mRNA_M-pyrifera_M_contig115010.3120.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115010.3120.1
Unique NamemRNA_M-pyrifera_M_contig115010.3120.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A7K1ZDH2_9ACTN (SDR family oxidoreductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZDH2_9ACTN)

HSP 1 Score: 216 bits (550), Expect = 8.290e-68
Identity = 107/125 (85.60%), Postives = 119/125 (95.20%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFYDT 375
            VLIGSQASLKPV  +PQ AYA+AKSALLAMAR+MA+ELGPQ IR+NTV+PTWMWGPNV+MYCEWQA+ERG+TAEEVRDEIAQGMALR MPTDADVAEAAVFFASDR+ MITGQR+LVNAGEF+DT
Sbjct:  139 VLIGSQASLKPVPAIPQFAYAAAKSALLAMARNMASELGPQSIRVNTVIPTWMWGPNVQMYCEWQASERGITAEEVRDEIAQGMALRVMPTDADVAEAAVFFASDRARMITGQRMLVNAGEFFDT 263          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A6B1EF18_9ACTN (SDR family oxidoreductase n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EF18_9ACTN)

HSP 1 Score: 190 bits (482), Expect = 1.620e-57
Identity = 92/123 (74.80%), Postives = 109/123 (88.62%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFY 369
            VLIGSQAS++PV + PQS Y +AKSALL++ARD++AELGP GIR+NTVVP+WMWGPNVK YCEWQA  RG+TAEEV+ EIAQGMALR MPTD+D AEAA+F AS+R+ MITGQ L+VNAGEFY
Sbjct:  138 VLIGSQASMRPVAVFPQSPYGAAKSALLSVARDLSAELGPSGIRVNTVVPSWMWGPNVKFYCEWQAGIRGITAEEVKHEIAQGMALREMPTDSDAAEAAIFLASERARMITGQTLVVNAGEFY 260          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A7K2D6L1_9ACTN (SDR family oxidoreductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2D6L1_9ACTN)

HSP 1 Score: 189 bits (479), Expect = 4.470e-57
Identity = 92/123 (74.80%), Postives = 107/123 (86.99%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFY 369
            VLIGSQAS++PV   PQS Y +AKSALL++ARD+AAELGP GIR+NTVVP+WMWGPNVK+YCEWQA  RG+T EEV+ EIAQGMALR MPTD+DVAEA VF AS+R+ MITGQ L+VNAG FY
Sbjct:  137 VLIGSQASMRPVAEFPQSPYGAAKSALLSLARDLAAELGPSGIRVNTVVPSWMWGPNVKLYCEWQAGTRGITVEEVKHEIAQGMALREMPTDSDVAEAVVFMASERARMITGQTLVVNAGHFY 259          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A2D8LUW5_9ACTN (Short-chain dehydrogenase n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LUW5_9ACTN)

HSP 1 Score: 167 bits (422), Expect = 1.740e-48
Identity = 80/125 (64.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFYDT 375
            VLIGSQ+++K  + +PQ  Y  +K+ALLA+ARD+A +LGP GIR+NTVVP+WMWGPNV+MYC+WQA+ERGV  E++++E+A   ALR M  D DVAE+ +FF SDRS+MITGQRLLVNAGE++DT
Sbjct:  138 VLIGSQSAMKS-NPVPQGVYGPSKAALLAVARDLANDLGPDGIRVNTVVPSWMWGPNVQMYCQWQASERGVEPEDIKNELASANALRAMAADTDVAESVMFFLSDRSSMITGQRLLVNAGEYFDT 261          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A3M2G2Y4_ACTSX (SDR family oxidoreductase n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G2Y4_ACTSX)

HSP 1 Score: 162 bits (411), Expect = 1.400e-46
Identity = 82/123 (66.67%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFY 369
            V IGSQ+SL+P + M Q AYA++K ALLA  R +A ELGPQGIR+NTV+ TWMWGPNV++YC WQAAERGVT E VRDEIA  MAL  +P D DVAEA V+  SDR+ M+TGQ LLVNAGE +
Sbjct:  158 VFIGSQSSLRPAEEMFQVAYAASKGALLAAQRSLARELGPQGIRVNTVIATWMWGPNVELYCAWQAAERGVTPEAVRDEIASRMALGEIPRDDDVAEAVVWLLSDRARMVTGQELLVNAGEIF 280          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A6G0AB19_9ACTN (SDR family oxidoreductase n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0AB19_9ACTN)

HSP 1 Score: 138 bits (347), Expect = 3.050e-37
Identity = 70/121 (57.85%), Postives = 87/121 (71.90%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGE 363
            VLIGSQ+ L P   +PQ AYA++K ALL+    +A ELGP GIR+N VVPTWMWGP V++Y +WQ++ RGV   E+  E+  GM L  +P D +VA+A VF  SDRS MITGQ LLVNAGE
Sbjct:  136 VLIGSQSMLLPSPAVPQIAYAASKGALLSATYHLAQELGPDGIRVNMVVPTWMWGPPVELYVDWQSSARGVERHEIVSELTAGMPLGEIPADEEVADAVVFLCSDRSRMITGQSLLVNAGE 256          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A7Y3GAM6_9DELT (SDR family oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GAM6_9DELT)

HSP 1 Score: 137 bits (346), Expect = 4.540e-37
Identity = 73/123 (59.35%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFY 369
            VLIGSQA   P   MPQ AYA+AK ALL+    MA ELGP+ IR+N V+PTWMWGP V+ Y  WQ+ ER +  E V+ E++  MALR +P D DVAEA +FF SDRS MITG+ L+VNAGE Y
Sbjct:  138 VLIGSQAMWLPPK-MPQIAYAAAKGALLSSMYHMADELGPKRIRVNMVIPTWMWGPPVEAYMNWQSKERKLPLETVKAEVSDQMALREIPADEDVAEAVIFFCSDRSRMITGETLMVNAGELY 259          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A8F6DVN1_9ACTN (SDR family oxidoreductase n=1 Tax=Skermania piniformis TaxID=39122 RepID=A0A8F6DVN1_9ACTN)

HSP 1 Score: 135 bits (341), Expect = 2.180e-36
Identity = 71/123 (57.72%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFY 369
            VLIG+QA   P   +PQ+AYA++K AL A    +A ELGPQ IR+NTVVPTWMWGPNV+ Y ++QA  +GV   EV+  IA+ MALR +P D DVA A +FFAS+ S M+TGQ L VNAGE++
Sbjct:  134 VLIGTQAMFAPS--LPQTAYAASKGALHAAMLSLAKELGPQAIRVNTVVPTWMWGPNVEAYVQFQAERKGVEPAEVQAGIARRMALREIPEDGDVANAVIFFASELSRMVTGQTLFVNAGEYF 254          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: UPI00082E7427 (SDR family oxidoreductase n=1 Tax=Aldersonia kunmingensis TaxID=408066 RepID=UPI00082E7427)

HSP 1 Score: 134 bits (336), Expect = 1.390e-35
Identity = 68/123 (55.28%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 VLIGSQASLKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEFY 369
            VL+G+QA   P   +PQ+AYAS+K AL +    +A ELGP+ IR+N VVPTWMWGPNV++Y +  A +RGV+ EEV+  IA+ MALR +P D DVA + VFFASD + M+TGQ L+VN GE++
Sbjct:  139 VLVGTQAMFNPA--LPQTAYASSKGALHSAMFSLAKELGPKKIRVNMVVPTWMWGPNVEIYVQMTAKQRGVSEEEVKAGIAKKMALREIPEDGDVANSVVFFASDHARMLTGQTLIVNGGEYF 259          
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Match: A0A7C7ZHH2_9DELT (SDR family oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7ZHH2_9DELT)

HSP 1 Score: 132 bits (333), Expect = 3.890e-35
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    1 VLIGSQAS-LKPVDMMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCEWQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQRLLVNAGEF 366
            VL+GSQ+  L P   MPQ AYAS+K AL++    +A ELGP  IR+N V+PTWMWGP V+ Y +WQ+ ERG++ + V DEI  GM L  +P D DVAEA +FF SDR+ MITG+ LL+NAGEF
Sbjct:  138 VLVGSQSMWLSPP--MPQIAYASSKGALVSSMYHLAEELGPDKIRVNMVIPTWMWGPPVEGYVKWQSKERGISEQAVIDEITSGMPLGEIPKDDDVAEAIIFFCSDRARMITGETLLINAGEF 258          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115010.3120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1ZDH2_9ACTN8.290e-6885.60SDR family oxidoreductase n=2 Tax=Acidimicrobiacea... [more]
A0A6B1EF18_9ACTN1.620e-5774.80SDR family oxidoreductase n=3 Tax=Acidimicrobiacea... [more]
A0A7K2D6L1_9ACTN4.470e-5774.80SDR family oxidoreductase n=2 Tax=Acidimicrobiacea... [more]
A0A2D8LUW5_9ACTN1.740e-4864.00Short-chain dehydrogenase n=9 Tax=Acidimicrobiacea... [more]
A0A3M2G2Y4_ACTSX1.400e-4666.67SDR family oxidoreductase n=1 Tax=Actinomyces sp. ... [more]
A0A6G0AB19_9ACTN3.050e-3757.85SDR family oxidoreductase n=2 Tax=Bacteria TaxID=2... [more]
A0A7Y3GAM6_9DELT4.540e-3759.35SDR family oxidoreductase n=1 Tax=Myxococcales bac... [more]
A0A8F6DVN1_9ACTN2.180e-3657.72SDR family oxidoreductase n=1 Tax=Skermania pinifo... [more]
UPI00082E74271.390e-3555.28SDR family oxidoreductase n=1 Tax=Aldersonia kunmi... [more]
A0A7C7ZHH2_9DELT3.890e-3556.91SDR family oxidoreductase n=1 Tax=Myxococcales bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115010contigM-pyrifera_M_contig115010:32..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score128.3
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog298654.FraEuI1c_2009
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dehydrogenase
EggNOG OGs2GMAG@201174,COG1028@1,COG1028@2
COG Functional cat.IQ
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size536
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115010.3120.1prot_M-pyrifera_M_contig115010.3120.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115010 190..528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.1402264-UTR-M-pyrifera_M_contig115010:31..1891622815666.1402264-UTR-M-pyrifera_M_contig115010:31..189Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115010 32..189 -
1692277512.097129-UTR-M-pyrifera_M_contig115010:31..1891692277512.097129-UTR-M-pyrifera_M_contig115010:31..189Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115010 32..189 -
1622815666.1596909-UTR-M-pyrifera_M_contig115010:528..5671622815666.1596909-UTR-M-pyrifera_M_contig115010:528..567Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115010 529..567 -
1692277512.1176462-UTR-M-pyrifera_M_contig115010:528..5671692277512.1176462-UTR-M-pyrifera_M_contig115010:528..567Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115010 529..567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.1501553-CDS-M-pyrifera_M_contig115010:189..5281622815666.1501553-CDS-M-pyrifera_M_contig115010:189..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115010 190..528 -
1692277512.1081476-CDS-M-pyrifera_M_contig115010:189..5281692277512.1081476-CDS-M-pyrifera_M_contig115010:189..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115010 190..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115010.3120.1

>prot_M-pyrifera_M_contig115010.3120.1 ID=prot_M-pyrifera_M_contig115010.3120.1|Name=mRNA_M-pyrifera_M_contig115010.3120.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MMPQSAYASAKSALLAMARDMAAELGPQGIRINTVVPTWMWGPNVKMYCE
WQAAERGVTAEEVRDEIAQGMALRTMPTDADVAEAAVFFASDRSAMITGQ
RLLVNAGEFYDT*
back to top

mRNA from alignment at M-pyrifera_M_contig115010:32..567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115010.3120.1 ID=mRNA_M-pyrifera_M_contig115010.3120.1|Name=mRNA_M-pyrifera_M_contig115010.3120.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=536bp|location=Sequence derived from alignment at M-pyrifera_M_contig115010:32..567- (Macrocystis pyrifera P11B4 male)
GTTCTGATCGGCTCCCAGGCATCACTCAAGCCGGTCGACATGATGCCCCA GTCGGCGTATGCGTCGGCCAAGTCGGCCCTTCTCGCCATGGCGCGAGACA TGGCGGCAGAGCTCGGACCCCAGGGCATCAGGATCAATACGGTCGTCCCG ACCTGGATGTGGGGACCAAATGTGAAGATGTACTGCGAGTGGCAGGCCGC CGAGCGCGGCGTCACCGCCGAAGAGGTGCGCGACGAGATCGCCCAGGGCA TGGCCTTGCGCACGATGCCGACCGACGCCGACGTCGCCGAGGCGGCGGTC TTCTTCGCAAGTGACCGGTCGGCGATGATCACGGGACAGCGCTTGCTGGT CAACGCCGGCGAGTTCTACGACACGTGAGCGTCCCGGCGCTCCCCGCGGC GTCGGTACTGGTCGTCGACGATCGGCCTGATCTCCATGTCGTCATCGGCC GTCGGCGGCCTGGTTCGCTCTTCGTCGGTGGACTCATCGTCTTCCCTGGT GGGGGAGTCGACCCGGTGGATCGGGCCGTCGAAGCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115010:32..567-

>mRNA_M-pyrifera_M_contig115010.3120.1 ID=mRNA_M-pyrifera_M_contig115010.3120.1|Name=mRNA_M-pyrifera_M_contig115010.3120.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig115010:32..567- (Macrocystis pyrifera P11B4 male)
ATGATGCCCCAGTCGGCGTATGCGTCGGCCAAGTCGGCCCTTCTCGCCAT
GGCGCGAGACATGGCGGCAGAGCTCGGACCCCAGGGCATCAGGATCAATA
CGGTCGTCCCGACCTGGATGTGGGGACCAAATGTGAAGATGTACTGCGAG
TGGCAGGCCGCCGAGCGCGGCGTCACCGCCGAAGAGGTGCGCGACGAGAT
CGCCCAGGGCATGGCCTTGCGCACGATGCCGACCGACGCCGACGTCGCCG
AGGCGGCGGTCTTCTTCGCAAGTGACCGGTCGGCGATGATCACGGGACAG
CGCTTGCTGGTCAACGCCGGCGAGTTCTACGACACGTGAATGATGCCCCA
GTCGGCGTATGCGTCGGCCAAGTCGGCCCTTCTCGCCATGGCGCGAGACA
TGGCGGCAGAGCTCGGACCCCAGGGCATCAGGATCAATACGGTCGTCCCG
ACCTGGATGTGGGGACCAAATGTGAAGATGTACTGCGAGTGGCAGGCCGC
CGAGCGCGGCGTCACCGCCGAAGAGGTGCGCGACGAGATCGCCCAGGGCA
TGGCCTTGCGCACGATGCCGACCGACGCCGACGTCGCCGAGGCGGCGGTC
TTCTTCGCAAGTGACCGGTCGGCGATGATCACGGGACAGCGCTTGCTGGT
CAACGCCGGCGAGTTCTACGACACGTGA
back to top