mRNA_M-pyrifera_M_contig11497.3109.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11497.3109.1 vs. uniprot
Match: D8LGR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR7_ECTSI) HSP 1 Score: 266 bits (680), Expect = 1.720e-80 Identity = 228/488 (46.72%), Postives = 256/488 (52.46%), Query Frame = 1
Query: 1 MQELRSRHEHFRSSMFSSSADLAPKLQHGTGSSQGTGG-GRSMDSDRPPD--RIEAAILAGMAVDAERGANTFNTIALTPAHSADSPSYHGGGPGSRPSAGRVGGGGGNGPLFGHGSMPTPPRAMHGXXSGGYYSIDNXXXXXXXXXXXXGAYKQFHPPSVGGGGD-VGYLPRTVPADSAGARASLARSEDSHGGGGXXXXXXXXXXSGSSIG----DVFKYSRPPSGGGYGREAGRGIPPVHQVSVSSGASEEPRLEV--AGQEAFGPVESVSSAE---LLPDTPSGGGGXXXXXXXXCGDCAIDDVEVVDIAA--------QDFP--ETDGNETIVNPGSEGTSLNPTEGGDSTGVSLTPEGYDAPLDLPDGRHHISLAQFLEVMTGPGLRVRKHHRAGKGSSGLRVLRYAPEEDSLTWDSHKILGAAQHVLPMADVTKVLTQSGNRVVLMCVGGRDSYAVFEAANKDAGGVLAVGLERLRKRTVS 1395
++E RS HE FRSSMFS A A +L T S G GG G S DS RI+AAI A MA DA RGANTFN + LTP SA S GGPG A + GG Y D+ GAY+ ++P S GGGD GY+ R AD + A S+ S S G XXXXXXXXXX +G D F + R P H + A EPR V A + A+ P SV + E SGGG + D QD P TDG GS G +L+ GG GV+LTP GYD PL+LPDG HHISLA+FLEVMTGPGLRVRKHHRAGKGSSGLRVLRY E DSLTWDSHKILGAAQHVLPM+DV V Q G RVVLMCVGG+DSYAVFEAAN DA VL VGLERLR+RT S
Sbjct: 20 LEESRSLHEQFRSSMFS--ASKADRLNARTTISGGAGGAGSSCDSSESTTAARIDAAIKAAMAHDATRGANTFNRLNLTPEGSAASL----GGPGR--------------------GXXXXXXAPYPRMGGGDYYRDSGSGSGYA-----GAYRTYNPGSASGGGDSTGYMNRPPAADDSVATGSV--SHRSMSGXXXXXXXXXXXXXXXGVGAAAMDPF-FHRVPXXXXXXXXXXXXXXAPHHHQQQTRAIWEPRANVPPAPRPAWQPDPSVEAEEPEDTSSSASSGGGDARLAKLHPQPSRDFQEHHQADSMGAIAPPERPQDMPPVRTDG-------GSGGDALDHMGGG-GAGVALTPAGYDEPLELPDGCHHISLAKFLEVMTGPGLRVRKHHRAGKGSSGLRVLRYNAEGDSLTWDSHKILGAAQHVLPMSDVENVSMQPGKRVVLMCVGGKDSYAVFEAANDDAAAVLYVGLERLRERTQS 465
BLAST of mRNA_M-pyrifera_M_contig11497.3109.1 vs. uniprot
Match: A0A6H5J9D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9D1_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 8.860e-5 Identity = 43/87 (49.43%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 1 MQELRSRHEHFRSSMFSSSADLAPKLQHGTGSSQGTGGGR----SMDSDRPPDRIEAAILAGMAVDAERGANTFNTIALTPAHSADS 249
++E R+ HE FRSSMFS A A L T S G GG S +S RI+AAI A MA DA RGA TFN + LTP SA S
Sbjct: 20 LEESRTLHEQFRSSMFS--ASRADPLNPRTTISAGPGGADRYCDSSESSTSAARIDAAIKAAMANDANRGATTFNHLNLTPEGSAAS 104 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11497.3109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11497.3109.1 >prot_M-pyrifera_M_contig11497.3109.1 ID=prot_M-pyrifera_M_contig11497.3109.1|Name=mRNA_M-pyrifera_M_contig11497.3109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=465bp MQELRSRHEHFRSSMFSSSADLAPKLQHGTGSSQGTGGGRSMDSDRPPDRback to top mRNA from alignment at M-pyrifera_M_contig11497:155..4421+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11497.3109.1 ID=mRNA_M-pyrifera_M_contig11497.3109.1|Name=mRNA_M-pyrifera_M_contig11497.3109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4267bp|location=Sequence derived from alignment at M-pyrifera_M_contig11497:155..4421+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11497:155..4421+ >mRNA_M-pyrifera_M_contig11497.3109.1 ID=mRNA_M-pyrifera_M_contig11497.3109.1|Name=mRNA_M-pyrifera_M_contig11497.3109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2790bp|location=Sequence derived from alignment at M-pyrifera_M_contig11497:155..4421+ (Macrocystis pyrifera P11B4 male)back to top |