mRNA_M-pyrifera_M_contig115058.3133.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115058.3133.1
Unique NamemRNA_M-pyrifera_M_contig115058.3133.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115058.3133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115058contigM-pyrifera_M_contig115058:131..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue6.1e-08
Seed eggNOG ortholog236814.IX39_06700
KEGG koko:K11016
KEGG Pathwayko03070,map03070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pkd domain containing protein
EggNOG OGs1HY1K@117743,3ZRBK@59732,4NFVP@976,COG1345@1,COG1345@2,COG3210@1,COG3210@2,COG4733@1,COG4733@2
COG Functional cat.N
Best tax levelChryseobacterium
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02042,ko02044
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.7654295-CDS-M-pyrifera_M_contig115058:130..5111622815666.7654295-CDS-M-pyrifera_M_contig115058:130..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115058 131..511 +
1692277512.3887894-CDS-M-pyrifera_M_contig115058:130..5111692277512.3887894-CDS-M-pyrifera_M_contig115058:130..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115058 131..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115058.3133.1prot_M-pyrifera_M_contig115058.3133.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115058 131..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115058.3133.1

>prot_M-pyrifera_M_contig115058.3133.1 ID=prot_M-pyrifera_M_contig115058.3133.1|Name=mRNA_M-pyrifera_M_contig115058.3133.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
SASVEVNVTVQENPSVPAIEISDPNSCGFVDLEFEESEGVSYYWQPSNDS
NSKKTQDSENPKRVTADDTYYLRALKGVCWSTSITSKEVVVPQLPEIDAR
FVNVQNDCERSTIIMPPSLGETTYYWQ
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mRNA from alignment at M-pyrifera_M_contig115058:131..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115058.3133.1 ID=mRNA_M-pyrifera_M_contig115058.3133.1|Name=mRNA_M-pyrifera_M_contig115058.3133.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig115058:131..511+ (Macrocystis pyrifera P11B4 male)
AGTGCAAGTGTAGAAGTAAACGTAACTGTGCAGGAAAACCCATCCGTGCC
TGCCATAGAAATCTCAGACCCAAACAGCTGTGGGTTTGTGGATTTGGAGT
TTGAAGAAAGTGAGGGAGTCTCTTATTACTGGCAACCATCCAATGATTCA
AATTCCAAAAAAACACAGGATAGTGAAAACCCCAAACGAGTGACAGCAGA
TGATACCTACTATTTGAGGGCATTAAAGGGTGTTTGTTGGAGTACCAGTA
TAACCTCAAAAGAGGTGGTCGTACCTCAGCTTCCGGAAATTGACGCTCGC
TTCGTGAACGTTCAAAATGATTGTGAACGATCGACGATTATTATGCCGCC
GTCCCTCGGGGAGACCACCTACTACTGGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115058:131..511+

>mRNA_M-pyrifera_M_contig115058.3133.1 ID=mRNA_M-pyrifera_M_contig115058.3133.1|Name=mRNA_M-pyrifera_M_contig115058.3133.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig115058:131..511+ (Macrocystis pyrifera P11B4 male)
AGTGCAAGTGTAGAAGTAAACGTAACTGTGCAGGAAAACCCATCCGTGCC
TGCCATAGAAATCTCAGACCCAAACAGCTGTGGGTTTGTGGATTTGGAGT
TTGAAGAAAGTGAGGGAGTCTCTTATTACTGGCAACCATCCAATGATTCA
AATTCCAAAAAAACACAGGATAGTGAAAACCCCAAACGAGTGACAGCAGA
TGATACCTACTATTTGAGGGCATTAAAGGGTGTTTGTTGGAGTACCAGTA
TAACCTCAAAAGAGGTGGTCGTACCTCAGCTTCCGGAAATTGACGCTCGC
TTCGTGAACGTTCAAAATGATTGTGAACGATCGACGATTATTATGCCGCC
GTCCCTCGGGGAGACCACCTACTACTGGCAAAGTGCAAGTGTAGAAGTAA
ACGTAACTGTGCAGGAAAACCCATCCGTGCCTGCCATAGAAATCTCAGAC
CCAAACAGCTGTGGGTTTGTGGATTTGGAGTTTGAAGAAAGTGAGGGAGT
CTCTTATTACTGGCAACCATCCAATGATTCAAATTCCAAAAAAACACAGG
ATAGTGAAAACCCCAAACGAGTGACAGCAGATGATACCTACTATTTGAGG
GCATTAAAGGGTGTTTGTTGGAGTACCAGTATAACCTCAAAAGAGGTGGT
CGTACCTCAGCTTCCGGAAATTGACGCTCGCTTCGTGAACGTTCAAAATG
ATTGTGAACGATCGACGATTATTATGCCGCCGTCCCTCGGGGAGACCACC
TACTACTGGCAA
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