mRNA_M-pyrifera_M_contig115340.3194.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115340.3194.1
Unique NamemRNA_M-pyrifera_M_contig115340.3194.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A427B485_ENSVE (AMP-binding domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427B485_ENSVE)

HSP 1 Score: 90.9 bits (224), Expect = 1.300e-20
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVDA-VRKGAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            ST+AELF +AC++    P+ GTR++   +  V +  +  ++  LGD+EW+++ +AF   C+  +GL HLG     RVAI ++T AEW +   GCF++  TV T YASL
Sbjct:   58 STLAELFEQACKRFTYKPSLGTRKLITREMEVSQNGRSFEKLHLGDYEWVSYGEAFKAVCSFSSGLVHLGHKKDERVAIFSDTRAEWFIALQGCFRQNITVVTIYASL 165
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BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A804L6C9_MUSAM (AMP-binding domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A804L6C9_MUSAM)

HSP 1 Score: 90.9 bits (224), Expect = 5.120e-19
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVDA-VRKGAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            ST+AELF +AC++    P+ GTR++   +  V +  +  ++  LGD+EW+++ +AF   C+  +GL HLG     RVAI ++T AEW +   GCF++  TV T YASL
Sbjct:   58 STLAELFEQACKRFTYKPSLGTRKLITREMEVSQNGRSFEKLHLGDYEWVSYGEAFKAVCSFSSGLVHLGHKKDERVAIFSDTRAEWFIALQGCFRQNITVVTIYASL 165
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BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: UPI000C6D0397 (long-chain-fatty-acid--CoA ligase 4-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D0397)

HSP 1 Score: 88.2 bits (217), Expect = 1.140e-18
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    1 TMLCSTMAELFREACEKGGGSPAYGTRRIEGVDAV-RKGAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            T LC T+ ELFR+  E  G     G+R I  V+   R+  K  ++  LGD++W+T R+A  R   +  GLR +GL PG RV I A T  EW L +H CF+ G  VAT Y +L
Sbjct:   70 TELC-TLDELFRKCVENHGDKKMLGSREILNVERTKREDGKIFKKMILGDYKWLTLREADRRVNDLALGLRKIGLNPGDRVVILAETRIEWLLISHACFRTGIVVATCYTNL 180
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BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A1U7Z1V9_NELNU (long chain acyl-CoA synthetase 8 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7Z1V9_NELNU)

HSP 1 Score: 89.7 bits (221), Expect = 1.310e-18
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVDAVRKG-AKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            +TMA LF ++C+K       GTR++ G + +     +  ++  LGD+EWIT+ +AF RAC   +GL  LG  P S  AI + T AEW L   GCF++  T+ T YASL
Sbjct:   87 TTMAALFEQSCKKNARDRFLGTRKLIGKELITANDGRKFEKLHLGDYEWITYGEAFDRACNFASGLVKLGHSPESPAAIFSETRAEWLLAFQGCFRQNITIVTIYASL 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A1D6QLG8_MAIZE (Long chain acyl-CoA synthetase 9 chloroplastic n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6QLG8_MAIZE)

HSP 1 Score: 85.1 bits (209), Expect = 3.320e-18
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVD-AVRKGAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            ST+AELF ++C++   +P +GTR++   +  V    +  ++  LG++EW ++ DAF   C   +GL  +G L   RVAI A+T AEW +    CF++   V T YASL
Sbjct:   58 STLAELFEQSCKQFASTPLFGTRKLIAREMVVAADGRSFEKLHLGNYEWRSYADAFKTVCNFASGLLRIGHLKDERVAIFADTRAEWQIALQACFRQNIAVVTIYASL 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: UPI000C6EC20B (long-chain-fatty-acid--CoA ligase 4-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6EC20B)

HSP 1 Score: 88.2 bits (217), Expect = 4.540e-18
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    1 TMLCSTMAELFREACEKGGGSPAYGTRRIEGVDAV-RKGAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            T LC T+ ELFR+  E  G     G+R I  V+   R+  K  ++  LGD++W+T R+A  R   +  GLR +GL PG RV I A T  EW L +H CF+ G  VAT Y +L
Sbjct:   70 TELC-TLDELFRKCVENHGDKKMLGSREILNVERTKREDGKIFKKMILGDYKWLTLREADRRVNDLALGLRKIGLNPGDRVVILAETRIEWLLISHACFRTGIVVATCYTNL 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A834WD52_9FABA (Long chain acyl-CoA synthetase 8 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WD52_9FABA)

HSP 1 Score: 87.0 bits (214), Expect = 1.150e-17
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVDAVRK-GAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            +TMA LF ++C+K   +   GTR+I G + V     +  ++  LGD+EW+++ DAF+R     +GL  LG    S VAI ++T AEW +   GCF++  TV T YASL
Sbjct:   91 TTMAHLFEQSCKKNSKNQFLGTRKIIGKELVSSTDGRQFEKLHLGDYEWLSYEDAFARVSNFASGLLKLGHNRDSHVAIFSDTRAEWLIALQGCFRQNITVVTIYASL 198
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BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A2K2AI92_POPTR (AMP-binding domain-containing protein n=7 Tax=Saliceae TaxID=238069 RepID=A0A2K2AI92_POPTR)

HSP 1 Score: 85.9 bits (211), Expect = 2.920e-17
Identity = 44/108 (40.74%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVDA-VRKGAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            ST+A+LF  AC+K G     GTR +   D  V    +  ++  LG++EW+T+     + C   +GL HLGL    RVAI A+T AEW +   GCF+   +V T YASL
Sbjct:   58 STLAQLFEMACKKHGHKCLLGTRTLISKDTEVSANGRSFEKLHLGEYEWLTYGQVLEKVCNFASGLAHLGLRSEERVAIFADTRAEWFISLQGCFRRNVSVVTIYASL 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A8B8QK55_9MYRT (long chain acyl-CoA synthetase 8 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QK55_9MYRT)

HSP 1 Score: 85.9 bits (211), Expect = 2.930e-17
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVDAVRKG-AKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            +TMA LF ++C+K       GTR++   + V  G  +  ++  LGD+EWIT+R+A  RAC   +GL  LG    SR AI A+T AEW +   G F++  TV T YASL
Sbjct:   77 TTMAALFEQSCKKHAQQRFLGTRKLISKEIVTAGDGRKFEKVHLGDYEWITYREALDRACNFASGLVRLGHNVDSRAAIFADTRAEWFIAFQGFFRQDITVVTIYASL 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Match: A0A1D6QLG9_MAIZE (Long chain acyl-CoA synthetase 9 chloroplastic n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6QLG9_MAIZE)

HSP 1 Score: 85.1 bits (209), Expect = 3.630e-17
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:   13 STMAELFREACEKGGGSPAYGTRRIEGVD-AVRKGAKWIQRATLGDFEWITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEGFTVATAYASL 333
            ST+AELF ++C++   +P +GTR++   +  V    +  ++  LG++EW ++ DAF   C   +GL  +G L   RVAI A+T AEW +    CF++   V T YASL
Sbjct:   58 STLAELFEQSCKQFASTPLFGTRKLIAREMVVAADGRSFEKLHLGNYEWRSYADAFKTVCNFASGLLRIGHLKDERVAIFADTRAEWQIALQACFRQNIAVVTIYASL 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115340.3194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A427B485_ENSVE1.300e-2040.74AMP-binding domain-containing protein n=2 Tax=Ense... [more]
A0A804L6C9_MUSAM5.120e-1940.74AMP-binding domain-containing protein n=3 Tax=Musa... [more]
UPI000C6D03971.140e-1842.86long-chain-fatty-acid--CoA ligase 4-like isoform X... [more]
A0A1U7Z1V9_NELNU1.310e-1841.67long chain acyl-CoA synthetase 8 n=2 Tax=Nelumbo n... [more]
A0A1D6QLG8_MAIZE3.320e-1837.96Long chain acyl-CoA synthetase 9 chloroplastic n=1... [more]
UPI000C6EC20B4.540e-1842.86long-chain-fatty-acid--CoA ligase 4-like n=1 Tax=C... [more]
A0A834WD52_9FABA1.150e-1740.74Long chain acyl-CoA synthetase 8 n=1 Tax=Senna tor... [more]
A0A2K2AI92_POPTR2.920e-1740.74AMP-binding domain-containing protein n=7 Tax=Sali... [more]
A0A8B8QK55_9MYRT2.930e-1742.59long chain acyl-CoA synthetase 8 n=1 Tax=Rhodamnia... [more]
A0A1D6QLG9_MAIZE3.630e-1737.96Long chain acyl-CoA synthetase 9 chloroplastic n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115340contigM-pyrifera_M_contig115340:233..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.4
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog4641.GSMUA_Achr11P11940_001
Preferred nameLACS9
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
GOsGO:0001676,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015645,GO:0016020,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0031967,GO:0031975,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704
EggNOG free text desc.AMP-binding enzyme
EggNOG OGs37KCQ@33090,3G9YS@35493,3KTXX@4447,COG1022@1,KOG1180@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Exons1
Model size333
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.7625418-UTR-M-pyrifera_M_contig115340:232..2351622815669.7625418-UTR-M-pyrifera_M_contig115340:232..235Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115340 233..235 +
1692277513.7302802-UTR-M-pyrifera_M_contig115340:232..2351692277513.7302802-UTR-M-pyrifera_M_contig115340:232..235Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115340 233..235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.7729971-CDS-M-pyrifera_M_contig115340:235..5651622815669.7729971-CDS-M-pyrifera_M_contig115340:235..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115340 236..565 +
1692277513.7410119-CDS-M-pyrifera_M_contig115340:235..5651692277513.7410119-CDS-M-pyrifera_M_contig115340:235..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115340 236..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115340.3194.1prot_M-pyrifera_M_contig115340.3194.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115340 236..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115340.3194.1

>prot_M-pyrifera_M_contig115340.3194.1 ID=prot_M-pyrifera_M_contig115340.3194.1|Name=mRNA_M-pyrifera_M_contig115340.3194.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MLCSTMAELFREACEKGGGSPAYGTRRIEGVDAVRKGAKWIQRATLGDFE
WITFRDAFSRACAIGAGLRHLGLLPGSRVAINANTSAEWTLCAHGCFQEG
FTVATAYASL
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mRNA from alignment at M-pyrifera_M_contig115340:233..565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115340.3194.1 ID=mRNA_M-pyrifera_M_contig115340.3194.1|Name=mRNA_M-pyrifera_M_contig115340.3194.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig115340:233..565+ (Macrocystis pyrifera P11B4 male)
ACGATGCTTTGCTCGACGATGGCCGAATTGTTTCGTGAAGCATGTGAGAA
GGGTGGAGGGAGCCCAGCATACGGAACTCGTCGTATCGAAGGTGTAGATG
CGGTGCGGAAAGGTGCAAAGTGGATCCAGCGTGCAACTTTGGGTGATTTT
GAATGGATTACGTTTCGTGATGCGTTTTCTCGTGCCTGTGCTATTGGCGC
TGGTCTTCGACACCTTGGCCTGCTCCCTGGATCTCGTGTCGCCATCAACG
CGAACACGAGTGCAGAATGGACGCTTTGTGCGCACGGTTGCTTCCAGGAA
GGCTTCACGGTTGCAACCGCGTATGCGAGCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115340:233..565+

>mRNA_M-pyrifera_M_contig115340.3194.1 ID=mRNA_M-pyrifera_M_contig115340.3194.1|Name=mRNA_M-pyrifera_M_contig115340.3194.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig115340:233..565+ (Macrocystis pyrifera P11B4 male)
ATGCTTTGCTCGACGATGGCCGAATTGTTTCGTGAAGCATGTGAGAAGGG
TGGAGGGAGCCCAGCATACGGAACTCGTCGTATCGAAGGTGTAGATGCGG
TGCGGAAAGGTGCAAAGTGGATCCAGCGTGCAACTTTGGGTGATTTTGAA
TGGATTACGTTTCGTGATGCGTTTTCTCGTGCCTGTGCTATTGGCGCTGG
TCTTCGACACCTTGGCCTGCTCCCTGGATCTCGTGTCGCCATCAACGCGA
ACACGAGTGCAGAATGGACGCTTTGTGCGCACGGTTGCTTCCAGGAAGGC
TTCACGGTTGCAACCGCGTATGCGAGCTTGATGCTTTGCTCGACGATGGC
CGAATTGTTTCGTGAAGCATGTGAGAAGGGTGGAGGGAGCCCAGCATACG
GAACTCGTCGTATCGAAGGTGTAGATGCGGTGCGGAAAGGTGCAAAGTGG
ATCCAGCGTGCAACTTTGGGTGATTTTGAATGGATTACGTTTCGTGATGC
GTTTTCTCGTGCCTGTGCTATTGGCGCTGGTCTTCGACACCTTGGCCTGC
TCCCTGGATCTCGTGTCGCCATCAACGCGAACACGAGTGCAGAATGGACG
CTTTGTGCGCACGGTTGCTTCCAGGAAGGCTTCACGGTTGCAACCGCGTA
TGCGAGCTTG
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