mRNA_M-pyrifera_M_contig11558.3225.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11558.3225.1
Unique NamemRNA_M-pyrifera_M_contig11558.3225.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: D8LEE8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE8_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.680e-90
Identity = 147/172 (85.47%), Postives = 154/172 (89.53%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDDSDDE 516
            +R+NRVLVFALYKREAARLEQFLQRNN+DAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVE+VINYSFPLTI D                SHTYFHQGDKARAGELVNVLQDANQ+VPEALTKFGTHVKKKEHKLYGAFAKDVDMD+K+TK TFDDSDDE
Sbjct:  413 SRKNRVLVFALYKREAARLEQFLQRNNFDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTYFHQGDKARAGELVNVLQDANQSVPEALTKFGTHVKKKEHKLYGAFAKDVDMDRKATKTTFDDSDDE 584          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A7S2V5P3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P3_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.190e-64
Identity = 115/170 (67.65%), Postives = 128/170 (75.29%), Query Frame = 1
Query:   10 NRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITF-DDSDDE 516
            NRVLVFALYK+EAARLE  +QR  +   A+HGDK Q DRE AL  F++   PL+VATDVAARGLDIPDVE+VINYSFPLTI D                +HT+FH GDKARAGEL NVL+ A   VPE L KFGTHVKKKEHKLYGAF+KDVDM KKSTKITF DDSDD+
Sbjct:  273 NRVLVFALYKKEAARLEAMIQRAGWKVGAIHGDKSQRDREAALADFRACRVPLLVATDVAARGLDIPDVEYVINYSFPLTIEDYVHRIGRTGRAGQKGVAHTFFHAGDKARAGELQNVLRKAGVEVPEELLKFGTHVKKKEHKLYGAFSKDVDMSKKSTKITFSDDSDDD 442          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A024UC09_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces TaxID=100860 RepID=A0A024UC09_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.980e-64
Identity = 110/168 (65.48%), Postives = 128/168 (76.19%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDD 504
            +R+NRVLVF LYK+EA R+EQ LQR  +   A+HGDKGQ  R  AL  FKS + PL++ATDVAARGLDIPDVEFV+NYSFPLTI D                SHT+F   DK +AGELVN+L+++N TVPE LTKFGTHVKKKEHKLYGAFAKD+DM KK+TKITFDD
Sbjct:  373 SRKNRVLVFVLYKKEAVRVEQMLQRKGWSCTAIHGDKGQQQRMEALDAFKSGQIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGISHTFFTNFDKPKAGELVNLLRESNATVPEELTKFGTHVKKKEHKLYGAFAKDIDMTKKATKITFDD 540          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A067CYW6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CYW6_SAPPC)

HSP 1 Score: 214 bits (545), Expect = 4.370e-64
Identity = 112/172 (65.12%), Postives = 130/172 (75.58%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDDSDDE 516
            +R+NRVLVF LYK+EA R+E  LQR  +   A+HGDKGQA R  AL  FKS   PL++ATDVAARGLDIPDVEFV+NYSFPLTI D                SHT+F   DK +AGELVN+L+++N  VPE LTKFGTHVKKKEHKLYGAFAK+VDM+KK+TKITF DSDDE
Sbjct:  358 SRKNRVLVFVLYKKEAVRVETMLQRKGWKCTAIHGDKGQAQRMEALEAFKSGSIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGISHTFFTNHDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKNVDMNKKATKITFGDSDDE 529          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: T0RX20_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0RX20_SAPDV)

HSP 1 Score: 214 bits (544), Expect = 7.600e-64
Identity = 112/172 (65.12%), Postives = 130/172 (75.58%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDDSDDE 516
            +R+NRVLVF LYK+EA R+E  LQR  +   A+HGDKGQA R  AL  FKS   PL++ATDVAARGLDIPDVEFV+NYSFPLTI D                SHT+F   DK +AGELVN+L+++N  VPE LTKFGTHVKKKEHKLYGAFAK+VDM+KK+TKITF DSDDE
Sbjct:  368 SRKNRVLVFVLYKKEAVRVETMLQRKGWKCTAIHGDKGQAQRMEALEAFKSGTIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGISHTFFTNHDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKNVDMNKKATKITFGDSDDE 539          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A485L977_9STRA (Aste57867_16705 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L977_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.210e-62
Identity = 108/168 (64.29%), Postives = 126/168 (75.00%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDD 504
            +R+NRVLVF LYK+EA R+E  LQR  +   A+HGDK Q DR  AL  FKS + PL++ATDVAARGLDIPDVEFV+NYSFPLTI D                SHT+F   DK +AGELVN+L+++N  VPE LTKFGTHVKKKEHKLYGAFAKD+DM KK+TKITFDD
Sbjct:  374 SRKNRVLVFVLYKKEAVRVESMLQRKGWACTAIHGDKNQHDRMEALEAFKSGKTPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGTSHTFFTNFDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKDIDMTKKATKITFDD 541          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A6G0WXV8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXV8_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.850e-62
Identity = 109/168 (64.88%), Postives = 126/168 (75.00%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDD 504
            +R+NRVLVF LYK+EA R+EQ LQR  +   A+HGDK Q  R  AL  FKS + PL++ATDVAARGLDIPDVEFV+NYSFPLTI D                SHT+F   DK +AGELVN+L+++N  VPE LTKFGTHVKKKEHKLYGAFAKDVDM KK+TKITFDD
Sbjct:  378 SRKNRVLVFVLYKKEAVRVEQMLQRKGWRCTAIHGDKSQEQRMEALEAFKSGKIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGTSHTFFTNFDKPKAGELVNLLRESNAPVPEELTKFGTHVKKKEHKLYGAFAKDVDMTKKATKITFDD 545          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A1V9YSH1_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YSH1_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.020e-62
Identity = 111/172 (64.53%), Postives = 129/172 (75.00%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDDSDDE 516
            +R+NRVLVF LYK+EA R+E  L R  +   A+HGDKGQ  R  AL  FK+ + PL++ATDVAARGLDIPDVEFV+NYSFPLTI D                SHT+F   DK +AGELVN+L+D+N  VPE LTKFGTHVKKKEHKLYGAFAKDVDM+KK+TKITFD SDDE
Sbjct:  363 SRKNRVLVFVLYKKEAVRVETMLNRKGWKCTAIHGDKGQQQRMEALEAFKTGKVPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHRIGRTGRGGKKGTSHTFFTNHDKPKAGELVNLLRDSNAPVPEELTKFGTHVKKKEHKLYGAFAKDVDMNKKATKITFD-SDDE 533          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A5D6YE84_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE84_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.200e-61
Identity = 106/170 (62.35%), Postives = 130/170 (76.47%), Query Frame = 1
Query:    1 TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDDSD 510
            +R NRVL+F LYK+EA R+E+ LQ+  +   A+HGD+ QA R  A+ QFKS + PL++ATDVAARGLDIPDVE+V+NYSFPLTI D                +HT+F   DK RAGELVN+L+D+NQ VP  LTKFGTHVKKKEHKLYGAFAK+VD++KK+TKITFDDSD
Sbjct:  402 SRRNRVLLFVLYKKEADRVERMLQQKGWTCAAIHGDRNQAQRTEAVEQFKSGKIPLLIATDVAARGLDIPDVEYVLNYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRDSNQEVPADLTKFGTHVKKKEHKLYGAFAKNVDVNKKATKITFDDSD 571          
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Match: A0A7S3XUU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU1_HETAK)

HSP 1 Score: 207 bits (527), Expect = 4.860e-61
Identity = 109/167 (65.27%), Postives = 124/167 (74.25%), Query Frame = 1
Query:   10 NRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGXXXXXXXXXXXXXGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGAFAKDVDMDKKSTKITFDDSD 510
            NRV+VF LYK+E +RLE  L+R  +   A+HGDKGQ  RE AL  F+ ++ P+++ATDVAARGLDIPDVE VINYSFPLTI D                SHT FH+GDKARAGELVNVL  A   VP AL KFGTHVKKKEHKLYGAFAKDVD+ KK+TKITFDDSD
Sbjct:  405 NRVIVFGLYKKECSRLEGDLRRAGWKVGAIHGDKGQGAREAALEDFRQQKVPILIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKSGVSHTLFHEGDKARAGELVNVLTKAGAEVPAALLKFGTHVKKKEHKLYGAFAKDVDLTKKATKITFDDSD 571          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11558.3225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE8_ECTSI1.680e-9085.47DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2V5P3_9STRA1.190e-6467.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024UC09_9STRA1.980e-6465.48Uncharacterized protein n=10 Tax=Aphanomyces TaxID... [more]
A0A067CYW6_SAPPC4.370e-6465.12Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0RX20_SAPDV7.600e-6465.12Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]
A0A485L977_9STRA1.210e-6264.29Aste57867_16705 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WXV8_9STRA1.850e-6264.88Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YSH1_9STRA2.020e-6264.53DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca c... [more]
A0A5D6YE84_9STRA1.200e-6162.35Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3XUU1_HETAK4.860e-6165.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11558contigM-pyrifera_M_contig11558:174..2101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue1.8e-74
Seed eggNOG ortholog2880.D8LEE8
Preferred nameDBP3
KEGG koko:K07466,ko:K14811
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000166,GO:0000460,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-00_002030.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03009,ko03032,ko03400
Exons4
Model size519
Cds size519
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11558.3225.1prot_M-pyrifera_M_contig11558.3225.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11558 174..2101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.3310819-CDS-M-pyrifera_M_contig11558:173..2901622815671.3310819-CDS-M-pyrifera_M_contig11558:173..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 174..290 +
1692277514.3693287-CDS-M-pyrifera_M_contig11558:173..2901692277514.3693287-CDS-M-pyrifera_M_contig11558:173..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 174..290 +
1622815671.343334-CDS-M-pyrifera_M_contig11558:586..7441622815671.343334-CDS-M-pyrifera_M_contig11558:586..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 587..744 +
1692277514.3800561-CDS-M-pyrifera_M_contig11558:586..7441692277514.3800561-CDS-M-pyrifera_M_contig11558:586..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 587..744 +
1622815671.3558333-CDS-M-pyrifera_M_contig11558:1392..14861622815671.3558333-CDS-M-pyrifera_M_contig11558:1392..1486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 1393..1486 +
1692277514.4017618-CDS-M-pyrifera_M_contig11558:1392..14861692277514.4017618-CDS-M-pyrifera_M_contig11558:1392..1486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 1393..1486 +
1622815671.3657713-CDS-M-pyrifera_M_contig11558:1951..21011622815671.3657713-CDS-M-pyrifera_M_contig11558:1951..2101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 1952..2101 +
1692277514.4166074-CDS-M-pyrifera_M_contig11558:1951..21011692277514.4166074-CDS-M-pyrifera_M_contig11558:1951..2101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11558 1952..2101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11558.3225.1

>prot_M-pyrifera_M_contig11558.3225.1 ID=prot_M-pyrifera_M_contig11558.3225.1|Name=mRNA_M-pyrifera_M_contig11558.3225.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
TRENRVLVFALYKREAARLEQFLQRNNYDAVAVHGDKGQADRERALGQFK
SKERPLMVATDVAARGLDIPDVEFVINYSFPLTIGDDGGGGGRAGGGGKK
GGSHTYFHQGDKARAGELVNVLQDANQTVPEALTKFGTHVKKKEHKLYGA
FAKDVDMDKKSTKITFDDSDDE*
back to top

mRNA from alignment at M-pyrifera_M_contig11558:174..2101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11558.3225.1 ID=mRNA_M-pyrifera_M_contig11558.3225.1|Name=mRNA_M-pyrifera_M_contig11558.3225.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1928bp|location=Sequence derived from alignment at M-pyrifera_M_contig11558:174..2101+ (Macrocystis pyrifera P11B4 male)
ACAAGGGAAAACCGAGTGTTGGTGTTCGCGCTGTACAAGCGCGAAGCGGC TCGTTTGGAGCAGTTCCTGCAGCGAAATAACTACGACGCCGTTGCGGTGC ACGGGGACAAGGGGCAGGTCGGTAACCGGCCGATAGCGCTGGTGGAGGTG GTGGTGGGTGTTGGTGTCGGTGGTTATGGATGGTGATGCGTGATGATGGT AGTGGTGGTGGTGGCGGCGGTACTTGTGCTACGTTTTTTTGGGTTGCGGT GTAGGCGAGTACAGTGGTGGATGGTGGGGGTCGTGGGTACTGGGTGATGG TGATGGGTTGGGTTGGGTTGGGTTGGTTTGTAGGTGTTTGGTGCGTGGCG GCACCATCTGTTGTCGGTTTCATATCTGAAGTGTCTCTCCTCTCTCGGCT CGCCGTCCTTCAGGCGGACCGCGAGCGCGCGTTGGGGCAGTTCAAGTCCA AGGAGCGACCTCTGATGGTGGCGACGGACGTCGCCGCGCGAGGCCTGGAC ATCCCGGACGTGGAGTTCGTGATCAACTACTCCTTCCCGCTTACCATAGG TGACGACGGTGGGGGTGGGGGGTGTACTCATGGTCATTGGGACGTACTGT TGGTTTTCTTGCCTTCGTCATTTGACCATTGACCACGCATCCCTTTTGAG ACGGGGGGGGAGGGGGGTGTACACATTGTCATGCATGGCCGTAGTCGTAT GGTCATACACCATCGCATCCCTACAATGCCGGGACGGAACGGAGCACGTC GGTTTTTTCACCGACCAGGCAGACATTGGTTGCACCAAGCGCGAAGCCAA ACGTGAGGTGTCCGGCGAGTCGCACGAAGGGTGACTGAGAACCGCTTTGT GAGGCGGACTTGCGTATGGATGACAGCTTTAATGAGATAATTTAATTTCC GGTGTGACCACTTCCGGAGACAGCAATGGGAGTACTATGTAACTGCCTCT TGGATGCCTTACCATGAACACCACGTGATGCGATCATTCCCACTTGTGCG GAGTAAAGGTTGTTCACCCCGCACAAATGGTCCAACTAACTCGACCACCA GCTGTGACCAACCGCCAAAAAAACAAGAACAAAAACAACATAAACAGTGC CCTGGTTGTCTAGCTCGAATAGTGAGCGCCAATCCACCCTCTACCCCGCC GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCACCCCCAACG CGCACCGCCCCCGCGGAAGACGGGCCGGGGGCGGCGGGAAAAAGGGGGGG TCGCACACGTACTTCCATCAGGGGGACAAGGCGAGGGCGGGGGAGCTCGT CAACGTTCTCCAGGTGCGTTGATAGATTTGGTGCATCGGGGGGGGGGGAA GTCTTTTTTTTTTTTTTACGGAGGCACAAGTGTAGAGCAGGAGAGGCAGT GAGGAAGGGGGAGCGACCCAGAGAGCGGAGGGATATTCGGACCCTTTTTT GGCTGAACCGCGCGTGTTAAGAGCAGCAACGGCAGGGGGCGGAGGTCATT TTTGTGTTTGATTCGCAGTATTTGGCAGCGCTTACCTAAAATTGGGAATC GAAATAGTTTTGACTTTTGCACGAAACAACCTTTTTTTTTTTTTCATTGG TTGCGTATTTCGTGATAACTGTTGTTTTGTGTTGTTTTGTTTTATTTTGT ACTCAAAGTAGTGTCCCACCTTCCATCCCACCCAACCCAACCCAACCTAG CCTACCCCACGCCATCCCATGCCGCCCCCCTCCCCCTCCCCATCCCGTGG CTGTACCCCGTAACGGTTTGAATGACAGGACGCGAACCAAACGGTGCCGG AAGCGTTGACGAAGTTCGGGACCCACGTCAAGAAGAAGGAGCACAAGCTG TACGGGGCGTTCGCGAAAGACGTTGACATGGACAAGAAGTCGACCAAGAT CACCTTCGATGATTCGGACGACGAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11558:174..2101+

>mRNA_M-pyrifera_M_contig11558.3225.1 ID=mRNA_M-pyrifera_M_contig11558.3225.1|Name=mRNA_M-pyrifera_M_contig11558.3225.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig11558:174..2101+ (Macrocystis pyrifera P11B4 male)
ACAAGGGAAAACCGAGTGTTGGTGTTCGCGCTGTACAAGCGCGAAGCGGC
TCGTTTGGAGCAGTTCCTGCAGCGAAATAACTACGACGCCGTTGCGGTGC
ACGGGGACAAGGGGCAGACAAGGGAAAACCGAGTGTTGGTGTTCGCGCTG
TACAAGCGCGAAGCGGCTCGTTTGGAGCAGTTCCTGCAGCGAAATAACTA
CGACGCCGTTGCGGTGCACGGGGACAAGGGGCAGGCGGACCGCGAGCGCG
CGTTGGGGCAGTTCAAGTCCAAGGAGCGACCTCTGATGGTGGCGACGGAC
GTCGCCGCGCGAGGCCTGGACATCCCGGACGTGGAGTTCGTGATCAACTA
CTCCTTCCCGCTTACCATAGGTGACGACGGTGGGGGTGGGGGGCGGACCG
CGAGCGCGCGTTGGGGCAGTTCAAGTCCAAGGAGCGACCTCTGATGGTGG
CGACGGACGTCGCCGCGCGAGGCCTGGACATCCCGGACGTGGAGTTCGTG
ATCAACTACTCCTTCCCGCTTACCATAGGTGACGACGGTGGGGGTGGGGG
ACGGGCCGGGGGCGGCGGGAAAAAGGGGGGGTCGCACACGTACTTCCATC
AGGGGGACAAGGCGAGGGCGGGGGAGCTCGTCAACGTTCTCCAGACGGGC
CGGGGGCGGCGGGAAAAAGGGGGGGTCGCACACGTACTTCCATCAGGGGG
ACAAGGCGAGGGCGGGGGAGCTCGTCAACGTTCTCCAGGACGCGAACCAA
ACGGTGCCGGAAGCGTTGACGAAGTTCGGGACCCACGTCAAGAAGAAGGA
GCACAAGCTGTACGGGGCGTTCGCGAAAGACGTTGACATGGACAAGAAGT
CGACCAAGATCACCTTCGATGATTCGGACGACGAGTAGGACGCGAACCAA
ACGGTGCCGGAAGCGTTGACGAAGTTCGGGACCCACGTCAAGAAGAAGGA
GCACAAGCTGTACGGGGCGTTCGCGAAAGACGTTGACATGGACAAGAAGT
CGACCAAGATCACCTTCGATGATTCGGACGACGAGTAG
back to top