mRNA_M-pyrifera_M_contig101553.320.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101553.320.1
Unique NamemRNA_M-pyrifera_M_contig101553.320.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: A0A2B4S450_STYPI (WD repeat-containing protein 26 n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4S450_STYPI)

HSP 1 Score: 108 bits (269), Expect = 2.310e-25
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAVMT----SISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVS 276
            +P  VM+P HRL TLL QAV  Q   CP HN  +     S SLL DH C  + LP E + IL EHSDEVW ++FSH GTKLAS S DG VI+WD+S
Sbjct:  282 LPASVMLPPHRLRTLLNQAVELQKEKCPYHNTKLELGLHSFSLLSDHLCSRNVLPCETKYILTEHSDEVWFLKFSHDGTKLASGSKDGTVIIWDIS 377
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: A0A6P8IQS3_ACTTE (LOW QUALITY PROTEIN: WD repeat-containing protein 26-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IQS3_ACTTE)

HSP 1 Score: 102 bits (255), Expect = 1.580e-23
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAV----MTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVS 276
            +P  VM+P HRL+TLL QAV +Q  NCP HN +    M S SLL DH C   + P E +  L EH DEVW + FSH G KLA+ + DG +I+WDV+
Sbjct:  191 LPASVMLPPHRLNTLLTQAVERQKENCPFHNTLKDTYMHSFSLLTDHFCTRRQFPCETKYTLTEHCDEVWFVRFSHDGKKLATGAKDGNIIIWDVT 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: UPI0009E4BC78 (WD repeat-containing protein 26-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4BC78)

HSP 1 Score: 100 bits (248), Expect = 1.490e-22
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAVMT----SISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVS 276
            +P  VM+P HRL TLL QAV  Q   CP HN  +     S SLL DH C  +  P E +  L EH DEVW + FSH G+KLA+ + DG VI+WDVS
Sbjct:  191 LPASVMLPPHRLRTLLNQAVELQKEKCPYHNTKLEVGIHSFSLLSDHLCSRNDFPCETKYTLTEHCDEVWFLRFSHSGSKLATGAKDGTVIIWDVS 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: A0A388JSE5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JSE5_CHABU)

HSP 1 Score: 98.6 bits (244), Expect = 5.730e-22
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAVMTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDV 273
            +P  V++PE RL  L+ QA+  Q  NC  HN    ++SLL DH C  + +P E  A+L EH+DEVW ++FSH GT+LA+AS D  VIVW V
Sbjct:  305 LPPSVLIPERRLEALVEQALSVQRENCLFHNTREQTLSLLSDHQCGKNLIPSEATAVLEEHTDEVWYVQFSHDGTRLATASKDSSVIVWQV 395
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: UPI001CF3D287 (WD repeat-containing protein 26-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF3D287)

HSP 1 Score: 98.2 bits (243), Expect = 7.180e-22
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAV----MTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVS 276
            +P  VM+P HRL TLL QA+  Q   CP HN      M ++SLL DH C    +P E +  L +H DEVW + FSH G KLAS S D  VI+WDVS
Sbjct:  191 LPASVMLPPHRLRTLLNQAIELQRERCPYHNTKLEVGMHTLSLLSDHICSGDDIPSETKYTLTDHCDEVWFLRFSHDGLKLASGSRDTTVIIWDVS 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: C4JMB0_UNCRE (CTLH domain-containing protein n=1 Tax=Uncinocarpus reesii (strain UAMH 1704) TaxID=336963 RepID=C4JMB0_UNCRE)

HSP 1 Score: 97.1 bits (240), Expect = 2.020e-21
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAVMTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDV 273
            +   VM+PEHRL+TLL Q    Q+ +C  HN  +T  SL  DH C  S+ PK P   L +H+DEVW +EFSH GTKLA+AS D  VI++DV
Sbjct:  525 ISPSVMIPEHRLATLLHQVKQTQINHCLYHNTAITP-SLYCDHMCDRSRFPKHPTLELSQHTDEVWYLEFSHDGTKLATASRDRSVIIYDV 614
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: UPI00109BB1DD (WD repeat-containing protein 26 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BB1DD)

HSP 1 Score: 96.7 bits (239), Expect = 2.090e-21
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAV----MTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVSE 279
            +P  +M+P HRL TLL QAV  Q   CP HN +    + S SLL DH C   + P E +  L +H DEVW ++FSH G +LA+ + DG +I+WD++E
Sbjct:  191 LPASIMLPPHRLHTLLSQAVELQKEKCPFHNTLKEPDLHSFSLLTDHLCTRKQFPCEAKYTLTDHCDEVWFVKFSHDGKRLATGAKDGNIIIWDMTE 287
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: A0A1S3K288_LINUN (WD repeat-containing protein 26 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K288_LINUN)

HSP 1 Score: 95.5 bits (236), Expect = 6.590e-21
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAV----MTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVSED 282
            +P  VM+P  RL TLL QA+  Q  NCP HN      + ++SLL DH C     P     IL +H DEVW  +FS CGTKLA+ S DG +I+WD++++
Sbjct:  202 LPPTVMLPPRRLQTLLNQAIELQKENCPYHNTKYDNDLEAVSLLMDHICSKEDFPCATLQILNDHCDEVWYCKFSPCGTKLATGSKDGTLIIWDINKE 299
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: A0A7S0INT6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INT6_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 2.330e-20
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAVMTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDV 273
            +P  V++PEHRL TLL+QAVL Q       +A +   SL ED C  +  +P+E   +L +HSDEVW ++FSH G  LASAS D  V+VWDV
Sbjct:  231 IPPSVLLPEHRLQTLLQQAVLWQTNQSMFTHAALCGQSLFEDLCSSADDIPRETVRVLEKHSDEVWFVKFSHNGEMLASASKDRIVVVWDV 321
[Close]
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Match: A0A2S7Q8I5_9HELO (Wd domain-containing protein n=1 Tax=Rutstroemia sp. NJR-2017a BBW TaxID=2070414 RepID=A0A2S7Q8I5_9HELO)

HSP 1 Score: 92.0 bits (227), Expect = 1.070e-19
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 VPGGVMVPEHRLSTLLRQAVLQQVRNCPLHNAVMTSISLLEDHCCVSSKLPKEPRAILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVSE 279
            +   VM+PEHRL+ LL Q    Q+ NC  HN   TS SL +DH C  +  P  P   L +H+ E+W +EFSH G++LAS  +DGCV++++V +
Sbjct:  186 ISPSVMLPEHRLAVLLEQVKRHQISNCIYHNTA-TSPSLYQDHACDRNNFPLRPILELEKHTGEIWVVEFSHDGSRLASCGSDGCVVIYNVPD 277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101553.320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2B4S450_STYPI2.310e-2556.25WD repeat-containing protein 26 n=4 Tax=Pocillopor... [more]
A0A6P8IQS3_ACTTE1.580e-2351.04LOW QUALITY PROTEIN: WD repeat-containing protein ... [more]
UPI0009E4BC781.490e-2251.04WD repeat-containing protein 26-like n=1 Tax=Orbic... [more]
A0A388JSE5_CHABU5.730e-2249.45Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI001CF3D2877.180e-2250.00WD repeat-containing protein 26-like n=2 Tax=Acrop... [more]
C4JMB0_UNCRE2.020e-2151.65CTLH domain-containing protein n=1 Tax=Uncinocarpu... [more]
UPI00109BB1DD2.090e-2145.36WD repeat-containing protein 26 n=1 Tax=Exaiptasia... [more]
A0A1S3K288_LINUN6.590e-2145.92WD repeat-containing protein 26 n=2 Tax=Lingula un... [more]
A0A7S0INT6_9EUKA2.330e-2049.45Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A2S7Q8I5_9HELO1.070e-1944.09Wd domain-containing protein n=1 Tax=Rutstroemia s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101553contigM-pyrifera_M_contig101553:3..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score93.2
Seed ortholog evalue6.7e-17
Seed eggNOG ortholog33188.XP_002544451.1
KEGG koko:K22382
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.WD domain-containing protein
EggNOG OGs20EX7@147545,38D6G@33154,3B0AU@33183,3NX3D@4751,3QM4G@4890,KOG0293@1,KOG0293@2759
COG Functional cat.S
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size288
Cds size273
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.9775681-UTR-M-pyrifera_M_contig101553:2..171622815513.9775681-UTR-M-pyrifera_M_contig101553:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101553 3..17 +
1692277445.3709226-UTR-M-pyrifera_M_contig101553:2..171692277445.3709226-UTR-M-pyrifera_M_contig101553:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101553 3..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.9940042-CDS-M-pyrifera_M_contig101553:17..2901622815513.9940042-CDS-M-pyrifera_M_contig101553:17..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101553 18..290 +
1692277445.3814023-CDS-M-pyrifera_M_contig101553:17..2901692277445.3814023-CDS-M-pyrifera_M_contig101553:17..290Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101553 18..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101553.320.1prot_M-pyrifera_M_contig101553.320.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101553 18..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101553.320.1

>prot_M-pyrifera_M_contig101553.320.1 ID=prot_M-pyrifera_M_contig101553.320.1|Name=mRNA_M-pyrifera_M_contig101553.320.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MVPEHRLSTLLRQAVLQQVRNCPLHNAVMTSISLLEDHCCVSSKLPKEPR
AILGEHSDEVWAIEFSHCGTKLASASTDGCVIVWDVSEDGV
back to top

mRNA from alignment at M-pyrifera_M_contig101553:3..290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101553.320.1 ID=mRNA_M-pyrifera_M_contig101553.320.1|Name=mRNA_M-pyrifera_M_contig101553.320.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig101553:3..290+ (Macrocystis pyrifera P11B4 male)
GTGCCAGGGGGGGTGATGGTGCCGGAGCACCGGCTGAGCACGCTGCTGCG
GCAGGCAGTACTCCAGCAGGTGCGCAACTGTCCGCTCCACAATGCGGTGA
TGACGTCGATCTCTCTGCTGGAGGACCACTGCTGCGTCTCCTCAAAGCTG
CCCAAGGAGCCGCGCGCGATCCTTGGCGAGCACAGCGACGAAGTGTGGGC
CATTGAGTTCTCCCACTGTGGCACCAAGCTGGCCTCCGCCTCCACAGACG
GCTGCGTCATCGTTTGGGACGTCAGCGAAGATGGCGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101553:3..290+

>mRNA_M-pyrifera_M_contig101553.320.1 ID=mRNA_M-pyrifera_M_contig101553.320.1|Name=mRNA_M-pyrifera_M_contig101553.320.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig101553:3..290+ (Macrocystis pyrifera P11B4 male)
ATGGTGCCGGAGCACCGGCTGAGCACGCTGCTGCGGCAGGCAGTACTCCA
GCAGGTGCGCAACTGTCCGCTCCACAATGCGGTGATGACGTCGATCTCTC
TGCTGGAGGACCACTGCTGCGTCTCCTCAAAGCTGCCCAAGGAGCCGCGC
GCGATCCTTGGCGAGCACAGCGACGAAGTGTGGGCCATTGAGTTCTCCCA
CTGTGGCACCAAGCTGGCCTCCGCCTCCACAGACGGCTGCGTCATCGTTT
GGGACGTCAGCGAAGATGGCGTAATGGTGCCGGAGCACCGGCTGAGCACG
CTGCTGCGGCAGGCAGTACTCCAGCAGGTGCGCAACTGTCCGCTCCACAA
TGCGGTGATGACGTCGATCTCTCTGCTGGAGGACCACTGCTGCGTCTCCT
CAAAGCTGCCCAAGGAGCCGCGCGCGATCCTTGGCGAGCACAGCGACGAA
GTGTGGGCCATTGAGTTCTCCCACTGTGGCACCAAGCTGGCCTCCGCCTC
CACAGACGGCTGCGTCATCGTTTGGGACGTCAGCGAAGATGGCGTA
back to top