mRNA_M-pyrifera_M_contig115135.3152.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115135.3152.1
Unique NamemRNA_M-pyrifera_M_contig115135.3152.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115135.3152.1 vs. uniprot
Match: UPI001CCADDA3 (glycosyltransferase n=3 Tax=unclassified Mesorhizobium TaxID=325217 RepID=UPI001CCADDA3)

HSP 1 Score: 62.4 bits (150), Expect = 2.330e-9
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 YDDLLADWRAVAGRVAAGLDLSWPVPLEAAAAAVGGFLSEGHRHHRLALADL-AD--LPTDVRAAYEATLRLVDDPSDPAALVVLDDVR 258
            Y+ ++ DWR    R+A  L ++WP P+E AAA +   +S+ H+HH  +   L AD  + + V+ AY A   L  DP+DP A+ VLD ++
Sbjct:  216 YEGIMQDWRLRLDRIAEALSVTWPRPIEEAAAEIDAHISQDHQHHAASDGALFADERVASWVKDAYSALRALETDPNDPDAMEVLDRIK 304
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BLAST of mRNA_M-pyrifera_M_contig115135.3152.1 vs. uniprot
Match: A0A3A1WNC6_9HYPH (Glycosyltransferase n=1 Tax=Aureimonas flava TaxID=2320271 RepID=A0A3A1WNC6_9HYPH)

HSP 1 Score: 61.6 bits (148), Expect = 4.350e-9
Identity = 40/92 (43.48%), Postives = 47/92 (51.09%), Query Frame = 1 
Query:    1 YDDLLADWRAVAGRVAAGLDLSWPVPLEAAAAAVGGFLSEGHRHHRLALADLA---DLPTDVRAAYEATLRLVDDPSDPAALVVLDDVRRRL 267
            +D ++ DWRAVA R+AA LDLSWP   E AA AV  FLS   RHH       A    L   V   + A   L+D   DP A+  LD V   L
Sbjct:  201 FDAVMGDWRAVATRIAADLDLSWPRTFEDAAPAVEDFLSSDLRHHAAQPRPAAAPGTLEALVDETWNALAALIDRADDPDAMARLDAVSAAL 292
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BLAST of mRNA_M-pyrifera_M_contig115135.3152.1 vs. uniprot
Match: A0A503B598_9HYPH (Glycosyltransferase n=1 Tax=Mesorhizobium sp. B2-6-2 TaxID=2589915 RepID=A0A503B598_9HYPH)

HSP 1 Score: 58.5 bits (140), Expect = 5.230e-8
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 YDDLLADWRAVAGRVAAGLDLSWPVPLEAAAAAVGGFLSEGHRHHRLALADL-AD--LPTDVRAAYEATLRLVDDPSDPAALVVLDDVR 258
            Y+ ++ DWR    R+A  L ++WP P+E AAA +   +S+ H+HH      L AD  + + V+ AY A   L  DP+D  A+ VLD ++
Sbjct:  216 YEGIMQDWRLRLDRIAKALSVTWPRPVEQAAAEIDAHISQDHQHHAATDGALFADERVASWVKDAYSALRALEADPNDSEAMEVLDRIK 304
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BLAST of mRNA_M-pyrifera_M_contig115135.3152.1 vs. uniprot
Match: UPI001BDCDC6E (hypothetical protein n=1 Tax=Aminobacter anthyllidis TaxID=1035067 RepID=UPI001BDCDC6E)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-6
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 YDDLLADWRAVAGRVAAGLDLSWPVPLEAAAAAVGGFLSEGHRHHRLALADLAD--LPTDVRAAYEATLRLVDDPSDPAALVVLDDVR 258
            YD+LL DWR +AG++ A L L WP  +  A+  V   LS+ HRHHR   A L +  +P  +R A+E   R      +      LD ++
Sbjct:  182 YDELLGDWRQLAGKMQAVLALDWPRAISDASHDVDALLSDSHRHHREPPARLFEDPVPGGLRKAFEIVDRWASSGENSDDFAELDRIK 269
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BLAST of mRNA_M-pyrifera_M_contig115135.3152.1 vs. uniprot
Match: A0A7C2NFF1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2NFF1_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 2.010e-6
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 YDDLLADWRAVAGRVAAGLDLSWPVPLEAAAAAVGGFLSEGHRHHR 138
            Y++L ADWRAVA R+A     +WP P EAAAA V  FLS   RHHR
Sbjct:  181 YEELFADWRAVAARLAERGGFAWPRPPEAAAAEVDAFLSADLRHHR 226
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BLAST of mRNA_M-pyrifera_M_contig115135.3152.1 vs. uniprot
Match: UPI0018C296CD (hypothetical protein n=1 Tax=Methylocystis sp. H62 TaxID=2785789 RepID=UPI0018C296CD)

HSP 1 Score: 53.1 bits (126), Expect = 4.090e-6
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    1 YDDLLADWRAVAGRVAAGLDLSWPVPLEAAAAAVGGFLSEGHRHHRLALADLADLPTDVR---AAYEATLRLVDDPSDPAALVVLDDVRRR 264
            +D  L DWR VA R++A ++++WP   + ++  +  FL     H+RL   +L+  P       AAYEA L L  +P   +A   LD++R++
Sbjct:  215 WDQFLTDWRVVADRISAEINIAWPRLSDRSSLEIDRFLDSSLVHNRLGQNELSSHPNVHEWTVAAYEALLELSLNPMSNSANAALDEIRKQ 305
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115135.3152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001CCADDA32.330e-938.20glycosyltransferase n=3 Tax=unclassified Mesorhizo... [more]
A0A3A1WNC6_9HYPH4.350e-943.48Glycosyltransferase n=1 Tax=Aureimonas flava TaxID... [more]
A0A503B598_9HYPH5.230e-837.08Glycosyltransferase n=1 Tax=Mesorhizobium sp. B2-6... [more]
UPI001BDCDC6E1.080e-636.36hypothetical protein n=1 Tax=Aminobacter anthyllid... [more]
A0A7C2NFF1_9DELT2.010e-658.70Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
UPI0018C296CD4.090e-632.97hypothetical protein n=1 Tax=Methylocystis sp. H62... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115135contigM-pyrifera_M_contig115135:1..267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.7734666-CDS-M-pyrifera_M_contig115135:0..2671622815667.7734666-CDS-M-pyrifera_M_contig115135:0..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115135 1..267 +
1692277512.8224716-CDS-M-pyrifera_M_contig115135:0..2671692277512.8224716-CDS-M-pyrifera_M_contig115135:0..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115135 1..267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115135.3152.1prot_M-pyrifera_M_contig115135.3152.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115135 1..267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115135.3152.1

>prot_M-pyrifera_M_contig115135.3152.1 ID=prot_M-pyrifera_M_contig115135.3152.1|Name=mRNA_M-pyrifera_M_contig115135.3152.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
YDDLLADWRAVAGRVAAGLDLSWPVPLEAAAAAVGGFLSEGHRHHRLALA
DLADLPTDVRAAYEATLRLVDDPSDPAALVVLDDVRRRL
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mRNA from alignment at M-pyrifera_M_contig115135:1..267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115135.3152.1 ID=mRNA_M-pyrifera_M_contig115135.3152.1|Name=mRNA_M-pyrifera_M_contig115135.3152.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig115135:1..267+ (Macrocystis pyrifera P11B4 male)
TATGACGACCTGCTCGCCGACTGGCGGGCCGTCGCCGGCCGCGTCGCCGC
CGGTCTCGATCTGTCCTGGCCGGTGCCACTGGAGGCGGCGGCCGCGGCGG
TCGGCGGTTTCCTTTCCGAGGGCCATCGTCATCATCGCCTCGCCCTCGCC
GATCTGGCCGACCTGCCGACGGACGTGCGGGCCGCCTACGAGGCGACGCT
GCGGCTGGTGGACGACCCGTCCGATCCCGCCGCCCTGGTGGTCCTCGACG
ACGTCCGCCGCCGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115135:1..267+

>mRNA_M-pyrifera_M_contig115135.3152.1 ID=mRNA_M-pyrifera_M_contig115135.3152.1|Name=mRNA_M-pyrifera_M_contig115135.3152.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig115135:1..267+ (Macrocystis pyrifera P11B4 male)
TATGACGACCTGCTCGCCGACTGGCGGGCCGTCGCCGGCCGCGTCGCCGC
CGGTCTCGATCTGTCCTGGCCGGTGCCACTGGAGGCGGCGGCCGCGGCGG
TCGGCGGTTTCCTTTCCGAGGGCCATCGTCATCATCGCCTCGCCCTCGCC
GATCTGGCCGACCTGCCGACGGACGTGCGGGCCGCCTACGAGGCGACGCT
GCGGCTGGTGGACGACCCGTCCGATCCCGCCGCCCTGGTGGTCCTCGACG
ACGTCCGCCGCCGCCTCTATGACGACCTGCTCGCCGACTGGCGGGCCGTC
GCCGGCCGCGTCGCCGCCGGTCTCGATCTGTCCTGGCCGGTGCCACTGGA
GGCGGCGGCCGCGGCGGTCGGCGGTTTCCTTTCCGAGGGCCATCGTCATC
ATCGCCTCGCCCTCGCCGATCTGGCCGACCTGCCGACGGACGTGCGGGCC
GCCTACGAGGCGACGCTGCGGCTGGTGGACGACCCGTCCGATCCCGCCGC
CCTGGTGGTCCTCGACGACGTCCGCCGCCGCCTC
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