAIVLFGLSKSLKWAVAARTIGGLLNGNIGVAKSMLGEVTDNSNRGRAFSLLGLSMGIGSICGPMVGGLL 208          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115616.3233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A162UXR4_PHYB82.250e-2841.38MFS domain-containing protein n=1 Tax=Phycomyces b... [more]
A0A7S3D7Y4_9EUKA5.430e-2843.97Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7R9UQ60_DIALT6.470e-2839.72Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
D2VS29_NAEGR1.110e-2742.14Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A367KXC0_RHIST2.100e-2740.00MFS domain-containing protein n=1 Tax=Rhizopus sto... [more]
A0A1C7N707_9FUNG3.900e-2740.69MFS domain-containing protein n=1 Tax=Choanephora ... [more]
A0A1Y1YTN5_9FUNG4.300e-2743.36MFS general substrate transporter n=1 Tax=Basidiob... [more]
A0A6B2L4N8_9EUKA7.260e-2741.26MFS domain-containing protein n=1 Tax=Arcella inte... [more]
B0EJS1_ENTDS7.900e-2738.03MFS domain-containing protein (Fragment) n=2 Tax=E... [more]
A0A507ENX5_9FUNG8.170e-2742.25MFS domain-containing protein n=1 Tax=Spizellomyce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115616contigM-pyrifera_M_contig115616:140..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog529818.AMSG_12007T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.8705587-CDS-M-pyrifera_M_contig115616:139..5651622815671.8705587-CDS-M-pyrifera_M_contig115616:139..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115616 140..565 +
1692277514.6856713-CDS-M-pyrifera_M_contig115616:139..5651692277514.6856713-CDS-M-pyrifera_M_contig115616:139..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115616 140..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115616.3233.1prot_M-pyrifera_M_contig115616.3233.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115616 140..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115616.3233.1

>prot_M-pyrifera_M_contig115616.3233.1 ID=prot_M-pyrifera_M_contig115616.3233.1|Name=mRNA_M-pyrifera_M_contig115616.3233.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
FSEGLSASILNPFCGLMVQEEFGIASADVGYWVGLLTASFFLGQLISSFP
IGMAADKIGRRPVLLMGILGNIVTLSMFGLSKWMWWAMLWRFLGGVTNGN
NAVVKTYIRDISTDKTQAKMYSLRSSMRGTGFLVGPIIGGFL
back to top

mRNA from alignment at M-pyrifera_M_contig115616:140..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115616.3233.1 ID=mRNA_M-pyrifera_M_contig115616.3233.1|Name=mRNA_M-pyrifera_M_contig115616.3233.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig115616:140..565+ (Macrocystis pyrifera P11B4 male)
TTTTCTGAAGGCCTGAGCGCATCCATCCTCAACCCTTTTTGCGGTCTTAT GGTCCAGGAGGAGTTCGGCATCGCCAGTGCAGACGTGGGCTACTGGGTGG GCCTCCTGACGGCCAGTTTCTTCCTGGGCCAGCTCATCTCCAGCTTTCCC ATCGGAATGGCGGCAGACAAAATTGGAAGGAGGCCTGTGCTGCTGATGGG CATTCTTGGAAACATTGTGACGCTGTCGATGTTTGGCCTGAGCAAGTGGA TGTGGTGGGCAATGCTGTGGAGATTCCTTGGAGGGGTGACGAACGGCAAC AACGCGGTGGTGAAGACGTACATCAGGGACATCAGCACAGACAAGACGCA GGCGAAGATGTACAGCCTGCGCTCTTCGATGCGGGGCACTGGATTCTTGG TGGGCCCCATCATTGGCGGCTTTCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115616:140..565+

>mRNA_M-pyrifera_M_contig115616.3233.1 ID=mRNA_M-pyrifera_M_contig115616.3233.1|Name=mRNA_M-pyrifera_M_contig115616.3233.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig115616:140..565+ (Macrocystis pyrifera P11B4 male)
TTTTCTGAAGGCCTGAGCGCATCCATCCTCAACCCTTTTTGCGGTCTTAT
GGTCCAGGAGGAGTTCGGCATCGCCAGTGCAGACGTGGGCTACTGGGTGG
GCCTCCTGACGGCCAGTTTCTTCCTGGGCCAGCTCATCTCCAGCTTTCCC
ATCGGAATGGCGGCAGACAAAATTGGAAGGAGGCCTGTGCTGCTGATGGG
CATTCTTGGAAACATTGTGACGCTGTCGATGTTTGGCCTGAGCAAGTGGA
TGTGGTGGGCAATGCTGTGGAGATTCCTTGGAGGGGTGACGAACGGCAAC
AACGCGGTGGTGAAGACGTACATCAGGGACATCAGCACAGACAAGACGCA
GGCGAAGATGTACAGCCTGCGCTCTTCGATGCGGGGCACTGGATTCTTGG
TGGGCCCCATCATTGGCGGCTTTCTCTTTTCTGAAGGCCTGAGCGCATCC
ATCCTCAACCCTTTTTGCGGTCTTATGGTCCAGGAGGAGTTCGGCATCGC
CAGTGCAGACGTGGGCTACTGGGTGGGCCTCCTGACGGCCAGTTTCTTCC
TGGGCCAGCTCATCTCCAGCTTTCCCATCGGAATGGCGGCAGACAAAATT
GGAAGGAGGCCTGTGCTGCTGATGGGCATTCTTGGAAACATTGTGACGCT
GTCGATGTTTGGCCTGAGCAAGTGGATGTGGTGGGCAATGCTGTGGAGAT
TCCTTGGAGGGGTGACGAACGGCAACAACGCGGTGGTGAAGACGTACATC
AGGGACATCAGCACAGACAAGACGCAGGCGAAGATGTACAGCCTGCGCTC
TTCGATGCGGGGCACTGGATTCTTGGTGGGCCCCATCATTGGCGGCTTTC
TC
back to top