mRNA_M-pyrifera_M_contig101557.321.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101557.321.1
Unique NamemRNA_M-pyrifera_M_contig101557.321.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A3Q8UIP8_ACIBA (Protein ninH n=2 Tax=Acinetobacter TaxID=469 RepID=A0A3Q8UIP8_ACIBA)

HSP 1 Score: 63.9 bits (154), Expect = 3.440e-12
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   10 YLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            Y   + L+E+PLL  T+THTRGNQ +A+++LG++RGTLR KLK HGM+
Sbjct:   29 YATAMQLVEKPLLEITLTHTRGNQTKAAEILGLNRGTLRTKLKAHGMI 76
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BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A429H8L9_ACIBA (Protein ninH n=3 Tax=Acinetobacter TaxID=469 RepID=A0A429H8L9_ACIBA)

HSP 1 Score: 63.2 bits (152), Expect = 6.440e-12
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   10 YLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            Y  ++ L+E+PLL  T+THTRGNQ +A++LLG++RGTLR+KLK HG++
Sbjct:   29 YNVVMELVEKPLLDLTLTHTRGNQTKAAELLGLNRGTLRKKLKAHGLM 76
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BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: D0CFR6_ACIB2 (DNA-binding protein n=18 Tax=Moraxellaceae TaxID=468 RepID=D0CFR6_ACIB2)

HSP 1 Score: 60.1 bits (144), Expect = 1.060e-10
Identity = 26/46 (56.52%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   16 DMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            +++ L+E+PLLA T+  TRGNQ +A++LLG++RGTLRQ+LK H +L
Sbjct:   26 EVMALLEKPLLAETLIKTRGNQTKAAELLGLNRGTLRQRLKAHNIL 71
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BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A1S9ZX86_9GAMM (Putative Fis-like DNA-binding protein n=1 Tax=Moraxella caviae TaxID=34060 RepID=A0A1S9ZX86_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 2.480e-10
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 GRLYLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            GRLY   L  +EQ L A T+ HT GNQ + ++LLGM+RGTLR KLK HG++
Sbjct:   33 GRLYEVFLHDLEQSLFAATLRHTNGNQSKTAELLGMNRGTLRTKLKFHGLI 83
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BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A839V1W0_9GAMM (Putative Fis-like DNA-binding protein n=2 Tax=Halomonas cerina TaxID=447424 RepID=A0A839V1W0_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 4.910e-10
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    7 LYLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            LY  ++  +E PLLA  + HTRGNQ +A+++LG++RGTLR+KLK HG++
Sbjct:   64 LYAMVMAEVEAPLLASVLEHTRGNQTRAAEILGLNRGTLRKKLKHHGLI 112
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BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A2H0D8R2_9GAMM (Putative Fis-like DNA-binding protein n=1 Tax=Gammaproteobacteria bacterium CG22_combo_CG10-13_8_21_14_all_40_8 TaxID=1974025 RepID=A0A2H0D8R2_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 8.790e-10
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    7 LYLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGM 150
            LY  +L  IE PL+   M HT GNQ QASKLLG++RGTLR+KLK +G+
Sbjct:   44 LYELVLAEIEAPLMEAVMKHTNGNQTQASKLLGLNRGTLRKKLKTYGL 91
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BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A1H7KLM7_9GAMM (Putative Fis-like DNA-binding protein n=1 Tax=Halomonas daqiaonensis TaxID=650850 RepID=A0A1H7KLM7_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 2.060e-9
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    7 LYLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            LY  ++  +E PLLA  + HT+GNQ +A+++LG++RGTLR+KLK HG++
Sbjct:   66 LYAMVMAEVEAPLLASVLDHTQGNQTRAAEMLGLNRGTLRKKLKQHGLI 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A5K1I7Y3_9GAMM (Putative Fis-like DNA-binding protein n=1 Tax=Halomonas lysinitropha TaxID=2607506 RepID=A0A5K1I7Y3_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 2.060e-9
Identity = 25/49 (51.02%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    7 LYLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            LY  ++  +E PLLA  + HT+GNQ +A+++LG++RGTLR+KLK HG++
Sbjct:   66 LYAMVMAEVEAPLLASVLDHTQGNQTRAAEMLGLNRGTLRKKLKHHGLI 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: A0A172YKD3_9GAMM (Putative Fis-like DNA-binding protein n=3 Tax=Halotalea alkalilenta TaxID=376489 RepID=A0A172YKD3_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.510e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 LYLDMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML 153
            LY  +L+ +E PLLA  M H   NQ  AS+LLG++RGTLR+KLK HG+L
Sbjct:   44 LYQMVLSEVEAPLLASVMAHVNDNQTAASQLLGLNRGTLRKKLKQHGLL 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Match: UPI00166038DE (protein ninH n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00166038DE)

HSP 1 Score: 56.2 bits (134), Expect = 3.290e-9
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   16 DMLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIH 144
            +++ L+E+PLL  T+  TRGNQ +A++LLG++RGTLRQ+LK H
Sbjct:   26 EVMALLEKPLLEETLIKTRGNQTKAAELLGLNRGTLRQRLKAH 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101557.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q8UIP8_ACIBA3.440e-1258.33Protein ninH n=2 Tax=Acinetobacter TaxID=469 RepID... [more]
A0A429H8L9_ACIBA6.440e-1258.33Protein ninH n=3 Tax=Acinetobacter TaxID=469 RepID... [more]
D0CFR6_ACIB21.060e-1056.52DNA-binding protein n=18 Tax=Moraxellaceae TaxID=4... [more]
A0A1S9ZX86_9GAMM2.480e-1056.86Putative Fis-like DNA-binding protein n=1 Tax=Mora... [more]
A0A839V1W0_9GAMM4.910e-1053.06Putative Fis-like DNA-binding protein n=2 Tax=Halo... [more]
A0A2H0D8R2_9GAMM8.790e-1060.42Putative Fis-like DNA-binding protein n=1 Tax=Gamm... [more]
A0A1H7KLM7_9GAMM2.060e-951.02Putative Fis-like DNA-binding protein n=1 Tax=Halo... [more]
A0A5K1I7Y3_9GAMM2.060e-951.02Putative Fis-like DNA-binding protein n=1 Tax=Halo... [more]
A0A172YKD3_9GAMM2.510e-957.14Putative Fis-like DNA-binding protein n=3 Tax=Halo... [more]
UPI00166038DE3.290e-955.81protein ninH n=1 Tax=Acinetobacter baumannii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101557contigM-pyrifera_M_contig101557:30..185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size138
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.043792-UTR-M-pyrifera_M_contig101557:29..471622815514.043792-UTR-M-pyrifera_M_contig101557:29..47Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101557 30..47 +
1692277445.390533-UTR-M-pyrifera_M_contig101557:29..471692277445.390533-UTR-M-pyrifera_M_contig101557:29..47Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101557 30..47 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.055354-CDS-M-pyrifera_M_contig101557:47..1851622815514.055354-CDS-M-pyrifera_M_contig101557:47..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101557 48..185 +
1692277445.40099-CDS-M-pyrifera_M_contig101557:47..1851692277445.40099-CDS-M-pyrifera_M_contig101557:47..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101557 48..185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101557.321.1prot_M-pyrifera_M_contig101557.321.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101557 48..185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101557.321.1

>prot_M-pyrifera_M_contig101557.321.1 ID=prot_M-pyrifera_M_contig101557.321.1|Name=mRNA_M-pyrifera_M_contig101557.321.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MLTLIEQPLLAHTMTHTRGNQVQASKLLGMSRGTLRQKLKIHGML*
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mRNA from alignment at M-pyrifera_M_contig101557:30..185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101557.321.1 ID=mRNA_M-pyrifera_M_contig101557.321.1|Name=mRNA_M-pyrifera_M_contig101557.321.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig101557:30..185+ (Macrocystis pyrifera P11B4 male)
GGTCGCCTGTACCTTGATATGCTAACGCTTATTGAGCAGCCCTTGCTTGC
GCATACAATGACGCACACGCGCGGCAATCAAGTACAGGCATCCAAGCTAT
TAGGCATGAGCCGTGGGACACTGCGCCAAAAGCTTAAAATCCACGGCATG
CTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101557:30..185+

>mRNA_M-pyrifera_M_contig101557.321.1 ID=mRNA_M-pyrifera_M_contig101557.321.1|Name=mRNA_M-pyrifera_M_contig101557.321.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig101557:30..185+ (Macrocystis pyrifera P11B4 male)
ATGCTAACGCTTATTGAGCAGCCCTTGCTTGCGCATACAATGACGCACAC
GCGCGGCAATCAAGTACAGGCATCCAAGCTATTAGGCATGAGCCGTGGGA
CACTGCGCCAAAAGCTTAAAATCCACGGCATGCTTTAAATGCTAACGCTT
ATTGAGCAGCCCTTGCTTGCGCATACAATGACGCACACGCGCGGCAATCA
AGTACAGGCATCCAAGCTATTAGGCATGAGCCGTGGGACACTGCGCCAAA
AGCTTAAAATCCACGGCATGCTTTAA
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