mRNA_M-pyrifera_M_contig114959.3105.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114959.3105.1
Unique NamemRNA_M-pyrifera_M_contig114959.3105.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: UPI000C9C8876 (DeoR/GlpR family DNA-binding transcription regulator n=1 Tax=Pseudovibrio exalbescens TaxID=197461 RepID=UPI000C9C8876)

HSP 1 Score: 62.8 bits (151), Expect = 1.880e-11
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISGR 171
            D   R MDFD+ K+AVKKAA+  SD+ +LLAT+SKFGRT    +  ++ FDEVISG+
Sbjct:   33 DDKGRVMDFDLSKIAVKKAALAISDRKLLLATQSKFGRTALSTVAMISEFDEVISGQ 89
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BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: A0A1U7JF87_9HYPH (HTH deoR-type domain-containing protein n=3 Tax=Pseudovibrio exalbescens TaxID=197461 RepID=A0A1U7JF87_9HYPH)

HSP 1 Score: 62.8 bits (151), Expect = 2.210e-10
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISGR 171
            D   R MDFD+ K+AVKKAA+  SD+ +LLAT+SKFGRT    +  ++ FDEVISG+
Sbjct:  170 DDKGRVMDFDLSKIAVKKAALAISDRKLLLATQSKFGRTALSTVAMISEFDEVISGQ 226
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BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: A0A5D0W0L3_9RHOB (DeoR/GlpR transcriptional regulator n=1 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A5D0W0L3_9RHOB)

HSP 1 Score: 57.0 bits (136), Expect = 3.750e-8
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISG 168
            D+  R MDFD+ K+AVKKAAM  + + +LLAT SKFGR     I  L+ FD VI G
Sbjct:  184 DEKGRVMDFDLSKIAVKKAAMAAASERLLLATPSKFGRAALSTIAMLSEFDHVIDG 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: UPI00146E90A9 (DeoR/GlpR family DNA-binding transcription regulator n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146E90A9)

HSP 1 Score: 56.6 bits (135), Expect = 4.640e-8
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISGR 171
            D  +R MDFD+ K+AVK+AAM  + + +LLAT  KFGR     I  L  FD VI GR
Sbjct:  180 DDKERVMDFDLSKIAVKRAAMASATRTMLLATPDKFGRAALATIAPLQDFDHVIDGR 236
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BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: UPI001FCC555F (DeoR/GlpR family DNA-binding transcription regulator n=1 Tax=Labrenzia sp. 011 TaxID=2171494 RepID=UPI001FCC555F)

HSP 1 Score: 56.2 bits (134), Expect = 4.790e-8
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISG 168
            D   R MDFD+ K+AVKKAAM  +D+ +LLAT SKF RT    I  L+ F++VI G
Sbjct:  129 DAKGRVMDFDLSKIAVKKAAMAAADENLLLATPSKFNRTALSTIAMLSDFNQVIDG 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: A0A2T7HFC6_9HYPH (DeoR/GlpR transcriptional regulator n=1 Tax=Labrenzia sp. 011 TaxID=2171494 RepID=A0A2T7HFC6_9HYPH)

HSP 1 Score: 56.2 bits (134), Expect = 7.380e-8
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISG 168
            D   R MDFD+ K+AVKKAAM  +D+ +LLAT SKF RT    I  L+ F++VI G
Sbjct:  184 DAKGRVMDFDLSKIAVKKAAMAAADENLLLATPSKFNRTALSTIAMLSDFNQVIDG 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: UPI001E3BF09D (DeoR/GlpR family DNA-binding transcription regulator n=1 Tax=Tropicimonas sp. IMCC34011 TaxID=2248759 RepID=UPI001E3BF09D)

HSP 1 Score: 55.8 bits (133), Expect = 8.670e-8
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISG 168
            D   R MDFD+ K+AVKKAAM  + +  L+AT SKFGRT      D++ FD VI G
Sbjct:  168 DVDGRVMDFDLSKIAVKKAAMNAATRKFLIATPSKFGRTALSAFADVSDFDAVIDG 223
[Close]
BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: A0A1Y5TW67_9RHOB (Glycerol-3-phosphate regulon repressor n=1 Tax=Roseisalinus antarcticus TaxID=254357 RepID=A0A1Y5TW67_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 9.820e-8
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVIS 165
            D++ R MDFD+ K+AVK+AAM  S +++LL+T+SKF RT   KI D+  F  V++
Sbjct:  184 DETGRVMDFDLSKIAVKRAAMAASARSMLLSTRSKFDRTALGKIADIGDFSAVVT 238
[Close]
BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: A0A1M7NR24_9HYPH (Transcriptional regulator, DeoR family n=1 Tax=Roseibium suaedae TaxID=735517 RepID=A0A1M7NR24_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 1.250e-7
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISG 168
            D   R MDF++ K+A+KKAAM  + + +LLAT SKFGRT      D++ FD VI G
Sbjct:  184 DTDGRVMDFNLSKIAIKKAAMAAATRKLLLATPSKFGRTAVSAFADVSDFDAVIDG 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Match: UPI001BCD1567 (DeoR/GlpR family DNA-binding transcription regulator n=2 Tax=Roseibium polysiphoniae TaxID=2571221 RepID=UPI001BCD1567)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-7
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 DKSDRAMDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISGR 171
            D+  R MDFD+ K+AVKKAAM  ++ ++LLAT SKFGRT    +  L  F  V++G+
Sbjct:  184 DERGRVMDFDMSKIAVKKAAMAAAENSLLLATPSKFGRTALSTVAALDDFTHVLTGQ 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114959.3105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
UPI000C9C88761.880e-1156.14DeoR/GlpR family DNA-binding transcription regulat... [more]
A0A1U7JF87_9HYPH2.210e-1056.14HTH deoR-type domain-containing protein n=3 Tax=Ps... [more]
A0A5D0W0L3_9RHOB3.750e-853.57DeoR/GlpR transcriptional regulator n=1 Tax=Rhodob... [more]
UPI00146E90A94.640e-850.88DeoR/GlpR family DNA-binding transcription regulat... [more]
UPI001FCC555F4.790e-853.57DeoR/GlpR family DNA-binding transcription regulat... [more]
A0A2T7HFC6_9HYPH7.380e-853.57DeoR/GlpR transcriptional regulator n=1 Tax=Labren... [more]
UPI001E3BF09D8.670e-851.79DeoR/GlpR family DNA-binding transcription regulat... [more]
A0A1Y5TW67_9RHOB9.820e-849.09Glycerol-3-phosphate regulon repressor n=1 Tax=Ros... [more]
A0A1M7NR24_9HYPH1.250e-750.00Transcriptional regulator, DeoR family n=1 Tax=Ros... [more]
UPI001BCD15671.310e-749.12DeoR/GlpR family DNA-binding transcription regulat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114959contigM-pyrifera_M_contig114959:395..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.3196487-CDS-M-pyrifera_M_contig114959:394..5501622815665.3196487-CDS-M-pyrifera_M_contig114959:394..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114959 395..550 -
1692277511.6534402-CDS-M-pyrifera_M_contig114959:394..5501692277511.6534402-CDS-M-pyrifera_M_contig114959:394..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114959 395..550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.3320873-UTR-M-pyrifera_M_contig114959:550..5681622815665.3320873-UTR-M-pyrifera_M_contig114959:550..568Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114959 551..568 -
1692277511.6712677-UTR-M-pyrifera_M_contig114959:550..5681692277511.6712677-UTR-M-pyrifera_M_contig114959:550..568Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114959 551..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114959.3105.1prot_M-pyrifera_M_contig114959.3105.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114959 395..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114959.3105.1

>prot_M-pyrifera_M_contig114959.3105.1 ID=prot_M-pyrifera_M_contig114959.3105.1|Name=mRNA_M-pyrifera_M_contig114959.3105.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MDFDVRKVAVKKAAMMGSDKAVLLATKSKFGRTGRFKINDLAAFDEVISG
R*
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mRNA from alignment at M-pyrifera_M_contig114959:395..568-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114959.3105.1 ID=mRNA_M-pyrifera_M_contig114959.3105.1|Name=mRNA_M-pyrifera_M_contig114959.3105.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig114959:395..568- (Macrocystis pyrifera P11B4 male)
GACAAGAGCGACCGCGCGATGGATTTCGACGTCAGGAAGGTGGCCGTCAA
GAAGGCGGCGATGATGGGCTCGGACAAGGCGGTGCTGCTGGCCACGAAAT
CGAAGTTCGGGCGCACGGGACGATTCAAGATCAACGATCTTGCGGCCTTT
GATGAGGTGATATCGGGCCGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114959:395..568-

>mRNA_M-pyrifera_M_contig114959.3105.1 ID=mRNA_M-pyrifera_M_contig114959.3105.1|Name=mRNA_M-pyrifera_M_contig114959.3105.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig114959:395..568- (Macrocystis pyrifera P11B4 male)
ATGGATTTCGACGTCAGGAAGGTGGCCGTCAAGAAGGCGGCGATGATGGG
CTCGGACAAGGCGGTGCTGCTGGCCACGAAATCGAAGTTCGGGCGCACGG
GACGATTCAAGATCAACGATCTTGCGGCCTTTGATGAGGTGATATCGGGC
CGGTAAATGGATTTCGACGTCAGGAAGGTGGCCGTCAAGAAGGCGGCGAT
GATGGGCTCGGACAAGGCGGTGCTGCTGGCCACGAAATCGAAGTTCGGGC
GCACGGGACGATTCAAGATCAACGATCTTGCGGCCTTTGATGAGGTGATA
TCGGGCCGGTAA
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