mRNA_M-pyrifera_M_contig115066.3138.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115066.3138.1
Unique NamemRNA_M-pyrifera_M_contig115066.3138.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115066.3138.1 vs. uniprot
Match: A0A848UJ13_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UJ13_9ACTN)

HSP 1 Score: 66.2 bits (160), Expect = 4.790e-10
Identity = 68/193 (35.23%), Postives = 95/193 (49.22%), Query Frame = 1 
Query:    4 DGSGWTEVEIPGLPEQVRLWFDGLSHRGAAA-VVDFGTAETFEQVPYVVTFEHDGFGFNTDYAADGAAEVTITDLATDDVVLDRSFVGAIPDFVQFDDLGNIELLD------DDGEVIVVVPLDVYERETSAALQAAQSAAGWTEP--DYSYVPDYWVVATIDGIEWHVEELTHADDYGFGLPAINGNRVVVR 555
            DGS  TEV +P L     LW    +  G+AA VV+    + +  VP  V  EHDG        A+G   + + D +T   VL      +  D   FD+    E LD        G+ ++ VP +V+E    AA +A  S+    EP    +Y PD W++AT DG+EWHVE+L  AD +     AING+RV+ R
Sbjct:   26 DGST-TEVALPELSSPYGLW----TQNGSAAWVVELHDPQPW--VPLRVGIEHDGMVLELTERAEGWTWI-LRDASTG-AVLAEDTEPSHEDIWVFDEA--TETLDIVIADPTTGDELLRVPPEVHE----AAFEATYSSV---EPADTAAYAPDLWLLATADGVEWHVEDLPDADLWPQSA-AINGDRVLYR 199
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115066.3138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848UJ13_9ACTN4.790e-1035.23Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115066contigM-pyrifera_M_contig115066:7..564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.978741-CDS-M-pyrifera_M_contig115066:6..5641622815666.978741-CDS-M-pyrifera_M_contig115066:6..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115066 7..564 -
1692277512.4707427-CDS-M-pyrifera_M_contig115066:6..5641692277512.4707427-CDS-M-pyrifera_M_contig115066:6..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115066 7..564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115066.3138.1prot_M-pyrifera_M_contig115066.3138.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115066 7..564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115066.3138.1

>prot_M-pyrifera_M_contig115066.3138.1 ID=prot_M-pyrifera_M_contig115066.3138.1|Name=mRNA_M-pyrifera_M_contig115066.3138.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
VDGSGWTEVEIPGLPEQVRLWFDGLSHRGAAAVVDFGTAETFEQVPYVVT
FEHDGFGFNTDYAADGAAEVTITDLATDDVVLDRSFVGAIPDFVQFDDLG
NIELLDDDGEVIVVVPLDVYERETSAALQAAQSAAGWTEPDYSYVPDYWV
VATIDGIEWHVEELTHADDYGFGLPAINGNRVVVRE
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mRNA from alignment at M-pyrifera_M_contig115066:7..564-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115066.3138.1 ID=mRNA_M-pyrifera_M_contig115066.3138.1|Name=mRNA_M-pyrifera_M_contig115066.3138.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig115066:7..564- (Macrocystis pyrifera P11B4 male)
GTCGATGGCTCCGGCTGGACCGAGGTCGAGATCCCCGGCCTGCCCGAGCA
GGTCCGGCTGTGGTTCGACGGCCTCTCGCATCGTGGTGCGGCGGCAGTCG
TCGACTTCGGAACCGCTGAAACGTTCGAGCAGGTTCCGTACGTGGTGACC
TTCGAACACGACGGTTTCGGGTTCAACACCGACTACGCCGCCGACGGAGC
GGCGGAGGTGACCATCACCGACCTCGCGACTGATGACGTGGTGCTCGACC
GTTCGTTCGTCGGGGCCATCCCCGACTTCGTGCAGTTCGACGATCTCGGC
AACATCGAACTGCTCGACGATGATGGCGAGGTCATCGTTGTGGTGCCGCT
GGACGTGTACGAACGAGAGACCAGTGCGGCACTCCAGGCCGCCCAGAGCG
CCGCCGGCTGGACCGAACCCGACTACTCCTACGTCCCCGACTACTGGGTC
GTCGCCACGATCGATGGGATCGAGTGGCATGTCGAGGAGCTGACCCACGC
CGACGACTACGGCTTCGGTCTGCCCGCGATCAACGGCAACCGGGTGGTGG
TTCGCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115066:7..564-

>mRNA_M-pyrifera_M_contig115066.3138.1 ID=mRNA_M-pyrifera_M_contig115066.3138.1|Name=mRNA_M-pyrifera_M_contig115066.3138.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig115066:7..564- (Macrocystis pyrifera P11B4 male)
GTCGATGGCTCCGGCTGGACCGAGGTCGAGATCCCCGGCCTGCCCGAGCA
GGTCCGGCTGTGGTTCGACGGCCTCTCGCATCGTGGTGCGGCGGCAGTCG
TCGACTTCGGAACCGCTGAAACGTTCGAGCAGGTTCCGTACGTGGTGACC
TTCGAACACGACGGTTTCGGGTTCAACACCGACTACGCCGCCGACGGAGC
GGCGGAGGTGACCATCACCGACCTCGCGACTGATGACGTGGTGCTCGACC
GTTCGTTCGTCGGGGCCATCCCCGACTTCGTGCAGTTCGACGATCTCGGC
AACATCGAACTGCTCGACGATGATGGCGAGGTCATCGTTGTGGTGCCGCT
GGACGTGTACGAACGAGAGACCAGTGCGGCACTCCAGGCCGCCCAGAGCG
CCGCCGGCTGGACCGAACCCGACTACTCCTACGTCCCCGACTACTGGGTC
GTCGCCACGATCGATGGGATCGAGTGGCATGTCGAGGAGCTGACCCACGC
CGACGACTACGGCTTCGGTCTGCCCGCGATCAACGGCAACCGGGTGGTGG
TTCGCGAGGTCGATGGCTCCGGCTGGACCGAGGTCGAGATCCCCGGCCTG
CCCGAGCAGGTCCGGCTGTGGTTCGACGGCCTCTCGCATCGTGGTGCGGC
GGCAGTCGTCGACTTCGGAACCGCTGAAACGTTCGAGCAGGTTCCGTACG
TGGTGACCTTCGAACACGACGGTTTCGGGTTCAACACCGACTACGCCGCC
GACGGAGCGGCGGAGGTGACCATCACCGACCTCGCGACTGATGACGTGGT
GCTCGACCGTTCGTTCGTCGGGGCCATCCCCGACTTCGTGCAGTTCGACG
ATCTCGGCAACATCGAACTGCTCGACGATGATGGCGAGGTCATCGTTGTG
GTGCCGCTGGACGTGTACGAACGAGAGACCAGTGCGGCACTCCAGGCCGC
CCAGAGCGCCGCCGGCTGGACCGAACCCGACTACTCCTACGTCCCCGACT
ACTGGGTCGTCGCCACGATCGATGGGATCGAGTGGCATGTCGAGGAGCTG
ACCCACGCCGACGACTACGGCTTCGGTCTGCCCGCGATCAACGGCAACCG
GGTGGTGGTTCGCGAG
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