mRNA_M-pyrifera_M_contig101490.312.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101490.312.1
Unique NamemRNA_M-pyrifera_M_contig101490.312.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A183KDQ9_9TREM (Uncharacterized protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KDQ9_9TREM)

HSP 1 Score: 70.5 bits (171), Expect = 8.330e-12
Identity = 45/114 (39.47%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLR---EFSESVAEQAIASLFQL 333
            A+VRRAA++A+V+T  TLP L+ER +D++D VRRAA + +A       LS ++R  ++  G++D S+ VR+AT  L+  W  G     + LL R   E   S +++A+ SLF++
Sbjct:  211 AEVRRAALAAMVLTTRTLPSLVERCRDLADNVRRAAYKLLASRGILRPLSIAKRIRILQDGLSDRSEEVRKATKELVLAWFNGTNRDPVLLLRRLDPEGDPSTSQKALDSLFEM 324          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A8E0VJ18_9TREM (Condensin complex subunit 3 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0VJ18_9TREM)

HSP 1 Score: 70.5 bits (171), Expect = 8.800e-12
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLREFSESVAE 306
            ADVRRAA++A+V+T  TLP L+ER +DVSD+VRR A + +A       LS ++R  ++  G+TD S  VRQA   L+  W     +  + LL R  +E V E
Sbjct:   75 ADVRRAALAAMVLTTRTLPSLIERCRDVSDSVRRTAYKILATRGVLRPLSIAKRIRVLQDGLTDRSAEVRQAAQELVISWFKATENDPVKLLRRLDTEGVPE 176          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A430QGC8_SCHBO (Condensin complex subunit 3 n=1 Tax=Schistosoma bovis TaxID=6184 RepID=A0A430QGC8_SCHBO)

HSP 1 Score: 70.5 bits (171), Expect = 8.810e-12
Identity = 45/114 (39.47%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLR---EFSESVAEQAIASLFQL 333
            A+VRRAA++A+V+T  TLP L+ER +D++D VRRAA + +A       LS ++R  ++  G++D S+ VR+AT  L+  W  G     + LL R   E   S +++A+ SLF++
Sbjct:  211 AEVRRAALAAMVLTTRTLPSLVERCRDLADNVRRAAYKLLASRGILRPLSIAKRIRILQDGLSDRSEEVRKATKELVLAWFNGTNRDPVLLLRRLDPEGDPSTSQKALDSLFEM 324          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A3Q0KI66_SCHMA (Cnd3 domain-containing protein n=4 Tax=Schistosoma TaxID=6181 RepID=A0A3Q0KI66_SCHMA)

HSP 1 Score: 70.5 bits (171), Expect = 8.870e-12
Identity = 45/114 (39.47%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLR---EFSESVAEQAIASLFQL 333
            A+VRRAA++A+V+T  TLP L+ER +D++D VRRAA + +A       LS ++R  ++  G++D S+ VR+AT  L+  W  G     + LL R   E   S +++A+ SLF++
Sbjct:  193 AEVRRAALAAMVLTTRTLPSLVERCRDLADNVRRAAYKLLASRGILRPLSIAKRIRILQDGLSDRSEEVRKATKELVLAWFNGTNRDPVLLLRRLDPEGDPSTSQKALDSLFEM 306          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A4Z2D0Q7_SCHJA (Condensin complex subunit 3 n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2D0Q7_SCHJA)

HSP 1 Score: 69.3 bits (168), Expect = 2.250e-11
Identity = 45/114 (39.47%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLREFSES---VAEQAIASLFQL 333
            A+VRRAA++A+V+T  TLP L+ER +D++D VRRAA + +A       LS ++R  ++  G++D S+ VR+AT  L+  W  G     + LL R   ES    +++A+ SLF++
Sbjct:  193 AEVRRAALAAMVLTTRTLPSLVERCRDLADNVRRAAYKLLASRGILRPLSIAKRIRILQDGLSDRSEEVRKATKELVLAWFNGSNRDPVLLLRRLDPESDPGTSQKALDSLFEV 306          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A504YZ57_FASGI (Condensin complex subunit 3 n=2 Tax=Fasciola TaxID=6191 RepID=A0A504YZ57_FASGI)

HSP 1 Score: 67.4 bits (163), Expect = 1.070e-10
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    1 ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLREFSESVAE 306
            A+VRRAA++A+V+T  TLP L+ER +DVSD+VRR A + +A       LS ++R  ++  G+TD S  VRQA   L+  W        + LL R  +E V E
Sbjct:  196 AEVRRAALAAMVLTTRTLPSLVERCRDVSDSVRRTAYKILATRGVLRPLSIAKRIRVLHDGLTDRSAEVRQAAQELVLSWFKATEGDPVQLLRRLDTEGVPE 297          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A8J4WGY5_9TREM (UVR domain-containing protein n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4WGY5_9TREM)

HSP 1 Score: 66.2 bits (160), Expect = 2.700e-10
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    4 DVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLREFSESVAE 306
            +VRRAA++A+V+T +TLP L+ER +D+SDTVRR A + +        LS ++R  ++  G+TD S  VRQA   L+  W        + LL R  +E V E
Sbjct:   26 EVRRAALAAMVLTTKTLPSLIERCRDLSDTVRRTAYKILTARSVLRPLSIAKRIRILQDGLTDRSAEVRQAAQELVLAWFNATNRDPIHLLRRLDTEGVPE 126          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A5J4NV50_9TREM (Condensin complex subunit 3 n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NV50_9TREM)

HSP 1 Score: 66.2 bits (160), Expect = 2.710e-10
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    4 DVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLREFSESVAE 306
            +VRRAA++A+V+T +TLP L+ER +D+SDTVRR A + +        LS ++R  ++  G+TD S  VRQA   L+  W        + LL R  +E V E
Sbjct:  194 EVRRAALAAMVLTTKTLPSLIERCRDLSDTVRRTAYKILTARSVLRPLSIAKRIRILQDGLTDRSAEVRQAAQELVLAWFNATNRDPIHLLRRLDTEGVPE 294          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: A0A7S1EUK3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUK3_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 4.550e-10
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVMLLAK--WLVGH 252
            A VR+A ++++ +T+ETL  LL+RT+DV+  VR AA+  +A  V P +L+  QRD L+  G+ D +++VR+AT   L +  W  G+
Sbjct:   88 ASVRKACVTSIAITKETLQCLLQRTRDVNLEVRLAAIRGIALKVEPTMLTKEQRDSLLEQGLRDRTENVRKATAEYLLRDGWFHGY 173          
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Match: UPI000F67EB79 (LOW QUALITY PROTEIN: condensin complex subunit 3-like n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F67EB79)

HSP 1 Score: 65.5 bits (158), Expect = 4.810e-10
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    4 DVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLSASQRDFLVSSGITDSSKSVRQATVM-LLAKWLVGHRDSELGLLLR---EFSESVAEQAIASLFQ 330
            DVRRA ++++ +T +TLPD+LERT+DV D VRR A E ++  V    L+ +QR  L++ G+TD S  VR A    L+  WL     + L LL     E +   AE A+ S+F+
Sbjct:  211 DVRRAVLTSIAITFQTLPDILERTRDVRDLVRRQAFEVISRKVHLKSLTIAQRVRLIAEGLTDRSDVVRGAVEKNLIQSWLRMVNGNVLDLLSCLDVETAVKEAELALQSMFR 323          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101490.312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A183KDQ9_9TREM8.330e-1239.47Uncharacterized protein n=1 Tax=Schistosoma curass... [more]
A0A8E0VJ18_9TREM8.800e-1243.14Condensin complex subunit 3 n=1 Tax=Fasciolopsis b... [more]
A0A430QGC8_SCHBO8.810e-1239.47Condensin complex subunit 3 n=1 Tax=Schistosoma bo... [more]
A0A3Q0KI66_SCHMA8.870e-1239.47Cnd3 domain-containing protein n=4 Tax=Schistosoma... [more]
A0A4Z2D0Q7_SCHJA2.250e-1139.47Condensin complex subunit 3 n=2 Tax=Schistosoma ja... [more]
A0A504YZ57_FASGI1.070e-1042.16Condensin complex subunit 3 n=2 Tax=Fasciola TaxID... [more]
A0A8J4WGY5_9TREM2.700e-1040.59UVR domain-containing protein n=1 Tax=Paragonimus ... [more]
A0A5J4NV50_9TREM2.710e-1040.59Condensin complex subunit 3 n=1 Tax=Paragonimus we... [more]
A0A7S1EUK3_9RHOD4.550e-1040.70Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
UPI000F67EB794.810e-1040.71LOW QUALITY PROTEIN: condensin complex subunit 3-l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101490contigM-pyrifera_M_contig101490:326..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.4
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog6183.Smp_078920.1
KEGG koko:K06678
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000281,GO:0000785,GO:0000793,GO:0000796,GO:0000819,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0022411,GO:0030261,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0048285,GO:0051276,GO:0051301,GO:0061640,GO:0070193,GO:0070194,GO:0071103,GO:0071840,GO:0098813,GO:0140014,GO:1903047
EggNOG free text desc.mitotic chromosome condensation
EggNOG OGs39S36@33154,3BGGA@33208,3CUZA@33213,COG5218@1,KOG2025@2759
COG Functional cat.BD
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.8717322-CDS-M-pyrifera_M_contig101490:325..6701622815512.8717322-CDS-M-pyrifera_M_contig101490:325..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101490 326..670 -
1692277445.1015875-CDS-M-pyrifera_M_contig101490:325..6701692277445.1015875-CDS-M-pyrifera_M_contig101490:325..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101490 326..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101490.312.1prot_M-pyrifera_M_contig101490.312.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101490 326..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101490.312.1

>prot_M-pyrifera_M_contig101490.312.1 ID=prot_M-pyrifera_M_contig101490.312.1|Name=mRNA_M-pyrifera_M_contig101490.312.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
ADVRRAAISALVVTRETLPDLLERTQDVSDTVRRAALESVAESVAPGVLS
ASQRDFLVSSGITDSSKSVRQATVMLLAKWLVGHRDSELGLLLREFSESV
AEQAIASLFQLAARP
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mRNA from alignment at M-pyrifera_M_contig101490:326..670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101490.312.1 ID=mRNA_M-pyrifera_M_contig101490.312.1|Name=mRNA_M-pyrifera_M_contig101490.312.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig101490:326..670- (Macrocystis pyrifera P11B4 male)
GCTGATGTTCGTCGAGCTGCAATTTCGGCACTTGTCGTCACCCGTGAGAC TCTTCCAGATCTACTAGAGCGCACACAAGATGTATCTGATACAGTTCGTC GAGCAGCTTTGGAATCAGTTGCAGAAAGCGTCGCTCCAGGCGTGCTCTCA GCTTCACAACGCGATTTCCTAGTTTCCTCTGGCATTACCGACTCAAGCAA GAGTGTACGGCAAGCAACTGTCATGTTGCTTGCGAAGTGGTTGGTAGGGC ATCGTGATTCAGAGCTGGGACTGCTGTTGAGAGAATTTTCTGAATCTGTC GCAGAGCAAGCAATTGCGTCCTTGTTTCAGCTTGCTGCACGTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101490:326..670-

>mRNA_M-pyrifera_M_contig101490.312.1 ID=mRNA_M-pyrifera_M_contig101490.312.1|Name=mRNA_M-pyrifera_M_contig101490.312.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig101490:326..670- (Macrocystis pyrifera P11B4 male)
GCTGATGTTCGTCGAGCTGCAATTTCGGCACTTGTCGTCACCCGTGAGAC
TCTTCCAGATCTACTAGAGCGCACACAAGATGTATCTGATACAGTTCGTC
GAGCAGCTTTGGAATCAGTTGCAGAAAGCGTCGCTCCAGGCGTGCTCTCA
GCTTCACAACGCGATTTCCTAGTTTCCTCTGGCATTACCGACTCAAGCAA
GAGTGTACGGCAAGCAACTGTCATGTTGCTTGCGAAGTGGTTGGTAGGGC
ATCGTGATTCAGAGCTGGGACTGCTGTTGAGAGAATTTTCTGAATCTGTC
GCAGAGCAAGCAATTGCGTCCTTGTTTCAGCTTGCTGCACGTCCAGCTGA
TGTTCGTCGAGCTGCAATTTCGGCACTTGTCGTCACCCGTGAGACTCTTC
CAGATCTACTAGAGCGCACACAAGATGTATCTGATACAGTTCGTCGAGCA
GCTTTGGAATCAGTTGCAGAAAGCGTCGCTCCAGGCGTGCTCTCAGCTTC
ACAACGCGATTTCCTAGTTTCCTCTGGCATTACCGACTCAAGCAAGAGTG
TACGGCAAGCAACTGTCATGTTGCTTGCGAAGTGGTTGGTAGGGCATCGT
GATTCAGAGCTGGGACTGCTGTTGAGAGAATTTTCTGAATCTGTCGCAGA
GCAAGCAATTGCGTCCTTGTTTCAGCTTGCTGCACGTCCA
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