mRNA_M-pyrifera_M_contig11551.3215.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11551.3215.1
Unique NamemRNA_M-pyrifera_M_contig11551.3215.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11551.3215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11551contigM-pyrifera_M_contig11551:8371..8843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.7113867-CDS-M-pyrifera_M_contig11551:8370..87391622815670.7113867-CDS-M-pyrifera_M_contig11551:8370..8739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 8371..8739 +
1692277514.105226-CDS-M-pyrifera_M_contig11551:8370..87391692277514.105226-CDS-M-pyrifera_M_contig11551:8370..8739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11551 8371..8739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.7234793-UTR-M-pyrifera_M_contig11551:8739..88431622815670.7234793-UTR-M-pyrifera_M_contig11551:8739..8843Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11551 8740..8843 +
1692277514.1162217-UTR-M-pyrifera_M_contig11551:8739..88431692277514.1162217-UTR-M-pyrifera_M_contig11551:8739..8843Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11551 8740..8843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11551.3215.1prot_M-pyrifera_M_contig11551.3215.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11551 8371..8739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11551.3215.1

>prot_M-pyrifera_M_contig11551.3215.1 ID=prot_M-pyrifera_M_contig11551.3215.1|Name=mRNA_M-pyrifera_M_contig11551.3215.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
PEGPIRICHYQCSCFCIALDGSRLKLLGTTAGPLCTFSLAAKNESPSVGK
PLGRQGPCSGVGGAEEGVGRLWLWRRMWKPEKMVFGAKTSLASYVKRWFL
FVWCDVIVWTFRQPFFYARTFR*
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mRNA from alignment at M-pyrifera_M_contig11551:8371..8843+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11551.3215.1 ID=mRNA_M-pyrifera_M_contig11551.3215.1|Name=mRNA_M-pyrifera_M_contig11551.3215.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=473bp|location=Sequence derived from alignment at M-pyrifera_M_contig11551:8371..8843+ (Macrocystis pyrifera P11B4 male)
CCAGAAGGGCCCATCAGAATATGTCACTACCAATGTTCTTGTTTTTGTAT
AGCTCTAGATGGGAGTCGGCTTAAACTCCTGGGCACGACGGCAGGGCCAC
TTTGTACTTTTTCCCTGGCTGCGAAGAATGAGTCGCCGTCTGTCGGCAAG
CCGCTTGGTCGGCAGGGTCCATGTTCGGGTGTCGGCGGCGCGGAGGAAGG
AGTAGGTAGGTTGTGGCTGTGGCGGAGAATGTGGAAGCCGGAGAAGATGG
TGTTCGGTGCCAAGACGTCCCTCGCGTCGTACGTGAAAAGGTGGTTTCTC
TTTGTGTGGTGTGATGTGATAGTGTGGACTTTTCGGCAGCCGTTTTTTTA
TGCACGTACGTTTCGGTAGAAGTCGCGACTAAATCGGTTGAACTGTGAGC
CACGCGTCAAACAGATCATTGTCGATCAGCTATCAATAGAGGCCCTAACC
TGCCGTTCTGAGGCGCTGGGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11551:8371..8843+

>mRNA_M-pyrifera_M_contig11551.3215.1 ID=mRNA_M-pyrifera_M_contig11551.3215.1|Name=mRNA_M-pyrifera_M_contig11551.3215.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig11551:8371..8843+ (Macrocystis pyrifera P11B4 male)
CCAGAAGGGCCCATCAGAATATGTCACTACCAATGTTCTTGTTTTTGTAT
AGCTCTAGATGGGAGTCGGCTTAAACTCCTGGGCACGACGGCAGGGCCAC
TTTGTACTTTTTCCCTGGCTGCGAAGAATGAGTCGCCGTCTGTCGGCAAG
CCGCTTGGTCGGCAGGGTCCATGTTCGGGTGTCGGCGGCGCGGAGGAAGG
AGTAGGTAGGTTGTGGCTGTGGCGGAGAATGTGGAAGCCGGAGAAGATGG
TGTTCGGTGCCAAGACGTCCCTCGCGTCGTACGTGAAAAGGTGGTTTCTC
TTTGTGTGGTGTGATGTGATAGTGTGGACTTTTCGGCAGCCGTTTTTTTA
TGCACGTACGTTTCGGTAGCCAGAAGGGCCCATCAGAATATGTCACTACC
AATGTTCTTGTTTTTGTATAGCTCTAGATGGGAGTCGGCTTAAACTCCTG
GGCACGACGGCAGGGCCACTTTGTACTTTTTCCCTGGCTGCGAAGAATGA
GTCGCCGTCTGTCGGCAAGCCGCTTGGTCGGCAGGGTCCATGTTCGGGTG
TCGGCGGCGCGGAGGAAGGAGTAGGTAGGTTGTGGCTGTGGCGGAGAATG
TGGAAGCCGGAGAAGATGGTGTTCGGTGCCAAGACGTCCCTCGCGTCGTA
CGTGAAAAGGTGGTTTCTCTTTGTGTGGTGTGATGTGATAGTGTGGACTT
TTCGGCAGCCGTTTTTTTATGCACGTACGTTTCGGTAG
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