mRNA_M-pyrifera_M_contig115120.3147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115120.3147.1
Unique NamemRNA_M-pyrifera_M_contig115120.3147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: A0A7S0F743_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F743_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.930e-9
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   28 PLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQ 144
            PL ++VS G V GFC+GYA+KKVG+  AVTIGLGF  LQ
Sbjct:   20 PLIAKVSFGGVMGFCSGYAMKKVGKAVAVTIGLGFFGLQ 58          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: A0A1E7F7A2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F7A2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.030e-9
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   22 AGPLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQVRRSY 159
            A P+ +++S GS+ G+C+GYALKK+G+ AAV +G GF+ +Q   SY
Sbjct:   17 AKPIIAKISFGSIMGYCSGYALKKIGKAAAVILGCGFIAVQTCVSY 62          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: A0A482R6I3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R6I3_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 4.060e-8
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 LDDLAALAGPLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQVRR 153
            LDD  AL   L +Q+S+GSV GFC+GYA+KKV +VAAV +G GF+ LQ+ R
Sbjct:  136 LDDPRALE-ELGTQLSIGSVAGFCSGYAIKKVSKVAAVAVGTGFVLLQLLR 185          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: A0A0D2WLR2_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WLR2_CAPO3)

HSP 1 Score: 54.7 bits (130), Expect = 6.970e-8
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    4 DDLAALAGPLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQ 144
            DD+ AL  PL  Q+S+G+V+GF AGYA KKVG+  A+ + +GF+ LQ
Sbjct:   37 DDVKALLAPLAQQLSMGTVSGFAAGYAAKKVGKAVAMVLAMGFVGLQ 83          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: A0A5A8BZR3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BZR3_CAFRO)

HSP 1 Score: 55.5 bits (132), Expect = 9.640e-8
Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    7 DLAALAGPLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQVRRSY 159
            D AAL     +++ LG + GF +GYA+KK+G++AA+T+GLGF+ +QV R Y
Sbjct:  117 DFAALIPDFGTELGLGILAGFSSGYAVKKIGKLAALTVGLGFVAMQVARHY 167          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: UPI001668FB7F (FUN14 domain-containing protein n=2 Tax=Deinococcus TaxID=1298 RepID=UPI001668FB7F)

HSP 1 Score: 52.4 bits (124), Expect = 3.180e-7
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   28 PLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQV 147
            PL   +SLG+V GFCAGYA+K++GR+ A+ +GL FL LQ+
Sbjct:   24 PLLPSLSLGAVLGFCAGYAIKRLGRMTALIVGLLFLALQL 63          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: A0A7V5WLN4_9DEIN (Uncharacterized protein n=1 Tax=Trueperaceae bacterium TaxID=2026798 RepID=A0A7V5WLN4_9DEIN)

HSP 1 Score: 52.0 bits (123), Expect = 3.670e-7
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   19 LAGPLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQVRRSY 159
            L GP   Q+S G V GF  GYALKKVG++ A+ +GL F+ LQ+   Y
Sbjct:   10 LLGPYIQQISFGFVAGFVVGYALKKVGKMVAIALGLIFIILQILAYY 56          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: A0A7S4JYV9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JYV9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.010e-7
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   37 SQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQ 144
            +Q+S G V G+C+GYALKKVG+ AAV +GLGF+TLQ
Sbjct:  113 TQLSYGFVCGYCSGYALKKVGKGAAVVLGLGFMTLQ 148          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: F2NQ77_MARHT (FUN14 family protein n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) TaxID=869210 RepID=F2NQ77_MARHT)

HSP 1 Score: 51.2 bits (121), Expect = 6.350e-7
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   28 PLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQV 147
            P   Q++ G + GF  GYALKK+G+V AV +G+GFL+LQ+
Sbjct:    6 PFVGQITFGGLAGFATGYALKKIGKVLAVILGIGFLSLQL 45          
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Match: B7G0Z2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0Z2_PHATC)

HSP 1 Score: 52.8 bits (125), Expect = 7.020e-7
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   37 SQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQ 144
            +Q+S G V+G+C+G ALKKVGR AAV +GLGF+TLQ
Sbjct:   94 TQLSYGFVSGYCSGMALKKVGRAAAVVLGLGFVTLQ 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115120.3147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0F743_9STRA3.930e-966.67Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7F7A2_9STRA6.030e-950.00Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A482R6I3_9ARCH4.060e-858.82Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A0D2WLR2_CAPO36.970e-853.19Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A5A8BZR3_CAFRO9.640e-849.02Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
UPI001668FB7F3.180e-757.50FUN14 domain-containing protein n=2 Tax=Deinococcu... [more]
A0A7V5WLN4_9DEIN3.670e-751.06Uncharacterized protein n=1 Tax=Trueperaceae bacte... [more]
A0A7S4JYV9_9STRA6.010e-766.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F2NQ77_MARHT6.350e-752.50FUN14 family protein n=1 Tax=Marinithermus hydroth... [more]
B7G0Z2_PHATC7.020e-766.67Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115120contigM-pyrifera_M_contig115120:368..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.5850012-CDS-M-pyrifera_M_contig115120:367..5261622815667.5850012-CDS-M-pyrifera_M_contig115120:367..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115120 368..526 +
1692277512.7600002-CDS-M-pyrifera_M_contig115120:367..5261692277512.7600002-CDS-M-pyrifera_M_contig115120:367..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115120 368..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115120.3147.1prot_M-pyrifera_M_contig115120.3147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115120 368..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115120.3147.1

>prot_M-pyrifera_M_contig115120.3147.1 ID=prot_M-pyrifera_M_contig115120.3147.1|Name=mRNA_M-pyrifera_M_contig115120.3147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
LDDLAALAGPLFSQVSLGSVTGFCAGYALKKVGRVAAVTIGLGFLTLQVR
RSY
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mRNA from alignment at M-pyrifera_M_contig115120:368..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115120.3147.1 ID=mRNA_M-pyrifera_M_contig115120.3147.1|Name=mRNA_M-pyrifera_M_contig115120.3147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig115120:368..526+ (Macrocystis pyrifera P11B4 male)
TTGGACGACCTGGCAGCTCTCGCGGGCCCACTCTTCTCCCAAGTCTCCCT CGGCTCCGTCACTGGATTCTGTGCAGGATATGCGCTCAAGAAGGTTGGCC GCGTTGCAGCAGTCACCATTGGCCTTGGCTTCCTTACTCTGCAGGTCCGT CGCTCATAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115120:368..526+

>mRNA_M-pyrifera_M_contig115120.3147.1 ID=mRNA_M-pyrifera_M_contig115120.3147.1|Name=mRNA_M-pyrifera_M_contig115120.3147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig115120:368..526+ (Macrocystis pyrifera P11B4 male)
TTGGACGACCTGGCAGCTCTCGCGGGCCCACTCTTCTCCCAAGTCTCCCT
CGGCTCCGTCACTGGATTCTGTGCAGGATATGCGCTCAAGAAGGTTGGCC
GCGTTGCAGCAGTCACCATTGGCCTTGGCTTCCTTACTCTGCAGGTCCGT
CGCTCATACTTGGACGACCTGGCAGCTCTCGCGGGCCCACTCTTCTCCCA
AGTCTCCCTCGGCTCCGTCACTGGATTCTGTGCAGGATATGCGCTCAAGA
AGGTTGGCCGCGTTGCAGCAGTCACCATTGGCCTTGGCTTCCTTACTCTG
CAGGTCCGTCGCTCATAC
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