mRNA_M-pyrifera_M_contig101543.318.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101543.318.1
Unique NamemRNA_M-pyrifera_M_contig101543.318.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101543.318.1 vs. uniprot
Match: A0A7Y2IIA4_9ACTN (YbhB/YbcL family Raf kinase inhibitor-like protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IIA4_9ACTN)

HSP 1 Score: 145 bits (365), Expect = 1.690e-41
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    4 PTDTAQGAVRLTDQTDPENPLLLWLVGGIEPTVGQLVPGDL-GLADETLNDYGQLGYGNPCIETLSAGRRDLQFRIYSLAQSSGIEPGAPGNESWDRVAAMANDSATLLMQVDAN 345
            P  TA+  + L+DQTDPENPLLLWL+ G+ P  G+L+ GDL G + ETLNDYGQ G+GNPC+E+   GRRDLQFR+Y+L + S I PGAPGN +WD +AA + DSAT+LM++ +N
Sbjct:   95 PEGTAELGITLSDQTDPENPLLLWLMAGLNPAAGELLQGDLPGGSFETLNDYGQPGWGNPCLESFQNGRRDLQFRLYALDRPSEIAPGAPGNTAWDELAARSVDSATVLMRITSN 209
[Close]
BLAST of mRNA_M-pyrifera_M_contig101543.318.1 vs. uniprot
Match: A0A7Y2GS69_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GS69_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 6.630e-41
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:    4 PTDTAQGAVRLTDQTDPENPLLLWLVGGIEPTVGQLVPGDLGL-ADETLNDYGQLGYGNPCIETLSAGRRDLQFRIYSLAQSSGIEPGAPGNESWDRVAAMANDSATLLMQVDAN 345
            P    +  + L+DQTDPENPLLLWL+ G++P  G L  GDL   A ETLNDYGQ G+GNPC+E+   GRRDLQFR+Y+L + S I PGAPGN SWD +AA A DSAT+LM++ A+
Sbjct:   91 PESAVELGITLSDQTDPENPLLLWLMAGLDPDAGGLTQGDLPAGAFETLNDYGQPGWGNPCLESFQTGRRDLQFRLYALDRPSNISPGAPGNTSWDELAARAIDSATILMRITAD 205
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101543.318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y2IIA4_9ACTN1.690e-4159.13YbhB/YbcL family Raf kinase inhibitor-like protein... [more]
A0A7Y2GS69_9ACTN6.630e-4159.13Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101543contigM-pyrifera_M_contig101543:319..669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.8578491-CDS-M-pyrifera_M_contig101543:318..6691622815513.8578491-CDS-M-pyrifera_M_contig101543:318..669Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101543 319..669 -
1692277445.3271031-CDS-M-pyrifera_M_contig101543:318..6691692277445.3271031-CDS-M-pyrifera_M_contig101543:318..669Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101543 319..669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101543.318.1prot_M-pyrifera_M_contig101543.318.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101543 319..669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101543.318.1

>prot_M-pyrifera_M_contig101543.318.1 ID=prot_M-pyrifera_M_contig101543.318.1|Name=mRNA_M-pyrifera_M_contig101543.318.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
APTDTAQGAVRLTDQTDPENPLLLWLVGGIEPTVGQLVPGDLGLADETLN
DYGQLGYGNPCIETLSAGRRDLQFRIYSLAQSSGIEPGAPGNESWDRVAA
MANDSATLLMQVDANP*
back to top

mRNA from alignment at M-pyrifera_M_contig101543:319..669-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101543.318.1 ID=mRNA_M-pyrifera_M_contig101543.318.1|Name=mRNA_M-pyrifera_M_contig101543.318.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig101543:319..669- (Macrocystis pyrifera P11B4 male)
GCCCCGACCGACACCGCCCAGGGGGCCGTCCGCCTCACCGATCAGACCGA
CCCGGAGAACCCGCTCCTGCTCTGGCTGGTCGGCGGGATCGAACCCACAG
TCGGACAACTGGTGCCCGGCGACCTCGGCCTCGCCGACGAGACGCTGAAC
GACTACGGGCAACTGGGCTACGGCAATCCATGCATCGAGACCCTGTCGGC
CGGCCGCCGAGACCTCCAGTTCCGGATCTACTCGCTGGCCCAGTCCTCGG
GCATCGAACCGGGAGCTCCCGGCAACGAGTCGTGGGATCGAGTCGCCGCC
ATGGCCAACGACTCCGCCACCCTCTTGATGCAGGTCGACGCCAACCCCTG
A
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101543:319..669-

>mRNA_M-pyrifera_M_contig101543.318.1 ID=mRNA_M-pyrifera_M_contig101543.318.1|Name=mRNA_M-pyrifera_M_contig101543.318.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig101543:319..669- (Macrocystis pyrifera P11B4 male)
GCCCCGACCGACACCGCCCAGGGGGCCGTCCGCCTCACCGATCAGACCGA
CCCGGAGAACCCGCTCCTGCTCTGGCTGGTCGGCGGGATCGAACCCACAG
TCGGACAACTGGTGCCCGGCGACCTCGGCCTCGCCGACGAGACGCTGAAC
GACTACGGGCAACTGGGCTACGGCAATCCATGCATCGAGACCCTGTCGGC
CGGCCGCCGAGACCTCCAGTTCCGGATCTACTCGCTGGCCCAGTCCTCGG
GCATCGAACCGGGAGCTCCCGGCAACGAGTCGTGGGATCGAGTCGCCGCC
ATGGCCAACGACTCCGCCACCCTCTTGATGCAGGTCGACGCCAACCCCTG
AGCCCCGACCGACACCGCCCAGGGGGCCGTCCGCCTCACCGATCAGACCG
ACCCGGAGAACCCGCTCCTGCTCTGGCTGGTCGGCGGGATCGAACCCACA
GTCGGACAACTGGTGCCCGGCGACCTCGGCCTCGCCGACGAGACGCTGAA
CGACTACGGGCAACTGGGCTACGGCAATCCATGCATCGAGACCCTGTCGG
CCGGCCGCCGAGACCTCCAGTTCCGGATCTACTCGCTGGCCCAGTCCTCG
GGCATCGAACCGGGAGCTCCCGGCAACGAGTCGTGGGATCGAGTCGCCGC
CATGGCCAACGACTCCGCCACCCTCTTGATGCAGGTCGACGCCAACCCCT
GA
back to top