mRNA_M-pyrifera_M_contig114986.3113.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114986.3113.1
Unique NamemRNA_M-pyrifera_M_contig114986.3113.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: H0VA48_CAVPO (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cavia porcellus TaxID=10141 RepID=H0VA48_CAVPO)

HSP 1 Score: 55.8 bits (133), Expect = 2.290e-7
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   82 TYRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFNDSVVDEV 210
            TYRL+  ++HLGST++SGHY TD+++F    WS++ND +V  +
Sbjct:  792 TYRLIGIISHLGSTLNSGHYITDAYDFTKQAWSTYNDLLVSSI 834
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: A0A7S3GFK0_9EUKA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GFK0_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 2.730e-6
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   67 SGKLATYRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFNDSVVDE 207
            SG+   Y+LV+ +NHLGSTM  GHYT + +N  +++W +++DS V E
Sbjct:  389 SGRGFVYKLVAVINHLGSTMQGGHYTANCYNAWSDKWVTYDDSRVGE 435
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: A0A815D9T9_9BILA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815D9T9_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 3.800e-6
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   22 TFLPIPADHCQPCGDSGKLATYRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFNDSVVDEVR 213
            TF+  P ++    G   K A Y L+S +NH+G T+ SGHY T S N    +W SFND V+ E++
Sbjct:  645 TFIDYPVNNFD-LGQYEKDAIYDLISVINHMG-TLSSGHYLTYSKNHRTQKWYSFNDEVIREIK 706
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: A0A8C5VFG3_MICMU (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Microcebus murinus TaxID=30608 RepID=A0A8C5VFG3_MICMU)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-5
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   67 SGKLATYRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFNDSVVDEV 210
            +G L  YRLVS V+H+G+++ SGHY +D+++F    W + ND  V E+
Sbjct:  815 TGALQAYRLVSVVSHIGNSVASGHYVSDTYDFQQQSWFTCNDLRVSEI 862
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: A0A6J2MM25_9CHIR (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Phyllostomus TaxID=9422 RepID=A0A6J2MM25_9CHIR)

HSP 1 Score: 50.1 bits (118), Expect = 2.510e-5
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   85 YRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFNDSVVDEVR 213
            YRL+  V+H+GST+ SGHY +D+F+F    W ++ND  V  ++
Sbjct:  833 YRLIGVVSHIGSTLHSGHYISDAFDFERQAWFTYNDMQVSSIQ 875
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: V4AFE6_LOTGI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AFE6_LOTGI)

HSP 1 Score: 49.3 bits (116), Expect = 4.680e-5
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   37 PADHCQP---CGDSGKLATYRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFNDSVV 201
            P+D+C       ++   + +RLVS VNH+GS+ ++GHY +D F+     W SF+DS V
Sbjct:  747 PSDYCSEKFYTENNWSCSNFRLVSIVNHIGSSSETGHYISDVFDIKKKSWMSFDDSRV 804
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: A0A6A4X340_AMPAM (Ubiquitin carboxyl-terminal hydrolase 37 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4X340_AMPAM)

HSP 1 Score: 46.2 bits (108), Expect = 8.680e-5
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   82 TYRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFND---SVVDEV 210
            TYRLV  V+H GS   SGHY +D ++ G +RW  ++D   S VDE 
Sbjct:    9 TYRLVGVVSHYGSATHSGHYVSDVYSVGRDRWFHYDDRRVSCVDEA 54
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BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Match: A0A6A4UZ19_AMPAM (Inactive rhomboid protein 1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4UZ19_AMPAM)

HSP 1 Score: 48.5 bits (114), Expect = 8.720e-5
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   82 TYRLVSKVNHLGSTMDSGHYTTDSFNFGANRWSSFNDSVV 201
            TYRLV  V+H G    SGHY +D ++ G NRW  +NDS V
Sbjct:  673 TYRLVGIVSHYGGATHSGHYVSDVYSVGRNRWYHYNDSRV 712
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114986.3113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
H0VA48_CAVPO2.290e-748.84Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Cavi... [more]
A0A7S3GFK0_9EUKA2.730e-646.81Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Palp... [more]
A0A815D9T9_9BILA3.800e-642.19Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Didy... [more]
A0A8C5VFG3_MICMU2.500e-543.75Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Micr... [more]
A0A6J2MM25_9CHIR2.510e-544.19Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Phyl... [more]
V4AFE6_LOTGI4.680e-539.66Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lott... [more]
A0A6A4X340_AMPAM8.680e-547.83Ubiquitin carboxyl-terminal hydrolase 37 n=1 Tax=A... [more]
A0A6A4UZ19_AMPAM8.720e-552.50Inactive rhomboid protein 1 n=1 Tax=Amphibalanus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114986contigM-pyrifera_M_contig114986:350..562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.7575274-CDS-M-pyrifera_M_contig114986:349..5621622815665.7575274-CDS-M-pyrifera_M_contig114986:349..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114986 350..562 +
1692277511.8769097-CDS-M-pyrifera_M_contig114986:349..5621692277511.8769097-CDS-M-pyrifera_M_contig114986:349..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114986 350..562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114986.3113.1prot_M-pyrifera_M_contig114986.3113.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114986 350..562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114986.3113.1

>prot_M-pyrifera_M_contig114986.3113.1 ID=prot_M-pyrifera_M_contig114986.3113.1|Name=mRNA_M-pyrifera_M_contig114986.3113.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
NEEELAVTFLPIPADHCQPCGDSGKLATYRLVSKVNHLGSTMDSGHYTTD
SFNFGANRWSSFNDSVVDEVR
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mRNA from alignment at M-pyrifera_M_contig114986:350..562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114986.3113.1 ID=mRNA_M-pyrifera_M_contig114986.3113.1|Name=mRNA_M-pyrifera_M_contig114986.3113.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig114986:350..562+ (Macrocystis pyrifera P11B4 male)
AACGAGGAAGAGCTGGCTGTGACCTTTCTCCCCATCCCGGCAGACCACTG
CCAGCCATGCGGCGACTCTGGGAAGCTGGCTACCTACCGACTCGTCAGCA
AGGTCAACCACTTGGGCAGCACCATGGATAGCGGCCACTACACCACCGAC
AGCTTCAACTTCGGAGCAAATAGATGGAGCAGCTTCAACGACAGTGTTGT
GGATGAGGTTCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114986:350..562+

>mRNA_M-pyrifera_M_contig114986.3113.1 ID=mRNA_M-pyrifera_M_contig114986.3113.1|Name=mRNA_M-pyrifera_M_contig114986.3113.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig114986:350..562+ (Macrocystis pyrifera P11B4 male)
AACGAGGAAGAGCTGGCTGTGACCTTTCTCCCCATCCCGGCAGACCACTG
CCAGCCATGCGGCGACTCTGGGAAGCTGGCTACCTACCGACTCGTCAGCA
AGGTCAACCACTTGGGCAGCACCATGGATAGCGGCCACTACACCACCGAC
AGCTTCAACTTCGGAGCAAATAGATGGAGCAGCTTCAACGACAGTGTTGT
GGATGAGGTTCGTAACGAGGAAGAGCTGGCTGTGACCTTTCTCCCCATCC
CGGCAGACCACTGCCAGCCATGCGGCGACTCTGGGAAGCTGGCTACCTAC
CGACTCGTCAGCAAGGTCAACCACTTGGGCAGCACCATGGATAGCGGCCA
CTACACCACCGACAGCTTCAACTTCGGAGCAAATAGATGGAGCAGCTTCA
ACGACAGTGTTGTGGATGAGGTTCGT
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