mRNA_M-pyrifera_M_contig11522.3167.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11522.3167.1
Unique NamemRNA_M-pyrifera_M_contig11522.3167.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11522.3167.1 vs. uniprot
Match: A0A420TEG6_GIBIN (Uncharacterized protein n=2 Tax=Gibberella intermedia TaxID=948311 RepID=A0A420TEG6_GIBIN)

HSP 1 Score: 50.1 bits (118), Expect = 1.330e-5
Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = 1 
Query:   25 VQAVDYDGNTPLIWAAREGHRECVNILLDNEASTMTPDE 141
            V+  D DG TPL+WAAREGH   V  LLD+ A T   DE
Sbjct:  398 VELADTDGQTPLLWAAREGHEGAVKFLLDHGARTEAKDE 436
[Close]
BLAST of mRNA_M-pyrifera_M_contig11522.3167.1 vs. uniprot
Match: A0A833TID5_PHYIN (FYVE zinc finger domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TID5_PHYIN)

HSP 1 Score: 48.1 bits (113), Expect = 6.400e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   52 TPLIWAAREGHRECVNILLDNEASTMTPDENGNTALHF 165
            TPL  A+R+GH E V +LL + A++  PDE GNTALH+
Sbjct:  408 TPLHVASRKGHSEVVELLLQHNAASNLPDEEGNTALHY 445
[Close]
BLAST of mRNA_M-pyrifera_M_contig11522.3167.1 vs. uniprot
Match: UPI001EE554E0 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like isoform X1 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE554E0)

HSP 1 Score: 47.8 bits (112), Expect = 8.570e-5
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   46 GNTPLIWAAREGHRECVNILLDNEASTMTPDENGNTALHF 165
            G TP++WAAR GHRE V++L+   AS +  D+ GN  LH+
Sbjct:   46 GMTPVMWAARRGHRELVDLLVKKGASLILVDDAGNNILHW 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig11522.3167.1 vs. uniprot
Match: E9AJT1_LEIMU (DHHC domain-containing protein n=9 Tax=Leishmania TaxID=38568 RepID=E9AJT1_LEIMU)

HSP 1 Score: 47.8 bits (112), Expect = 8.780e-5
Identity = 23/45 (51.11%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:   25 VQAVDYDGNTPLIWAAREGHRECVNILLDNEASTMTPDENGNTAL 159
            V A D  G TPL+WAAREG  E + +LL   A    PD +G TAL
Sbjct:  276 VDAQDSHGRTPLVWAAREGFSEVMELLLSRGADRHIPDSDGWTAL 320
[Close]
BLAST of mRNA_M-pyrifera_M_contig11522.3167.1 vs. uniprot
Match: A0A2P6NMQ1_9EUKA (HECT domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NMQ1_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 8.790e-5
Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:   16 RSPVQAVDYDGNTPLIWAAREGHRECVNILLDNEASTMTPDENGNTALHFS 168
            R  V   + DG TPL+ AA+ GH+  + +LL+N A     DE G+T LH+S
Sbjct:  270 RQIVDEAENDGVTPLMIAAQNGHKNIIQLLLNNGADLDLVDEEGSTVLHYS 320
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11522.3167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A420TEG6_GIBIN1.330e-556.41Uncharacterized protein n=2 Tax=Gibberella interme... [more]
A0A833TID5_PHYIN6.400e-555.26FYVE zinc finger domain-containing protein n=2 Tax... [more]
UPI001EE554E08.570e-550.00serine/threonine-protein phosphatase 6 regulatory ... [more]
E9AJT1_LEIMU8.780e-551.11DHHC domain-containing protein n=9 Tax=Leishmania ... [more]
A0A2P6NMQ1_9EUKA8.790e-543.14HECT domain-containing protein n=1 Tax=Planoprotos... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11522contigM-pyrifera_M_contig11522:116..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.3614523-CDS-M-pyrifera_M_contig11522:115..2831622815668.3614523-CDS-M-pyrifera_M_contig11522:115..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11522 116..283 -
1692277513.062041-CDS-M-pyrifera_M_contig11522:115..2831692277513.062041-CDS-M-pyrifera_M_contig11522:115..283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11522 116..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11522.3167.1prot_M-pyrifera_M_contig11522.3167.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11522 116..283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11522.3167.1

>prot_M-pyrifera_M_contig11522.3167.1 ID=prot_M-pyrifera_M_contig11522.3167.1|Name=mRNA_M-pyrifera_M_contig11522.3167.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MVHGDRSPVQAVDYDGNTPLIWAAREGHRECVNILLDNEASTMTPDENGN
TALHFS
back to top

mRNA from alignment at M-pyrifera_M_contig11522:116..283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11522.3167.1 ID=mRNA_M-pyrifera_M_contig11522.3167.1|Name=mRNA_M-pyrifera_M_contig11522.3167.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig11522:116..283- (Macrocystis pyrifera P11B4 male)
ATGGTACACGGCGATCGATCGCCGGTGCAGGCGGTGGATTACGACGGCAA
CACCCCCCTCATCTGGGCAGCGCGCGAGGGCCACCGTGAGTGTGTCAACA
TCCTCCTTGACAACGAGGCGTCGACCATGACCCCGGATGAGAATGGAAAT
ACGGCGCTTCACTTTTCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11522:116..283-

>mRNA_M-pyrifera_M_contig11522.3167.1 ID=mRNA_M-pyrifera_M_contig11522.3167.1|Name=mRNA_M-pyrifera_M_contig11522.3167.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig11522:116..283- (Macrocystis pyrifera P11B4 male)
ATGGTACACGGCGATCGATCGCCGGTGCAGGCGGTGGATTACGACGGCAA
CACCCCCCTCATCTGGGCAGCGCGCGAGGGCCACCGTGAGTGTGTCAACA
TCCTCCTTGACAACGAGGCGTCGACCATGACCCCGGATGAGAATGGAAAT
ACGGCGCTTCACTTTTCGATGGTACACGGCGATCGATCGCCGGTGCAGGC
GGTGGATTACGACGGCAACACCCCCCTCATCTGGGCAGCGCGCGAGGGCC
ACCGTGAGTGTGTCAACATCCTCCTTGACAACGAGGCGTCGACCATGACC
CCGGATGAGAATGGAAATACGGCGCTTCACTTTTCG
back to top