mRNA_M-pyrifera_M_contig11553.3221.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11553.3221.1
Unique NamemRNA_M-pyrifera_M_contig11553.3221.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11553.3221.1 vs. uniprot
Match: D7FSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.180e-11
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 MGAGASAASMSVEERRKMYEVLRETHTRSDLDALAEEEKQAWLEVLE 141
            MGAGASAA M ++ERR +YE L+  +TRSDLD LAEEEKQAWLEVL+
Sbjct:    1 MGAGASAAGMPLQERRDLYEDLKNKYTRSDLDNLAEEEKQAWLEVLD 47
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11553.3221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSD6_ECTSI3.180e-1172.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11553contigM-pyrifera_M_contig11553:92..8020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001020.1
Exons2
Model size141
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815671.0547717-CDS-M-pyrifera_M_contig11553:91..1721622815671.0547717-CDS-M-pyrifera_M_contig11553:91..172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11553 92..172 -
1692277514.2610924-CDS-M-pyrifera_M_contig11553:91..1721692277514.2610924-CDS-M-pyrifera_M_contig11553:91..172Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11553 92..172 -
1622815671.0666866-CDS-M-pyrifera_M_contig11553:7960..80201622815671.0666866-CDS-M-pyrifera_M_contig11553:7960..8020Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11553 7961..8020 -
1692277514.2730985-CDS-M-pyrifera_M_contig11553:7960..80201692277514.2730985-CDS-M-pyrifera_M_contig11553:7960..8020Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11553 7961..8020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11553.3221.1prot_M-pyrifera_M_contig11553.3221.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11553 92..8020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11553.3221.1

>prot_M-pyrifera_M_contig11553.3221.1 ID=prot_M-pyrifera_M_contig11553.3221.1|Name=mRNA_M-pyrifera_M_contig11553.3221.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MGAGASAASMSVEERRKMYEVLRETHTRSDLDALAEEEKQAWLEVLE
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mRNA from alignment at M-pyrifera_M_contig11553:92..8020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11553.3221.1 ID=mRNA_M-pyrifera_M_contig11553.3221.1|Name=mRNA_M-pyrifera_M_contig11553.3221.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7929bp|location=Sequence derived from alignment at M-pyrifera_M_contig11553:92..8020- (Macrocystis pyrifera P11B4 male)
ATGGGTGCCGGAGCGAGCGCGGCGAGCATGTCCGTGGAGGAGAGGAGGAA
GATGTACGAGGTGGGCCATGTCGTTGAAGAGTGTACGGGGTACTTGTACA
GGAAACCTATCATGCTTATCCTATTTACCTGGTATATCGCATTGCACTAT
ATATAGTGCTGCTGTACAAGCACACACATCGGACAGATGATCGATTCTAA
CTTCGTGATCTATTAATAGATATTTCAGGGCAGATATACGCCCTGGTCTG
GATGATCTGTATGATTAACAGTATACCAGGTACATACCATGCTTGCCTGG
TGGGGGGGGGCGGGGGGGGGTGGCGTGTAAACTGCAAGGTCTACACGTGT
AAGTCATGCTTCCTAAGGTATAGGTCTGTACTACAGCAGTAGTATTCAGA
TCCTGCGCTGTATCTAAAAGCGACAGATCACGGTCTTATACGTAACCCTT
CAAGAACTGCAGTCCCATTTTGGCGACAAATAACTTGGAATTAGAGTGCT
TTGTCCCCAAAACGGGACTGCGGTCCTCAAAGATGGTCTACAGCATCTGC
CTGCAGATCATGATCTATCTAACGCGTATAATCGTACGTATCAAGTCGGA
ATTGGAACACGTACGACACATTGTCGGAGGGCAAAAACAAATAATAATAT
CGCTCTGTCCCTAAATATAGAAAATATTTCGATTGAAAAATAGTATAAGA
ACGGTCATTACATTCGAAACCCAAAAGTAGTGGTAAGAGGGTTGAGTTCG
CACAGCAGTGGGGAGGATACAATCGTTTTGCAGCGCTCGGCTTTTTTTCT
TTTTTTTTTCCAGAACGAACGGGAAGGTTGCCAATACTATTACGGGGGAC
CATAGTAAATAGGACCAAATATTGTTAGTAAAAATAGGTGAATATATAGG
TTTTTATGTATACCATAGGTCCTATTAACTAAGGACCCCCGTAGTAACAC
TACTGTAACAGCAGTAGCAGTAGAGCGAACTGCAATCCCGTTTTGGGGAC
AAACTTCTTAGAATTTGAGATTGCCCTCAAGGGGCTGTAAGCAAGGTGTT
TTCGGAAAGTATCTGGTCGAGAGCAAGCCCTCCGAAGACACGACGTCTTT
ACCCGTTCGTTGTCAAGATACAACGAGCGCTGAAAAAACGACCGCATCCC
CCTGTGTGTACTCGAAACGCTCTTAACCCTTTGAGAACTGCGGTCCCATT
TTCTGGGACAAACCAGTCAAATTCCAAGTAATTCGTCCTCAAAACGAGAC
TGCAGCCCTATTCATAACAATCCTGAAAGGGTTAAGACACGTCCACCTTT
GAAGTTCAGAGGGAAACCTTGCCGAAAGATTTGATTGATTGCACACAGCA
TCGGCCACACAAGTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCGGCCCACCCCCCCCGCGCGCCNNNNNNNNNNAAGGGTGTAGACCCCCC
CCCCCTTTAACTTCACAGGGAAACCCTCCCGAAAAATTTCTTTGATTTCA
CCCGCCAGCGGCCCACCAAGTCCCCCCCCCCCCCCCCCCCCGCGGATGCT
ACCCCGGAACACAAAGTGTCGTTTATGCGGCAATAGGTCATTCAGACGAT
CTTTAATTCTCGGGGCAAAGAGGCATCGCTCTGGACGGAATTGTAAGGGC
CGCTTAGGCACTCTTCGAAAGATCAAGCAGTCTTTTTTTTACTCACGCCC
AGAGCGGTCTGTCTAGCCGGCAAACACAGCAGCACTAGTGCTGTAGTACT
ACAGGACACCTAATGCTGTATTTATGGTACCAGACGGTGATGGTGTTATG
ATACTGTGCTTTGTATGAGGTTGAAAGCCCGGTTTACCCGGGTTCGGGGA
CTGGGAACGTATTGTAGTACTTGGAAGGCGTATTTTAGGAGGAAAACCGG
GGGGTTTCCAGAGACGCACGAGCTTGGTCTCAGTCTCCGCGTGCACGAAC
GGAGTAAAGCTGCTGCTCTTTTTCTATCTGTAAGCAAACAACACACGTGT
ATGAGTACCAACGAGTACCGATTTAATAGGCAAACCTGTCCAGGGATACA
AAGTGCCCCGCATGCTTGATCTTAACTAAAGCGTATTGTTGACAAGAAAA
CCGGCACTATAAAAAACCAGGCTGGCATATATATGTGCACAGGAAAATAG
GAAAATGCCGGCTCGATTTTGTCTTGAAGTTAATATGCTGAAGTAAGCGT
AGAACACACCCTGCCCTTCCCCAAACAAACCTGCCCATTGCTGTTCTGAA
CCATTTTGACTTGACAATAATATATAGTAGTATCACAGGCGGCCGGGACC
CCTCCCCTTGCACAATGTGGGCGAAAAGAAAATGATTGTGGAGACATGAA
ACAATGTGGCACACCTCACAAGGTGTCGATAGCCTCTCGATCCAGAGTGG
TGTTCTGCATGGTTCAACGCCTCTTCTGCAAGTTTTTTTACGGCTACCTT
AGTGAGCAGGGGGGGGCGGGGAGGGTCCCGGCTGCCTGTGATGGCGACCA
AAATACGACAAGGCAAGCACAGCAGTGTTATTATATCAACAATGTGCTAC
TTTCTAATGGAGGTGGAGCATCAGCAGTGCACGCATATCGTCATTTCCTG
CCGCCGACGCCAGTTCCGAAGCGGGGGGAGTGCTATTAGGTTTAGATTGA
GTGGGTACTCGGTCAGTCCTTTACCAGTAGCCCAAGGGACTAAGGCCTTA
ACCAATGGCGTCGTCCGCAGGACACGAGGCGTTGCGCGTGAGTTCGAATC
TTCACGTCTACCATGAACAAAAATCTTTTAAGGAAATGTGAACTTCCTCA
TGTCCAAGAATCTGATAAAACACTCTTCCAGGGTCCCCAGAGATTGTCAA
GAACATCGGACTAGGCATGTACGGTCCCATAGGAAGGAAGACGAAGGACC
CTGTTGTTCTTAAGGAGGGGGGGGAGTATCACGAGGCTCGGATTTTGGGT
AGACGATCGATTAACCTTTTACTATTACTTACTATTACATGGGACCGTAG
TAAATGGGACCAAATTTGTTAGTGAAAATAGGGAAATATATAGGGTTTTG
TGTGTACCGTAGGTCCTATACACTACGTATGGCCCTCCGCAATAGTAGCC
CAGCCGTGAAGACCATAACATCATCTTCTGGGCGCGTGTTGTGTGTGTTC
TTCACATTACGCCGTCCTTTGAACCCGTCGACATCCAGGATACCCAGTGT
CCGTCAGCCGTGTCGATTCTTCGATATTAGAGCATGAATGAGAGAGATTG
CAAGCTCTCTCTGTGGCCACAAAACTACAACACAGCGGAAATATTATCAC
TACGTTGTTACGCCTTAAGTTGCGCCTTTTGACAAAACACACACATTTGA
GACTACTCTAGTTCTATAAAGTCGGTCGCCCCGATGGCCTGTAGAGGTTA
CCTTCGAATGCTACAACTATATCGTTGATACGCGAGTTCGAATCCCGTCG
TCCGCCGTGAGAATTTGACTTTAGTTCGTAGGAAAAACAAAAAAAATCAA
CTGCTGAGAGCGCGCGTTGTAGCGTGGGTAGGCGCAATAGTCAACTATTA
GGGGAAAAAAGGACATAATTCGTCCCCCGGAAAAAAAAGCAAGGCACACA
CCGAGGGGGGCAGGGAGAAGAAGACTGCTGTGCGAACCTGGATCTGGGGT
TACGACTACAGTGGGAAGGGAGACAGAAAGGAAGGGCGAAGATAATACAT
GGGACGGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAACGAAGCACGAAGCACGAAGAACGAAGAACGAAGAACGAAGAACGA
AGAACGAAGAACGAAGAACGAAGAACGAAGAACGAAGAACGAAGGGATCC
TCCTATGTACGCGTGTTACATGACTTAGGCTACCCTATTTGCGAGGGGCT
ACGCACCGTGATCAGAACCAACGACGGACCCGAGAACCGAGTAAATCTCC
AAATAGTTACCCCGCAAATATTTAGTTCTGATTAATAGGTTCCCCCGCAA
ATAGTACTTTTGACAGTAATGTGCACTAATCGGCAACATCTAGACCTATC
GGGTCGGAGTGTTAGCTGTGTGCAGTGGAACCATGCGCTCGTGTGGCACA
GCTGTGATAAATCGATCAACTATAAGAATGATCATCATTTTTTTGTGTTG
GCAACCGCAACTACAATTCCTGCTACCACCACTGCTGCTACTACTACTAT
TAATACTACTACCAACACCGTTACTACTAGTACTAGTACTAGTACTACTG
CTGCTGCTACTACTACTACTACTGCTACTGCTACTACTACTATTAATACT
ATACTGCTACTACTACCACCACCATTTCTAATGCTGCTACTACTACTACT
AGTACTACTACTATAAGCATCATCTTTCTTGTGTGAGAGATTTGGTGGGA
TGGTGACACAGAGGTGTGCGACGCGCCTTGTCGTACGCATCATCATCATC
ATCATTATCATCATCATCATCATCATCACCATCATCATCATCATCATCGG
ATCCTTTTGTCTGCACGAACTACGTAGACAATATTCTCTTGCTCGACATC
TTACAACGGCAAACACATGATCTACATGATCTACCTGATCTACATGATCT
ACATGATCTAGATCGTGGTCATGGGTATCCGTATTACCCCATATGGATAC
TGCTTGATAAAACGTCGGTTAAGAGCCAGTGGAATCATTCGTAAGGGGTA
CTGCTATTTATTGGTGTGATCTCTTCCAAGTATTAAGGTCTATTTATCGC
GCCTTTCCTGTTTCAAGCCATTGGATTCTAGTGTACCCCTTTGTATTTGG
ATAGTATGATCGCAATAATGTCACATGGAAAACGGAATACTACCACTACT
ACCACTACTACTACTAACTTACCAGTTGCACCCGCCATCAAGAAACGCCT
ACGTACGTACCTGTGTATCAGGAGTGATGGGAAAACACGTTATCACACGG
GTGATAAGATAACACGCCATCACACCGGTGATAAGACAACACGTTGTCAC
ACGGGTGATAAGGTAACACCGTGTCACACGGGTGATAATATAACACACTA
TCACACGGGTGATGGTATAACACACCATCACACGGGTGATAAGGCAACAC
GTTGTCACACGGGTGACAAGATAACACCGTATCACACGGGTGATAATATA
ACACACTATCACACGGGTGATAATATAACACACCATCACACGGGTAATAA
GGTAACACACTATCACACGGGTGATAAAAATAACATACTATCACACGGGT
AATAAGATAACACACTATCACAGGGGTAATAAGACATAACACACCCCCTC
CGACGAACTCCCGAGCGTCCCATCTTAAGATCTCTCGACAGGATATTTTC
CAAAGCCAACGAGCGGCTATCGCATGCTGTGTGCCCCCCCCCCCTAATCA
AATTCATCTCATGGGTGCATCGCCATCTTGCGTGTTGTAAGGTGACGTGC
GAGCACTCTGAACAGTCTGAATGAACTCCGGTATTACTGTGAAGAAAAAT
AGAAGTAAAATACCGAAGCCGTGAGAAAACGAAAAATGCTCAGAAGTCAT
ATTACTTCGCAAGGTTAGTGTCATGGTGCTGCTTTGCATGAGGCTAAAAG
CCCGGTATTTACCTGGGTTCATTCAGGCACTGGGATCGTGTTTGTAGTAC
TTGGGAGGCGTATCTTAGATTGAAAACCAGGGATTTTCCCAGCGACCCAC
AGGCTTGGCTCCAAGTCTCTGCGTGCACGAAAGGAATAAAGCTGCTCCTC
TTCTATCTCTTATGCAAACAACGCGCGTGAGTACCAACGAGTACCAGCTT
AACAGGCTAACCAAACTGTCAAGGGATACAAACTGTCCCGATCCCTGACC
TTAACAAGTGGCACCGTCGGCAGAACAGAACACAGGGTTGTCTTTTAGTA
CCGCAGTCCCGTTTTAGGGACAAATGACTTGGAATTAGACTGGTTTGTCC
CCAAATCGGGACCGCGGTACTAAAGGGGTTAAGTGGTTCTTGGCGTATTT
TGTTTTATTTTTGTCCTCTTTTTTACTGTTCACATTTCGCTTTTCCGTAG
AAACTTTCTTGCCCCATCCAAATTGCGGATGGCATGGCGGTGGCTTTCGT
CGACAATTTATTCCTGCCCCTTAAGGCTAGGCTTTCCTTTATTTCGCTTT
TTGACGCACCTGACCGGCTTCGTTGCCTTGCCGTTCAGAGGTGTGGGCGT
GGGTTTTGAGGAGCCGCATCTTCGACTCATATTCTAGCTTGTAGAATCGG
GATTTCCACTAATTCCCCATATTTCTGCATACACGACTCATCAGAGTGAG
CTAGTGCTATAGTACTGCTTAGAATGAGGCTGGAAGCCCGGTAACTACCT
GGGTTCAGGCACTGGGATCGTATTTGTAGTACTTGGGAGGCGTGTCTTAG
ACGGAAAACCTGGGTTTTTCCAAGCGGGGCGCGAGCTTGGCTCCCAGTCT
CCGCGAGCACGAAAGGAGTAAAGCTGCTCTTGTTCTGTCTCCAAGCAAAC
GACACACGTGAATGCCAACGAGTACCGGCTTAATAGGCAAACCTTTCTGT
CCAGGGATACAAAGTGTCCCGACCCCTACCCTTAACATTGTTGCGATAAC
TCGATCGCGCCTTCTGCGGGGTGAGCAGGCTTCTATACAGCTTTTTGTAG
AGGGGTCTACATATTATTGCAGGTTTGTTAGGATGTTCGATGAAAGTCGT
AACGGTAGGTGTGCTACAGATTGTCGGAGGGAAACTTATGAGTTCTGTCA
CCATGCTATAACGCTAACCTCCACAATATTACAACGCTAACCTTCACAAT
GTCACGACGCTAACCTTGATCATAGGTTTACTATATTCAATTAATACCAG
GTGCGAGCACCAGGCAGGACTTATTTAGTGCAGGGCTCGCTTGACGAGCT
TTAGCCTACATTTTCTGTTGCGGGTCCGATCAGCTCGCAACCCTGTATCA
TAGCTGAAACTACAACCGTGTCAAACTCGTTGTCCGGATACATGCGTCAC
CCAACTGCTGACTTTTGATACGAAAAGGGACACGTGTGTGCAACGAACCC
ATGACCTGTTTTTTTCGTCGGCAAAAAATGATCGAACAAAAAAAAACACA
CACACACACAAAACAACGGGAACCAGAATTGAGTGGGTGGAAGTAGATTC
ACTAAAATACTCAAGCTACAGTACTACTTGCTATTGTTGTATGCAGCGTG
AAATAATTATAACGTTGTCTGTGGGAGAGGATCACAAGTACCTATCGTGT
ACATACTTCGTACGACACAACGCTCTTTACTTGCAGATGATCGATTCGTT
TATATTCAAGATTTACTTCTGTAATTCCCCCCTATGACGCACACCGTGTT
CCCTCGGGAGTTGGGAAAACATGAATTCACACTTCATGACCCAAGCCATT
AAACAATACATCCCACACACCCGCGGCTTGCGAAGACTTGGTTTTTGGTT
AAAAACCGTTTTGGATGAGTTTCTTGTGGTCTGTTTCCCGTACGAAAAAC
GACCCCGACCCACGCAACTGCTGTAGGATGTTCCTTCCTAAGGTTTTCCC
GAAAAACAAAAGTGGCCAGAAGGTCACTTTTCCCCCGATCGTTCCAGGGG
TTCTTGGGTAAACTCTTAGGAAACGTTCCATGGGCTGGGGTCGTTTTTTT
TTTCCCAGAAGGGAACAGAACACAAGAAACCCCAACCAATTTGGTTCCTG
CCAAAATTCTTCGAGGACACGCTCGTCACAAAAAAGGATGGATGGTTGAA
TTTATTTCATTCATACCTCGGGTACTGCCGTATTTCGAGCCACGCGATCT
ATAAAGTACAGCGATCTCAACCCTCTCTCTGGTGCATTGTTACGACAGGT
GCTCCGAGAAACACACACGAGGAGCGACCTCGACGCGTTGGCCGAGGAAG
AGAAGCAGGCGTGGCTGGAGGTGCTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11553:92..8020-

>mRNA_M-pyrifera_M_contig11553.3221.1 ID=mRNA_M-pyrifera_M_contig11553.3221.1|Name=mRNA_M-pyrifera_M_contig11553.3221.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig11553:92..8020- (Macrocystis pyrifera P11B4 male)
ATGGGTGCCGGAGCGAGCGCGGCGAGCATGTCCGTGGAGGAGAGGAGGAA
GATGTACGAGATGGGTGCCGGAGCGAGCGCGGCGAGCATGTCCGTGGAGG
AGAGGAGGAAGATGTACGAGGTGCTCCGAGAAACACACACGAGGAGCGAC
CTCGACGCGTTGGCCGAGGAAGAGAAGCAGGCGTGGCTGGAGGTGCTGGA
GGTGCTCCGAGAAACACACACGAGGAGCGACCTCGACGCGTTGGCCGAGG
AAGAGAAGCAGGCGTGGCTGGAGGTGCTGGAG
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