mRNA_M-pyrifera_M_contig115522.3219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115522.3219.1
Unique NamemRNA_M-pyrifera_M_contig115522.3219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A2E7D5T3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D5T3_9PLAN)

HSP 1 Score: 89.0 bits (219), Expect = 9.630e-19
Identity = 40/85 (47.06%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 SGMLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDV 255
             G++E+L+PS +R+VP+ L+  LL +Y+ AIGP D+  LG  R+R+ TW++FPA+TV FT   VW S +YM+++  + +LI+RDV
Sbjct:  381 GGLVERLMPSDVRVVPLSLIGFLLFLYVMAIGPADFIILGIFRIRRFTWILFPAVTVGFTLFTVWLSHRYMATNQSQGSLIVRDV 465          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: UPI00029A3C42 (hypothetical protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029A3C42)

HSP 1 Score: 80.1 bits (196), Expect = 1.240e-15
Identity = 36/83 (43.37%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 MLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDV 255
            ++E+L+P G+R+VP+ ++  +L+ ++  IGP +Y+ LG LRLRKLTW+ FPA T+  T+L +W S+ YMS+ + R  + I D+
Sbjct:  337 LIERLMPEGVRMVPLSVLATILVAFVILIGPGEYFVLGWLRLRKLTWLTFPAATIGVTALTIWVSNSYMSAAETRRAVTICDL 419          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A3B8PQM9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8PQM9_9PLAN)

HSP 1 Score: 80.1 bits (196), Expect = 1.250e-15
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 SGMLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDVAE 261
            + ++ +L P    +VP+ L+ LLL+ Y+  IGP DY  LG L +RKLTW++FP MTVAFT L VW S ++M +  +   LI+RD+ +
Sbjct:  410 NSLVARLTPDDFEVVPLWLLGLLLIAYIVVIGPVDYLVLGWLGVRKLTWIVFPLMTVAFTLLIVWISHEHMGTSGNVRQLIVRDIGD 496          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A3B8M0C9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8M0C9_9PLAN)

HSP 1 Score: 80.1 bits (196), Expect = 1.250e-15
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    1 SGMLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDVAE 261
            + ++ +L P    +VP+ L+ LLL+ Y+  IGP DY  LG L +RKLTW++FP MTVAFT L VW S ++M +  +   LI+RD+ +
Sbjct:  410 NSLVARLTPDDFEVVPLWLLGLLLIAYIVVIGPVDYLVLGWLGVRKLTWIVFPLMTVAFTVLIVWISHEHMGTSGNVRQLIVRDIGD 496          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A517QU95_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QU95_9PLAN)

HSP 1 Score: 77.4 bits (189), Expect = 1.100e-14
Identity = 37/85 (43.53%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 SGMLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDV 255
            +G+L + LP G++++P+ L+ + LL+Y+ AIGP DY+ LG L LRKLTW+ FP +TV FT  A+ ++++ M   D+   +II D+
Sbjct:  402 NGLLAETLPVGMQMLPLWLIGVTLLLYIIAIGPLDYFLLGALGLRKLTWIFFPVVTVLFTVGAIVSANRTMQGKDEGGRVIIHDI 486          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A7W0M8E2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0M8E2_9PLAN)

HSP 1 Score: 76.6 bits (187), Expect = 2.050e-14
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 SGMLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDV 255
            +G++E L P  LR++P  ++ L+L  Y+A I P +YW LGKL++RK TWV FPA+T+A T   V T+D +MS++D   ++ I D+
Sbjct:  351 TGIVEALRPQNLRMIPGWVVMLILFGYVAVIAPGEYWLLGKLKMRKWTWVTFPAVTIALTWAVVATADSFMSANDHVRSVDIVDL 435          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A3L7SGZ7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SGZ7_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 3.840e-14
Identity = 35/83 (42.17%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    7 MLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDV 255
            +L  L P+G+++VP+ L+ ++L+ ++  IGP +Y+ LG LR RKLTW+ FP  T+  TSL VW S++YM++ + R ++ I D+
Sbjct:  385 LLNHLTPTGVQIVPLWLLAMILIAFVCLIGPGEYFGLGLLRARKLTWITFPLATIGVTSLTVWLSNRYMTAGETRQSIEICDL 467          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A3L7UZ86_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7UZ86_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 3.840e-14
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   13 EQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDVAE 261
            + L+PS + +VPI ++ ++L+ Y+AAIGP DY+ LG LRLRK TWV+FP +T +FT L V  +  +M S+D    L+I D+ +
Sbjct:  426 QALMPSDVEMVPIWIIGMILMGYVAAIGPGDYFLLGWLRLRKYTWVVFPVITGSFTLLTVLVAQAFMGSEDTGGKLVITDLVD 508          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A3L7VSR8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7VSR8_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 1.820e-13
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   13 EQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDVAE 261
            + L+PS +++VP  ++ ++L+ Y+ AIGP DY+ LG LRLRK TWV+FP +T  FT L V  +  +M S+D    L+I D+A+
Sbjct:  399 QALMPSDVQMVPTWIIGMILVGYVVAIGPGDYFLLGWLRLRKYTWVLFPVITGVFTLLTVMVAHAFMGSEDTGGKLVITDLAD 481          
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Match: A0A7C2JY79_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JY79_9PLAN)

HSP 1 Score: 70.1 bits (170), Expect = 4.100e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   13 EQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMFPAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDV 255
            + L+P+G++LVP  L+ LLL   +  IGP ++W LGKLRLR+ TW+ +PA TVA T+L V  S+ YM S +    L I D+
Sbjct:  376 KLLMPAGVQLVPFWLIVLLLGGLVVTIGPGEWWLLGKLRLRRFTWLTWPAATVAVTALTVGLSNSYMRSAEQSRFLQITDL 456          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115522.3219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2E7D5T3_9PLAN9.630e-1947.06Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI00029A3C421.240e-1543.37hypothetical protein n=1 Tax=Schlesneria paludicol... [more]
A0A3B8PQM9_9PLAN1.250e-1544.83Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3B8M0C9_9PLAN1.250e-1544.83Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517QU95_9PLAN1.100e-1443.53Uncharacterized protein n=1 Tax=Thalassoglobus pol... [more]
A0A7W0M8E2_9PLAN2.050e-1444.71Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3L7SGZ7_9BACT3.840e-1442.17Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3L7UZ86_9BACT3.840e-1445.78Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3L7VSR8_9BACT1.820e-1344.58Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C2JY79_9PLAN4.100e-1246.91Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115522contigM-pyrifera_M_contig115522:306..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.7
Seed ortholog evalue7.2e-13
Seed eggNOG ortholog1123242.JH636434_gene5314
Hectar predicted targeting categorysignal anchor
EggNOG OGs2CCV5@1,2J30B@203682,32RWG@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size255
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.964251-UTR-M-pyrifera_M_contig115522:305..3111622815670.964251-UTR-M-pyrifera_M_contig115522:305..311Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115522 306..311 +
1692277514.2213128-UTR-M-pyrifera_M_contig115522:305..3111692277514.2213128-UTR-M-pyrifera_M_contig115522:305..311Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115522 306..311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.9744484-CDS-M-pyrifera_M_contig115522:311..5661622815670.9744484-CDS-M-pyrifera_M_contig115522:311..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115522 312..566 +
1692277514.2311568-CDS-M-pyrifera_M_contig115522:311..5661692277514.2311568-CDS-M-pyrifera_M_contig115522:311..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115522 312..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115522.3219.1prot_M-pyrifera_M_contig115522.3219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115522 312..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115522.3219.1

>prot_M-pyrifera_M_contig115522.3219.1 ID=prot_M-pyrifera_M_contig115522.3219.1|Name=mRNA_M-pyrifera_M_contig115522.3219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MLEQLLPSGLRLVPIGLMFLLLLIYLAAIGPFDYWFLGKLRLRKLTWVMF
PAMTVAFTSLAVWTSDQYMSSDDDRNTLIIRDVAE
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mRNA from alignment at M-pyrifera_M_contig115522:306..566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115522.3219.1 ID=mRNA_M-pyrifera_M_contig115522.3219.1|Name=mRNA_M-pyrifera_M_contig115522.3219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig115522:306..566+ (Macrocystis pyrifera P11B4 male)
TCGGGCATGTTGGAGCAACTGCTGCCATCCGGGCTCAGGCTTGTTCCCAT TGGGCTGATGTTCCTGCTCCTTCTGATCTATCTCGCGGCCATCGGCCCTT TCGACTACTGGTTCCTGGGAAAGCTCCGCCTACGAAAGCTCACATGGGTG ATGTTCCCTGCGATGACAGTCGCCTTCACGAGCCTCGCCGTCTGGACGTC CGACCAGTACATGTCCTCTGACGATGATCGCAACACGCTCATCATTCGAG ATGTGGCTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115522:306..566+

>mRNA_M-pyrifera_M_contig115522.3219.1 ID=mRNA_M-pyrifera_M_contig115522.3219.1|Name=mRNA_M-pyrifera_M_contig115522.3219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig115522:306..566+ (Macrocystis pyrifera P11B4 male)
ATGTTGGAGCAACTGCTGCCATCCGGGCTCAGGCTTGTTCCCATTGGGCT
GATGTTCCTGCTCCTTCTGATCTATCTCGCGGCCATCGGCCCTTTCGACT
ACTGGTTCCTGGGAAAGCTCCGCCTACGAAAGCTCACATGGGTGATGTTC
CCTGCGATGACAGTCGCCTTCACGAGCCTCGCCGTCTGGACGTCCGACCA
GTACATGTCCTCTGACGATGATCGCAACACGCTCATCATTCGAGATGTGG
CTGAAATGTTGGAGCAACTGCTGCCATCCGGGCTCAGGCTTGTTCCCATT
GGGCTGATGTTCCTGCTCCTTCTGATCTATCTCGCGGCCATCGGCCCTTT
CGACTACTGGTTCCTGGGAAAGCTCCGCCTACGAAAGCTCACATGGGTGA
TGTTCCCTGCGATGACAGTCGCCTTCACGAGCCTCGCCGTCTGGACGTCC
GACCAGTACATGTCCTCTGACGATGATCGCAACACGCTCATCATTCGAGA
TGTGGCTGAA
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