mRNA_M-pyrifera_M_contig10151.316.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10151.316.1
Unique NamemRNA_M-pyrifera_M_contig10151.316.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: D7G9E6_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E6_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 5.310e-39
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:    1 TNRQIKAVSEALDKHYDFDRYSRSRGHDRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSERKITRPRTPPPXXXXXXPNLRHRSSLRCPPRLAKQQDSDS 366
            T  QI+A+S+AL+ H+D DR++RSRGH+RHRDEHTDV SL  SV GKTPSQVLSFYYRYMA+GDALT++MG  E Q K RSER+    R PP       PNLRHR SLRCP RL      DS
Sbjct:  432 TGPQIEALSKALETHFDADRFTRSRGHERHRDEHTDVTSLIASVDGKTPSQVLSFYYRYMATGDALTEVMGSAEAQAKVRSERRSASLRGPPAPRPSPPPNLRHRPSLRCPTRLQASSFEDS 553
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BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: A0A6H5K2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H5_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.360e-37
Identity = 76/122 (62.30%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:    1 TNRQIKAVSEALDKHYDFDRYSRSRGHDRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSERKITRPRTPPPXXXXXXPNLRHRSSLRCPPRLAKQQDSDS 366
            T  QI+A+S+AL+ ++D DR++RSRGH+RHRDEHTDV SL  SV GKTPSQVLSFYYRYMA+GDALT++MG  E Q K RSER+    R PP       PNLRHR SLRCP RL      DS
Sbjct:  583 TGPQIEALSKALEANFDPDRFTRSRGHERHRDEHTDVTSLIASVDGKTPSQVLSFYYRYMATGDALTEVMGSAEAQAKVRSERRSASLRGPPVPRPSPPPNLRHRPSLRCPTRLQASSFEDS 704
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BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.240e-9
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   10 QIKAVSEALDKHYDFDRYSRSRGH-----DRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSER 249
            Q++ +  ALDK  DFD   RS+G      D  R++  D+A +S+ VPGKTP+QVL FY+RY+A+   LTD++ G E    ++ E+
Sbjct:  665 QVRTLEAALDK--DFDVNGRSQGWARPGIDMDREDFIDIAKVSKEVPGKTPAQVLQFYFRYLAAARPLTDVVYGPEAAEARKREK 747
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BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.240e-9
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   10 QIKAVSEALDKHYDFDRYSRS---RGHDRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSE 246
            Q++ + +AL++H+D +  S      G D  R++  D+A++S+ VPGKTP+QVLSF+YRY+A+   LTD++ G E    ++ E
Sbjct:  679 QVRNLKQALEEHFDPNPRSHGWAREGMDLEREDFIDLANVSKQVPGKTPTQVLSFFYRYLAAAKPLTDVVYGKEAAEARKLE 760
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BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: D7G9E4_ECTSI (BAH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E4_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.280e-9
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   10 QIKAVSEALDKHYDFDRYSRSRGH-----DRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSER 249
            Q++ +  ALDK  DFD   RS+G      D  R++  D+A +S+ VPGKTP+QVL FY+RY+A+   LTD++ G E    ++ E+
Sbjct:  559 QVRTLEAALDK--DFDVNGRSQGWARPGIDMDREDCIDIAKVSKEVPGKTPAQVLQFYFRYLAAARPLTDVVYGPEAAEARKREK 641
[Close]
BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 6.800e-8
Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 TNRQIKAVSEALDKHYDFDRYSRS---RGHDRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSE 246
            T +Q++ + +AL K Y+ DR        G D  R++  D+A +S+ V GK+P+QVL F+YRY+A+ + LTD++ G E    ++ E
Sbjct:  472 TLQQVRTLEQALAKDYNRDRRLHGWAREGMDMDREDFIDLADVSKQVSGKSPTQVLCFFYRYLATAEPLTDVVYGEEAAEARKRE 556
[Close]
BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.220e-7
Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   10 QIKAVSEALDKHYDFDRYSRS---RGHDRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSE 246
            Q++ + + L+K + +DR        G D  +++  D+A++ + V GKTP+QVLSFYYRY+A    LTD++ G E    ++ E
Sbjct:  676 QVRTLEQVLEKEFKWDRRLHGWAREGMDLEQEDFIDLANVCKQVRGKTPAQVLSFYYRYLAHAKPLTDVVYGKEAAEARKLE 757
[Close]
BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.790e-6
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 TNRQIKAVSEALDKHYDFDRYSRS---RGHDRHRDEHTDVASLSQSVPGKTPSQVLSFYYRYMASGDALTDIMGGVETQVKKRSE 246
            T +Q++ + +AL K  + DR        G D  R++  D+A + + +PGK+P+QVL F+YRY+A+ + LTD++ G E    ++ E
Sbjct:  674 TLQQVRTLEQALAKDCNRDRRLHGWAREGMDIDREDLIDLADVIKQIPGKSPTQVLCFFYRYLATAEPLTDVVYGEEAAEARKRE 758
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10151.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G9E6_ECTSI5.310e-3963.11ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K2H5_9PHAE2.360e-3762.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0T4_9PHAE1.240e-942.35BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLS8_9PHAE1.240e-940.24ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G9E4_ECTSI2.280e-942.35BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E3_ECTSI6.800e-837.65ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVI2_9PHAE3.220e-736.59ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JX23_9PHAE2.790e-635.29BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10151contigM-pyrifera_M_contig10151:8770..10169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size426
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10151.316.1prot_M-pyrifera_M_contig10151.316.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10151 8770..10169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.1431446-CDS-M-pyrifera_M_contig10151:8769..89731622815513.1431446-CDS-M-pyrifera_M_contig10151:8769..8973Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10151 8770..8973 -
1692277445.218011-CDS-M-pyrifera_M_contig10151:8769..89731692277445.218011-CDS-M-pyrifera_M_contig10151:8769..8973Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10151 8770..8973 -
1622815513.156714-CDS-M-pyrifera_M_contig10151:9310..93791622815513.156714-CDS-M-pyrifera_M_contig10151:9310..9379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10151 9311..9379 -
1692277445.22785-CDS-M-pyrifera_M_contig10151:9310..93791692277445.22785-CDS-M-pyrifera_M_contig10151:9310..9379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10151 9311..9379 -
1622815513.1710052-CDS-M-pyrifera_M_contig10151:10016..101691622815513.1710052-CDS-M-pyrifera_M_contig10151:10016..10169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10151 10017..10169 -
1692277445.2396536-CDS-M-pyrifera_M_contig10151:10016..101691692277445.2396536-CDS-M-pyrifera_M_contig10151:10016..10169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10151 10017..10169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10151.316.1

>prot_M-pyrifera_M_contig10151.316.1 ID=prot_M-pyrifera_M_contig10151.316.1|Name=mRNA_M-pyrifera_M_contig10151.316.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
TNRQIKAVSEALDKHYDFDRYSRSRGHDRHRDEHTDVASLSQSVPGKTPS
QVLSFYYRYMASGDALTDIMGGVETQVKKRSERKITRPRTPPPPRPSPPP
NLRHRSSLRCPPRLAKQQDSDSSNGGSSRLPGRRAHGSERAG
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mRNA from alignment at M-pyrifera_M_contig10151:8770..10169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10151.316.1 ID=mRNA_M-pyrifera_M_contig10151.316.1|Name=mRNA_M-pyrifera_M_contig10151.316.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1400bp|location=Sequence derived from alignment at M-pyrifera_M_contig10151:8770..10169- (Macrocystis pyrifera P11B4 male)
ACAAATCGCCAGATCAAGGCTGTCTCAGAAGCTCTCGACAAACACTACGA
CTTCGATCGCTATTCTCGATCTAGAGGGCACGACCGGCATCGGGATGAGC
ACACGGACGTCGCATCTCTGAGCCAGTCTGTCCCGGGAAAAACGCCATCC
CAGGTGATTCGATATTTGGTGCCCACGTGGCAGTCCACACCAAGCGGGGT
TATACTGCTCTTGCTATTATGATAATGTCGGTAGTATGCTTGCTGGACGC
CCGTTTCTTCTACAGCCAACGCTTCGCGAGAGCTGCCGCGTCGATGATCA
TGGTGCGGTGGTATTCTCATAGAGCGTCGAGAGAATGTCATGGTGCGTCG
TAGTCGACCTACTATCAAAGGGCACCACTTTGTCAACCACTTTGTTCAGC
TTTAGTTCGATTTTTGTTTCCGCCTCGACCACTCCGTCGGGCCTACTGCC
CTCGGTGCTATCCCTGTCCGGGAAGTTTCTTTCAAGCGCTACTAACTTGG
TGCTGCATCTGGACGAATTCATTTTGTTTATATTTAGCCACAACGCTTTT
CTGTAGTTTTTCCCTCTTTTTTTTTTCTCGTACGTACGACGTGTTCACAA
TACGTAGCACTTGAAAACCTTTGAACAAATTCTACCGCATTACTTCAATT
TGTCGACCCGGTCTCCCTTCATGGGTCAGAAATGACATGTGGTTCCACCT
TCGTTATGTATCTTGTAGCTCGTAACCCGCGTTCCCCCCTCCCCCTACAC
ACGGCACATTGCCCCTCCTGGTACCCTCGGTTCGCTGAAGGTGTTGTCTT
TCTACTACAGGTACATGGCATCGGGCGACGCTCTTACGGACATCATGGGT
GGCGTCGAGGTAACGTCGGTCTCTGTGCCGTGTGTACGCGTTTTTGCGGC
TCAAAAGTTCCGCAGAAATTCAGTTCGCTCGGTACGCTTGTCGCTGAGCT
CTGAAATTCCTGTTTTGACGCTGATAGTAAACCAAGGGAGACCTCTTGTC
TTGCCCTCGTGTTGTCCCTACGCCATCGCCACTTCCATTGTCGTCTCGCC
ACTAATTACATCGCCCTCTCTGAGCGCGTGCTCAGCACCGCGCTTCTGAC
GCTTTCTTATTATTATATTGCAGTCCTCTAACGAGTATTAGCTCACGAGT
TGATACACCCTTTCATCCTTGCCGTCTGACATCTGCCGTCAACCAGACGC
AGGTAAAGAAACGGAGTGAGAGGAAGATCACCCGCCCCAGGACTCCGCCC
CCCCCGCGCCCGAGCCCGCCCCCGAACCTCAGGCACCGGTCGTCCCTCCG
GTGCCCTCCGCGGCTGGCGAAGCAGCAAGACTCCGACAGCAGTAACGGCG
GCTCATCTCGACTTCCTGGCAGACGGGCGCACGGGAGCGAGCGTGCGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10151:8770..10169-

>mRNA_M-pyrifera_M_contig10151.316.1 ID=mRNA_M-pyrifera_M_contig10151.316.1|Name=mRNA_M-pyrifera_M_contig10151.316.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig10151:8770..10169- (Macrocystis pyrifera P11B4 male)
ACAAATCGCCAGATCAAGGCTGTCTCAGAAGCTCTCGACAAACACTACGA
CTTCGATCGCTATTCTCGATCTAGAGGGCACGACCGGCATCGGGATGAGC
ACACGGACGTCGCATCTCTGAGCCAGTCTGTCCCGGGAAAAACGCCATCC
CAGACAAATCGCCAGATCAAGGCTGTCTCAGAAGCTCTCGACAAACACTA
CGACTTCGATCGCTATTCTCGATCTAGAGGGCACGACCGGCATCGGGATG
AGCACACGGACGTCGCATCTCTGAGCCAGTCTGTCCCGGGAAAAACGCCA
TCCCAGGTGTTGTCTTTCTACTACAGGTACATGGCATCGGGCGACGCTCT
TACGGACATCATGGGTGGCGTCGAGGTGTTGTCTTTCTACTACAGGTACA
TGGCATCGGGCGACGCTCTTACGGACATCATGGGTGGCGTCGAGACGCAG
GTAAAGAAACGGAGTGAGAGGAAGATCACCCGCCCCAGGACTCCGCCCCC
CCCGCGCCCGAGCCCGCCCCCGAACCTCAGGCACCGGTCGTCCCTCCGGT
GCCCTCCGCGGCTGGCGAAGCAGCAAGACTCCGACAGCAGTAACGGCGGC
TCATCTCGACTTCCTGGCAGACGGGCGCACGGGAGCGAGCGTGCGGGGAC
GCAGGTAAAGAAACGGAGTGAGAGGAAGATCACCCGCCCCAGGACTCCGC
CCCCCCCGCGCCCGAGCCCGCCCCCGAACCTCAGGCACCGGTCGTCCCTC
CGGTGCCCTCCGCGGCTGGCGAAGCAGCAAGACTCCGACAGCAGTAACGG
CGGCTCATCTCGACTTCCTGGCAGACGGGCGCACGGGAGCGAGCGTGCGG
GG
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