mRNA_M-pyrifera_M_contig115615.3232.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115615.3232.1
Unique NamemRNA_M-pyrifera_M_contig115615.3232.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115615.3232.1 vs. uniprot
Match: A0A0G4FGE1_9ALVE (EF-hand domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FGE1_9ALVE)

HSP 1 Score: 53.5 bits (127), Expect = 2.180e-5
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:  133 LVSVRVSRNPLGPLGVTALMEFLKDKAALRNVFIDSTDARDEGALAVAEAIGARK--NFKTVSMADNGISEEGFAALLKVAQENIFVTDLRL 402
            L+SV +S NPLGP GV AL + L   A L+++ +  TDAR EGA A+AE + A+K  + +T+ +A+N +   GF  L     E   V  LR+
Sbjct:  324 LLSVDLSDNPLGPFGVRALAKGLC--APLQSLRLGRTDARKEGAEALAEVLKAKKVSSLQTLDLAENEMWAGGFKPLAAALSELGAVPSLRV 413
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BLAST of mRNA_M-pyrifera_M_contig115615.3232.1 vs. uniprot
Match: UPI00190BC514 (hypothetical protein n=1 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI00190BC514)

HSP 1 Score: 52.0 bits (123), Expect = 7.420e-5
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   10 LCAFCDVLRGDTAMTELSLVDVG-LTEEAVDLLGPALADNTGLVSVRVSRNPLGPLGVTALMEFLK 204
            +C   D LR +T +T+L L D   L E+   +LG ALA NTG+V + +SR   GP G + L++ L+
Sbjct:  177 ICLIADALRSNTTVTKLVLYDCNTLNEDVAKMLGEALAKNTGIVGLELSRCDFGPRGWSFLLDALE 242
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115615.3232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G4FGE1_9ALVE2.180e-541.30EF-hand domain-containing protein n=1 Tax=Chromera... [more]
UPI00190BC5147.420e-540.91hypothetical protein n=1 Tax=Noviherbaspirillum pe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115615contigM-pyrifera_M_contig115615:34..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.827844-CDS-M-pyrifera_M_contig115615:33..4981622815671.827844-CDS-M-pyrifera_M_contig115615:33..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115615 34..498 +
1692277514.6721585-CDS-M-pyrifera_M_contig115615:33..4981692277514.6721585-CDS-M-pyrifera_M_contig115615:33..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115615 34..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115615.3232.1prot_M-pyrifera_M_contig115615.3232.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115615 34..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115615.3232.1

>prot_M-pyrifera_M_contig115615.3232.1 ID=prot_M-pyrifera_M_contig115615.3232.1|Name=mRNA_M-pyrifera_M_contig115615.3232.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
PDVLCAFCDVLRGDTAMTELSLVDVGLTEEAVDLLGPALADNTGLVSVRV
SRNPLGPLGVTALMEFLKDKAALRNVFIDSTDARDEGALAVAEAIGARKN
FKTVSMADNGISEEGFAALLKVAQENIFVTDLRLGDNHGIDNERTKQIGN
VFKRN
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mRNA from alignment at M-pyrifera_M_contig115615:34..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115615.3232.1 ID=mRNA_M-pyrifera_M_contig115615.3232.1|Name=mRNA_M-pyrifera_M_contig115615.3232.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig115615:34..498+ (Macrocystis pyrifera P11B4 male)
CCCGACGTGCTGTGCGCCTTTTGCGACGTGCTGCGCGGCGACACGGCCAT
GACGGAGCTGAGCCTCGTCGACGTCGGCCTCACCGAGGAGGCGGTCGACC
TCCTGGGCCCGGCGCTGGCCGACAACACTGGCCTCGTCAGCGTGCGCGTG
TCGCGCAATCCCCTGGGGCCCCTGGGCGTGACTGCGCTGATGGAGTTCCT
CAAGGACAAGGCTGCGCTGCGCAACGTCTTCATCGACTCGACCGACGCGC
GCGACGAGGGCGCTCTGGCGGTGGCAGAGGCGATTGGCGCACGCAAGAAC
TTCAAGACCGTCAGCATGGCCGACAACGGCATCTCGGAGGAGGGCTTCGC
GGCGCTGCTCAAGGTCGCGCAGGAGAACATCTTCGTCACCGACCTGCGCC
TCGGCGACAACCACGGCATCGACAACGAGCGCACCAAGCAGATCGGCAAC
GTGTTCAAGCGCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115615:34..498+

>mRNA_M-pyrifera_M_contig115615.3232.1 ID=mRNA_M-pyrifera_M_contig115615.3232.1|Name=mRNA_M-pyrifera_M_contig115615.3232.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig115615:34..498+ (Macrocystis pyrifera P11B4 male)
CCCGACGTGCTGTGCGCCTTTTGCGACGTGCTGCGCGGCGACACGGCCAT
GACGGAGCTGAGCCTCGTCGACGTCGGCCTCACCGAGGAGGCGGTCGACC
TCCTGGGCCCGGCGCTGGCCGACAACACTGGCCTCGTCAGCGTGCGCGTG
TCGCGCAATCCCCTGGGGCCCCTGGGCGTGACTGCGCTGATGGAGTTCCT
CAAGGACAAGGCTGCGCTGCGCAACGTCTTCATCGACTCGACCGACGCGC
GCGACGAGGGCGCTCTGGCGGTGGCAGAGGCGATTGGCGCACGCAAGAAC
TTCAAGACCGTCAGCATGGCCGACAACGGCATCTCGGAGGAGGGCTTCGC
GGCGCTGCTCAAGGTCGCGCAGGAGAACATCTTCGTCACCGACCTGCGCC
TCGGCGACAACCACGGCATCGACAACGAGCGCACCAAGCAGATCGGCAAC
GTGTTCAAGCGCAACCCCGACGTGCTGTGCGCCTTTTGCGACGTGCTGCG
CGGCGACACGGCCATGACGGAGCTGAGCCTCGTCGACGTCGGCCTCACCG
AGGAGGCGGTCGACCTCCTGGGCCCGGCGCTGGCCGACAACACTGGCCTC
GTCAGCGTGCGCGTGTCGCGCAATCCCCTGGGGCCCCTGGGCGTGACTGC
GCTGATGGAGTTCCTCAAGGACAAGGCTGCGCTGCGCAACGTCTTCATCG
ACTCGACCGACGCGCGCGACGAGGGCGCTCTGGCGGTGGCAGAGGCGATT
GGCGCACGCAAGAACTTCAAGACCGTCAGCATGGCCGACAACGGCATCTC
GGAGGAGGGCTTCGCGGCGCTGCTCAAGGTCGCGCAGGAGAACATCTTCG
TCACCGACCTGCGCCTCGGCGACAACCACGGCATCGACAACGAGCGCACC
AAGCAGATCGGCAACGTGTTCAAGCGCAAC
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