mRNA_M-pyrifera_M_contig115118.3145.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115118.3145.1
Unique NamemRNA_M-pyrifera_M_contig115118.3145.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: A0A452IM03_9SAUR (Uncharacterized protein n=1 Tax=Gopherus agassizii TaxID=38772 RepID=A0A452IM03_9SAUR)

HSP 1 Score: 68.9 bits (167), Expect = 8.990e-13
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  103 VVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNILDGEKAHA 306
            V+YSNRS A  K G+ +K+LEDA   ++L P + KGY RKA ALEFL RFEEA   Y+  L  E  ++
Sbjct:   36 VLYSNRSAAYAKKGEYQKALEDARKTVELKPEWGKGYSRKAAALEFLNRFEEAKKTYEEGLKHEPGNS 103          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: A0A7S0RCC8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RCC8_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.920e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  100 AVVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNIL 285
            AV++SNRS AL+K  K+ K+LEDAE  ++L P + KGY+RK   LE LE F EA+ VY + L
Sbjct:   42 AVLFSNRSAALLKLKKVTKALEDAEQCIKLRPEWEKGYFRKGAVLEDLENFSEALEVYQHAL 103          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: UPI000775A8D0 (stress-induced-phosphoprotein 1-like n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI000775A8D0)

HSP 1 Score: 66.6 bits (161), Expect = 5.410e-12
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  103 VVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNILDGEKAHA 306
            V+YSNRS A  K G+  K+LEDA   ++L P + KGY RKA ALEFL RFEEA   Y   L  E  +A
Sbjct:   39 VLYSNRSAAYAKKGEYHKALEDACKTIELKPEWGKGYSRKAAALEFLNRFEEAKKTYAEGLKHEPGNA 106          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: A0A8C2Y612_COTJA (Uncharacterized protein n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2Y612_COTJA)

HSP 1 Score: 65.5 bits (158), Expect = 7.360e-12
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  103 VVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNILDGEKAHA 306
            V+YSNRS A  K G   ++L DA   ++L P + KGY RKA ALEFL RFEEA + Y+  L  E ++A
Sbjct:   13 VLYSNRSAAYAKQGDYSRALADACRTIELRPDWAKGYSRKAAALEFLNRFEEAKATYEEGLKHEPSNA 80          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: A0A836BQ08_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BQ08_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 1.460e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  100 AVVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDN 279
            AV+YSNRS AL+K  K+ K+LEDAET + L P + KG++RK   LE  E+F EA+ VY +
Sbjct:   37 AVLYSNRSAALLKLNKVTKALEDAETCITLKPDWEKGFFRKGAVLEATEKFAEALDVYQH 96          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: UPI001F00A5CC (stress-induced-phosphoprotein 1 isoform X2 n=1 Tax=Gallus gallus TaxID=9031 RepID=UPI001F00A5CC)

HSP 1 Score: 65.1 bits (157), Expect = 2.840e-11
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  103 VVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNILDGEKAHA 306
            V+YSNRS A  K G   ++L DA   ++L P + KGY RKA ALEFL RFEEA + Y+  L  E  +A
Sbjct:   39 VLYSNRSAAYAKQGDYSRALADACRTIELRPDWAKGYSRKAAALEFLNRFEEAKATYEEGLKHEPGNA 106          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: V8NVI9_OPHHA (Stress-induced-phosphoprotein 1 (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8NVI9_OPHHA)

HSP 1 Score: 68.2 bits (165), Expect = 3.290e-11
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  103 VVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNILDGEKAHA 306
            V+YSNRS A  K G+  K+LEDA   ++L P + KGY RKA ALEFL RFEEA   Y   L  E A+A
Sbjct:   82 VLYSNRSAAYAKKGEYHKALEDACKTIELKPEWGKGYSRKAAALEFLNRFEEAKKTYAEGLKHEPANA 149          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: F1L074_ASCSU (Protein-serine/threonine phosphatase n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L074_ASCSU)

HSP 1 Score: 68.2 bits (165), Expect = 3.340e-11
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   28 YDTAVDLLT---EEGGAAKPGIPKRMVAVVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNI 282
            YD A+DL T   E  GA         VAV+Y NRS+A +K      +LEDA TAL LDP ++KGYYR+A A   L +F+ A+  YD +
Sbjct:   59 YDVAIDLYTKAIELDGA---------VAVLYGNRSVAYLKKELYGSALEDAATALSLDPGYIKGYYRRATANMALGKFKLALKDYDAV 137          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: A0A7J7QRJ3_9CHLO (Tetratricopeptide repeat protein, circadian expression n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7QRJ3_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 4.590e-11
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  100 AVVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNIL 285
            AV+YSNRS AL+K  K+ K+L DAE  ++LDP+F KGY R A ALE  +R EEA+  Y   L
Sbjct:   35 AVLYSNRSAALLKLNKVAKALADAEECVKLDPAFHKGYMRMALALESQQRLEEALDCYRKAL 96          
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Match: A0A670YQZ7_PSETE (Stress-induced-phosphoprotein 1 n=41 Tax=Sauria TaxID=32561 RepID=A0A670YQZ7_PSETE)

HSP 1 Score: 67.8 bits (164), Expect = 4.600e-11
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  103 VVYSNRSIALVKTGKLEKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNILDGEKAHA 306
            V+YSNRS A  K G   K+LEDA   ++L P + KGY RKA ALEFL RFEEA + Y   L  E A+A
Sbjct:   39 VLYSNRSAAYAKKGDYHKALEDACKTIELKPEWGKGYSRKAAALEFLNRFEEAKTTYAEGLKHEPANA 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115118.3145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A452IM03_9SAUR8.990e-1351.47Uncharacterized protein n=1 Tax=Gopherus agassizii... [more]
A0A7S0RCC8_9CHLO1.920e-1253.23Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
UPI000775A8D05.410e-1252.94stress-induced-phosphoprotein 1-like n=1 Tax=Proto... [more]
A0A8C2Y612_COTJA7.360e-1250.00Uncharacterized protein n=1 Tax=Coturnix japonica ... [more]
A0A836BQ08_9CHLO1.460e-1153.33Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
UPI001F00A5CC2.840e-1150.00stress-induced-phosphoprotein 1 isoform X2 n=1 Tax... [more]
V8NVI9_OPHHA3.290e-1154.41Stress-induced-phosphoprotein 1 (Fragment) n=1 Tax... [more]
F1L074_ASCSU3.340e-1145.45Protein-serine/threonine phosphatase n=1 Tax=Ascar... [more]
A0A7J7QRJ3_9CHLO4.590e-1154.84Tetratricopeptide repeat protein, circadian expres... [more]
A0A670YQZ7_PSETE4.600e-1154.41Stress-induced-phosphoprotein 1 n=41 Tax=Sauria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115118contigM-pyrifera_M_contig115118:258..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.2
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog8469.XP_007070378.1
Preferred nameSTIP1
KEGG koko:K04734,ko:K09553,ko:K16362
KEGG Pathwayko04024,ko04062,ko04064,ko04210,ko04380,ko04620,ko04621,ko04622,ko04623,ko04624,ko04657,ko04658,ko04659,ko04660,ko04662,ko04668,ko04722,ko04920,ko04926,ko04931,ko05020,ko05120,ko05131,ko05134,ko05140,ko05142,ko05145,ko05160,ko05161,ko05162,ko05164,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05215,ko05220,ko05222,map04024,map04062,map04064,map04210,map04380,map04620,map04621,map04622,map04623,map04624,map04657,map04658,map04659,map04660,map04662,map04668,map04722,map04920,map04926,map04931,map05020,map05120,map05131,map05134,map05140,map05142,map05145,map05160,map05161,map05162,map05164,map05166,map05167,map05168,map05169,map05200,map05203,map05215,map05220,map05222
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006950,GO:0007275,GO:0007568,GO:0008022,GO:0008150,GO:0008340,GO:0009266,GO:0009408,GO:0009628,GO:0010259,GO:0012505,GO:0030234,GO:0030544,GO:0031072,GO:0032501,GO:0032502,GO:0032780,GO:0032991,GO:0042030,GO:0043086,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050790,GO:0050896,GO:0051087,GO:0051336,GO:0051346,GO:0051879,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0098772,GO:0101031
EggNOG free text desc.Heat shock chaperonin-binding motif.
EggNOG OGs38GCK@33154,3BECN@33208,3CUW9@33213,4806S@7711,491B0@7742,4CB4R@8459,COG0457@1,KOG0548@2759
COG Functional cat.O
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03110,ko04131,ko04516
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.4639502-CDS-M-pyrifera_M_contig115118:257..5631622815667.4639502-CDS-M-pyrifera_M_contig115118:257..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115118 258..563 -
1692277512.7179167-CDS-M-pyrifera_M_contig115118:257..5631692277512.7179167-CDS-M-pyrifera_M_contig115118:257..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115118 258..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115118.3145.1prot_M-pyrifera_M_contig115118.3145.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115118 258..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115118.3145.1

>prot_M-pyrifera_M_contig115118.3145.1 ID=prot_M-pyrifera_M_contig115118.3145.1|Name=mRNA_M-pyrifera_M_contig115118.3145.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
REEQRAVLLYDTAVDLLTEEGGAAKPGIPKRMVAVVYSNRSIALVKTGKL
EKSLEDAETALQLDPSFLKGYYRKAQALEFLERFEEAISVYDNILDGEKA
HA
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mRNA from alignment at M-pyrifera_M_contig115118:258..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115118.3145.1 ID=mRNA_M-pyrifera_M_contig115118.3145.1|Name=mRNA_M-pyrifera_M_contig115118.3145.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig115118:258..563- (Macrocystis pyrifera P11B4 male)
CGTGAGGAGCAGCGGGCAGTGCTTCTCTACGACACAGCGGTCGACCTCCT CACCGAGGAAGGAGGTGCTGCCAAACCCGGTATCCCCAAGAGGATGGTTG CTGTGGTCTATTCGAACCGCTCAATTGCTCTTGTGAAGACAGGGAAGTTG GAGAAATCCTTGGAGGACGCAGAGACTGCACTCCAGCTCGACCCTTCCTT CTTGAAGGGCTACTACAGGAAAGCCCAGGCACTGGAGTTCCTGGAGCGCT TTGAGGAAGCAATAAGTGTGTATGACAACATTCTTGACGGAGAGAAGGCT CATGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115118:258..563-

>mRNA_M-pyrifera_M_contig115118.3145.1 ID=mRNA_M-pyrifera_M_contig115118.3145.1|Name=mRNA_M-pyrifera_M_contig115118.3145.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig115118:258..563- (Macrocystis pyrifera P11B4 male)
CGTGAGGAGCAGCGGGCAGTGCTTCTCTACGACACAGCGGTCGACCTCCT
CACCGAGGAAGGAGGTGCTGCCAAACCCGGTATCCCCAAGAGGATGGTTG
CTGTGGTCTATTCGAACCGCTCAATTGCTCTTGTGAAGACAGGGAAGTTG
GAGAAATCCTTGGAGGACGCAGAGACTGCACTCCAGCTCGACCCTTCCTT
CTTGAAGGGCTACTACAGGAAAGCCCAGGCACTGGAGTTCCTGGAGCGCT
TTGAGGAAGCAATAAGTGTGTATGACAACATTCTTGACGGAGAGAAGGCT
CATGCACGTGAGGAGCAGCGGGCAGTGCTTCTCTACGACACAGCGGTCGA
CCTCCTCACCGAGGAAGGAGGTGCTGCCAAACCCGGTATCCCCAAGAGGA
TGGTTGCTGTGGTCTATTCGAACCGCTCAATTGCTCTTGTGAAGACAGGG
AAGTTGGAGAAATCCTTGGAGGACGCAGAGACTGCACTCCAGCTCGACCC
TTCCTTCTTGAAGGGCTACTACAGGAAAGCCCAGGCACTGGAGTTCCTGG
AGCGCTTTGAGGAAGCAATAAGTGTGTATGACAACATTCTTGACGGAGAG
AAGGCTCATGCA
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