mRNA_M-pyrifera_M_contig115487.3210.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115487.3210.1
Unique NamemRNA_M-pyrifera_M_contig115487.3210.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: UPI0009E1D420 (DNA annealing helicase and endonuclease ZRANB3-like n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1D420)

HSP 1 Score: 76.3 bits (186), Expect = 1.170e-15
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARR-RRQALLQDAA 192
            L+K   +PK  EG FWEADHI P +EGGG+ GL N+RTLCV+CHR AT  L RR ++Q +LQ +A
Sbjct:   81 LKKMVMEPK--EGMFWEADHITPVSEGGGECGLDNYRTLCVMCHRKATEELNRRLKQQKVLQYSA 143
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BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: A0A2B4RHH8_STYPI (DNA annealing helicase and endonuclease ZRANB3 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RHH8_STYPI)

HSP 1 Score: 74.7 bits (182), Expect = 9.280e-14
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQ 171
            L+K   +PK  EG FWEADHI P +EGGG+ GL N RTLCVICHR AT  L +R +Q
Sbjct: 1833 LKKMIMEPK--EGMFWEADHITPVSEGGGECGLDNLRTLCVICHRKATTELNKRLKQ 1887
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BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: A0A3M6TQS6_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TQS6_POCDA)

HSP 1 Score: 73.9 bits (180), Expect = 1.730e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQ 171
            L K   +PK  EG FWEADHI P +EGGG+ GL N RTLCVICHR AT+ L +R +Q
Sbjct: 1813 LMKMIMEPK--EGMFWEADHITPVSEGGGECGLDNLRTLCVICHRKATSELNKRLKQ 1867
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BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: UPI00077AFF83 (uncharacterized protein LOC107357751 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AFF83)

HSP 1 Score: 73.6 bits (179), Expect = 2.310e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQ 171
            L+K   +PK  EG FWEADHI P +EGGG+ GL N+RTLC++CHR  T  L RR +Q
Sbjct:  765 LKKMVMEPK--EGVFWEADHITPVSEGGGECGLENYRTLCIMCHRKVTEELNRRLKQ 819
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BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: UPI00077A2C87 (uncharacterized protein LOC107344898 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A2C87)

HSP 1 Score: 73.6 bits (179), Expect = 2.340e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQ 171
            L+K   +PK  EG FWEADHI P +EGGG+ GL N+RTLC++CHR  T  L RR +Q
Sbjct: 1062 LKKMVMEPK--EGVFWEADHITPVSEGGGECGLENYRTLCIMCHRKVTEELNRRLKQ 1116
[Close]
BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: UPI001CF4809C (uncharacterized protein LOC114960523 isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4809C)

HSP 1 Score: 73.6 bits (179), Expect = 2.360e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQ 171
            L+K   +PK  EG FWEADHI P +EGGG+ GL N+RTLC++CHR  T  L RR +Q
Sbjct: 1873 LKKMVMEPK--EGVFWEADHITPVSEGGGECGLENYRTLCIMCHRKVTEELNRRLKQ 1927
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BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: A0A6H5JVH0_9PHAE (HNH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.210e-13
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   25 KPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQALLQDAASA 198
            +PT+G+FW ADHI+P   GGGQ  L N+RTLCV CH  AT  LA  R     + AASA
Sbjct:  107 RPTQGKFWHADHIVPVVRGGGQCSLKNYRTLCVPCHAAATRRLAGERAAERARAAASA 164
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BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: A0A7R9UJ75_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UJ75_DIALT)

HSP 1 Score: 69.3 bits (168), Expect = 6.890e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   28 PTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQALLQDAAS 195
            P EG FW+ADH +P AEGGG  G+ NFRTLCV CHR  T AL RR  +   + AA+
Sbjct:   27 PCEGDFWQADHTLPVAEGGGCCGIGNFRTLCVPCHRQETEALRRRLEERKRKAAAA 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: UPI0003F0928A (DNA annealing helicase and endonuclease ZRANB3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0928A)

HSP 1 Score: 71.2 bits (173), Expect = 1.520e-12
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   25 KPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQ 171
            KP+EG+FW+ADHI+  + GGG   L NFRTLC +CHR+ TN  +R+R+Q
Sbjct: 1202 KPSEGKFWQADHIVAVSNGGGLCSLDNFRTLCTVCHRSVTNIQSRQRKQ 1250
[Close]
BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Match: A0A7S1FVY5_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FVY5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.820e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNALARRRRQALLQDAASAP 201
            L+K  ++PK ++  FWEADHI P +EGGG  GL NFRTLCV CH+N T  L +R    L   AAS+P
Sbjct:  952 LDKILQNPKESD--FWEADHIKPVSEGGGDCGLENFRTLCVPCHKNETEKLLKR----LKLKAASSP 1012
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115487.3210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009E1D4201.170e-1558.46DNA annealing helicase and endonuclease ZRANB3-lik... [more]
A0A2B4RHH8_STYPI9.280e-1461.40DNA annealing helicase and endonuclease ZRANB3 n=2... [more]
A0A3M6TQS6_POCDA1.730e-1361.40Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
UPI00077AFF832.310e-1357.89uncharacterized protein LOC107357751 n=1 Tax=Acrop... [more]
UPI00077A2C872.340e-1357.89uncharacterized protein LOC107344898 n=1 Tax=Acrop... [more]
UPI001CF4809C2.360e-1357.89uncharacterized protein LOC114960523 isoform X1 n=... [more]
A0A6H5JVH0_9PHAE4.210e-1355.17HNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9UJ75_DIALT6.890e-1357.14Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
UPI0003F0928A1.520e-1257.14DNA annealing helicase and endonuclease ZRANB3-lik... [more]
A0A7S1FVY5_9STRA2.820e-1253.73Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115487contigM-pyrifera_M_contig115487:310..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog10224.XP_006811177.1
Preferred nameZRANB3
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000228,GO:0000733,GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019222,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031593,GO:0031974,GO:0031981,GO:0032392,GO:0033554,GO:0034641,GO:0034645,GO:0036292,GO:0036310,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048478,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070530,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097617,GO:0140030,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein
EggNOG OGs38C05@33154,3BE0M@33208,3CT9F@33213,COG0553@1,KOG1000@2759
COG Functional cat.B
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.527427-CDS-M-pyrifera_M_contig115487:309..5641622815670.527427-CDS-M-pyrifera_M_contig115487:309..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115487 310..564 +
1692277514.0385954-CDS-M-pyrifera_M_contig115487:309..5641692277514.0385954-CDS-M-pyrifera_M_contig115487:309..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115487 310..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115487.3210.1prot_M-pyrifera_M_contig115487.3210.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115487 310..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115487.3210.1

>prot_M-pyrifera_M_contig115487.3210.1 ID=prot_M-pyrifera_M_contig115487.3210.1|Name=mRNA_M-pyrifera_M_contig115487.3210.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
LEKFCRDPKPTEGRFWEADHIIPCAEGGGQSGLLNFRTLCVICHRNATNA
LARRRRQALLQDAASAPGQETLDVVFQKRERKEVK
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mRNA from alignment at M-pyrifera_M_contig115487:310..564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115487.3210.1 ID=mRNA_M-pyrifera_M_contig115487.3210.1|Name=mRNA_M-pyrifera_M_contig115487.3210.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig115487:310..564+ (Macrocystis pyrifera P11B4 male)
TTGGAAAAGTTTTGTCGTGATCCGAAGCCAACGGAAGGTCGATTTTGGGA
AGCTGATCATATTATCCCATGTGCAGAAGGTGGTGGTCAAAGTGGATTGT
TGAATTTTCGAACTTTGTGTGTGATTTGCCACAGAAATGCCACGAATGCT
CTTGCGCGACGGCGAAGACAAGCATTGCTTCAAGATGCAGCATCCGCTCC
AGGGCAAGAAACCCTAGATGTTGTGTTTCAGAAGAGGGAACGGAAGGAAG
TGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115487:310..564+

>mRNA_M-pyrifera_M_contig115487.3210.1 ID=mRNA_M-pyrifera_M_contig115487.3210.1|Name=mRNA_M-pyrifera_M_contig115487.3210.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig115487:310..564+ (Macrocystis pyrifera P11B4 male)
TTGGAAAAGTTTTGTCGTGATCCGAAGCCAACGGAAGGTCGATTTTGGGA
AGCTGATCATATTATCCCATGTGCAGAAGGTGGTGGTCAAAGTGGATTGT
TGAATTTTCGAACTTTGTGTGTGATTTGCCACAGAAATGCCACGAATGCT
CTTGCGCGACGGCGAAGACAAGCATTGCTTCAAGATGCAGCATCCGCTCC
AGGGCAAGAAACCCTAGATGTTGTGTTTCAGAAGAGGGAACGGAAGGAAG
TGAAGTTGGAAAAGTTTTGTCGTGATCCGAAGCCAACGGAAGGTCGATTT
TGGGAAGCTGATCATATTATCCCATGTGCAGAAGGTGGTGGTCAAAGTGG
ATTGTTGAATTTTCGAACTTTGTGTGTGATTTGCCACAGAAATGCCACGA
ATGCTCTTGCGCGACGGCGAAGACAAGCATTGCTTCAAGATGCAGCATCC
GCTCCAGGGCAAGAAACCCTAGATGTTGTGTTTCAGAAGAGGGAACGGAA
GGAAGTGAAG
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