mRNA_M-pyrifera_M_contig114955.3103.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114955.3103.1
Unique NamemRNA_M-pyrifera_M_contig114955.3103.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: A0A6L8I3I3_9RHOB (Extracellular solute-binding protein n=3 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A6L8I3I3_9RHOB)

HSP 1 Score: 227 bits (578), Expect = 9.700e-71
Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNNADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVW 369
            TGGFA GIPANAPN+EAAFLF+QY+T+K GDQRMVELGGDPVRISTLQNN + FD+Y +VAEQLPCADPDWRPLIPEWNE+NIDVLGQALT+VITTD PIQPIMD ANE+ RAIMEREGYY W
Sbjct:  311 TGGFAMGIPANAPNREAAFLFIQYMTNKAGDQRMVELGGDPVRISTLQNNTEGFDDYPIVAEQLPCADPDWRPLIPEWNEINIDVLGQALTQVITTDDPIQPIMDKANEELRAIMEREGYYTW 433          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: UPI0010A5D29E (extracellular solute-binding protein n=1 Tax=Primorskyibacter sp. XY-301 TaxID=2562685 RepID=UPI0010A5D29E)

HSP 1 Score: 226 bits (577), Expect = 1.560e-70
Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNNADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVW 369
            TGGFA GIP NAPNKEAAFLF+QY+TSK GDQRMVELGGDP+RISTL+NNAD++ +Y+V AEQLPCADPDWRPLIPEWNE+NIDVLGQALT+VITTD PIQPIMD ANEK RAIMEREGYY W
Sbjct:  316 TGGFALGIPDNAPNKEAAFLFIQYMTSKAGDQRMVELGGDPIRISTLKNNADQYPDYAVTAEQLPCADPDWRPLIPEWNEINIDVLGQALTQVITTDDPIQPIMDEANEKLRAIMEREGYYTW 438          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: UPI0019805E37 (extracellular solute-binding protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0019805E37)

HSP 1 Score: 223 bits (569), Expect = 2.660e-69
Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNNADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVW 369
            TGGFA GIPAN+ NKEAAFLF+QYITSK GD+RMVELGGDP+R+ST+ + AD+F EY VVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVIT+DKPIQPIMDAA EKARAIMEREGYY W
Sbjct:  321 TGGFAVGIPANSQNKEAAFLFIQYITSKAGDKRMVELGGDPIRLSTIAHFADQFPEYPVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITSDKPIQPIMDAAAEKARAIMEREGYYAW 443          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: A0A5B8LUZ4_9HYPH (Extracellular solute-binding protein n=2 Tax=Devosia ginsengisoli TaxID=400770 RepID=A0A5B8LUZ4_9HYPH)

HSP 1 Score: 203 bits (516), Expect = 2.440e-61
Identity = 93/125 (74.40%), Postives = 108/125 (86.40%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNNADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVWQN 375
            TGGFA GIPAN+ N++AAFLF+QY+TSK GDQR+VELGGDP+R+STL+ N   F EY  V EQLPCAD DWRPLIPE+NELN+D+LGQALTE+ITTD PIQPIMDAA EKARA+MER GYY W +
Sbjct:  321 TGGFALGIPANSQNQQAAFLFIQYMTSKLGDQRIVELGGDPIRMSTLEANVGNFAEYQTVLEQLPCADADWRPLIPEYNELNVDILGQALTEIITTDSPIQPIMDAAVEKARAMMERAGYYAWND 445          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: A0A845CH79_9BACT (Extracellular solute-binding protein n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A845CH79_9BACT)

HSP 1 Score: 191 bits (486), Expect = 6.760e-57
Identity = 91/127 (71.65%), Postives = 109/127 (85.83%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNN--ADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVWQN 375
            TGGFA GIPAN+ NKEAAFLF+Q++TSKK D+R+VELGGDP+RISTL +   + KF EY V+AEQL CADPDWRPLIPEWNELNI VLG AL EV+T+DKPI+P++D A  KARA+M+REGYY WQ+
Sbjct:  321 TGGFAMGIPANSKNKEAAFLFIQWMTSKKADRRIVELGGDPIRISTLTDPVFSKKFPEYPVIAEQLKCADPDWRPLIPEWNELNIKVLGIALHEVLTSDKPIKPLLDKAAVKARAVMKREGYYRWQS 447          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: A0A7C5KR28_9CHLR (Extracellular solute-binding protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5KR28_9CHLR)

HSP 1 Score: 141 bits (356), Expect = 1.840e-40
Identity = 65/127 (51.18%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNNA--DKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVWQN 375
            TGGFA GIP N+ +KEAAFLF+Q++TSKKGD+ +VE GGDPVR+ST+ +     +F EY V+ EQL CA+ +WRPLIPEW E+N  ++G  L E ++ +  +   + AA  + + +MER GYY W N
Sbjct:   42 TGGFAMGIPNNSAHKEAAFLFIQWMTSKKGDRLIVEAGGDPVRMSTMADPELQKRFPEYPVILEQLKCANENWRPLIPEWGEINAPIMGVNLGEYVSGEADLDAALGAAKSQIQDVMERAGYYTWAN 168          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: A0A6L3F092_9CHLR (Sugar ABC transporter substrate-binding protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3F092_9CHLR)

HSP 1 Score: 134 bits (338), Expect = 3.940e-34
Identity = 62/123 (50.41%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNNA--DKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYY 363
            TGGFA GI  N+ NK+AA+LFLQY+TSK+GD++MVE GGDPVR+STL + A  ++F EY V+ EQL CA+ +WRPLIPEW E+N  ++G+ +   +      +  +  A  +   +MER GYY
Sbjct:  382 TGGFAMGIAENSANKDAAYLFLQYMTSKEGDRKMVEAGGDPVRLSTLADPALQERFPEYPVILEQLACANENWRPLIPEWGEINAQIMGEQIGAYLNDAIDAETALATAKTQTEEVMERAGYY 504          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: UPI0010A5A724 (extracellular solute-binding protein n=1 Tax=Primorskyibacter sp. XY-301 TaxID=2562685 RepID=UPI0010A5A724)

HSP 1 Score: 131 bits (329), Expect = 7.770e-34
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQN---NADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVWQ 372
            TGGF  GIPANA NKEAAFL +Q++TSK+GD+ +   GG+P R ST ++   NA KF   +   E L  ADPDWRP+IP W ++N D LG  L++V+T D  IQ  +D   E+ RA+ME  GYY WQ
Sbjct:  317 TGGFGIGIPANAENKEAAFLLMQWLTSKQGDKLVALAGGNPSRFSTHEDAEVNA-KFPHMATFGEALKHADPDWRPIIPVWGKINAD-LGTTLSKVLTEDLDIQEALDGVAERTRAVMEEAGYYTWQ 441          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: A0A1I3RCU1_9RHOB (Carbohydrate ABC transporter substrate-binding protein, CUT1 family n=2 Tax=Jannaschia TaxID=188905 RepID=A0A1I3RCU1_9RHOB)

HSP 1 Score: 129 bits (323), Expect = 5.740e-33
Identity = 66/127 (51.97%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQN---NADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVWQ 372
            TGGF  GIP NAPNKEAAFL LQ++TSK+GD  +   GG+P R ST QN   NA KF   +   E L  ADPDWRP+IP W ++N D+ G  +++V+T     Q  +D   E+ RAIME  GYY WQ
Sbjct:  316 TGGFGIGIPRNAPNKEAAFLLLQWLTSKQGDLAVAMEGGNPSRFSTYQNAELNA-KFPYSATFGEALQYADPDWRPIIPVWGQINADI-GTTMSQVLTEGLDPQEALDGVAERTRAIMEEAGYYSWQ 440          
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Match: E2CHW8_9HYPH (Extracellular solute-binding protein n=1 Tax=Roseibium sp. TrichSKD4 TaxID=744980 RepID=E2CHW8_9HYPH)

HSP 1 Score: 128 bits (322), Expect = 8.120e-33
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNNA--DKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPIQPIMDAANEKARAIMEREGYYVWQ 372
            TGGF  GIPANA +KEAAFL +Q++TSK+GD+ +   GG+P R ST Q+    +KF   +   E L  ADPDWRP+IP W ++N D LG  L++V+T D  +Q  +D   E+ R +M+  GYY WQ
Sbjct:  318 TGGFGIGIPANAEHKEAAFLLMQWLTSKQGDKLVAMAGGNPSRFSTHQDEDVNEKFPHMATFGEALKHADPDWRPIIPVWGKINAD-LGTTLSKVLTEDLDVQEALDGVAERTRTVMDEAGYYTWQ 442          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114955.3103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L8I3I3_9RHOB9.700e-7184.55Extracellular solute-binding protein n=3 Tax=uncla... [more]
UPI0010A5D29E1.560e-7084.55extracellular solute-binding protein n=1 Tax=Primo... [more]
UPI0019805E372.660e-6985.37extracellular solute-binding protein n=1 Tax=Pelag... [more]
A0A5B8LUZ4_9HYPH2.440e-6174.40Extracellular solute-binding protein n=2 Tax=Devos... [more]
A0A845CH79_9BACT6.760e-5771.65Extracellular solute-binding protein n=1 Tax=Nitro... [more]
A0A7C5KR28_9CHLR1.840e-4051.18Extracellular solute-binding protein n=1 Tax=Anaer... [more]
A0A6L3F092_9CHLR3.940e-3450.41Sugar ABC transporter substrate-binding protein (F... [more]
UPI0010A5A7247.770e-3451.97extracellular solute-binding protein n=1 Tax=Primo... [more]
A0A1I3RCU1_9RHOB5.740e-3351.97Carbohydrate ABC transporter substrate-binding pro... [more]
E2CHW8_9HYPH8.120e-3348.41Extracellular solute-binding protein n=1 Tax=Rosei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114955contigM-pyrifera_M_contig114955:3..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score128.6
Seed ortholog evalue2e-27
Seed eggNOG ortholog744980.TRICHSKD4_2662
KEGG koko:K02027
KEGG TC3.A.1.1
KEGG ModuleM00207
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC-type sugar transport system periplasmic component
EggNOG OGs1MUNZ@1224,2U05K@28211,COG1653@1,COG1653@2
COG Functional cat.G
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.234805-CDS-M-pyrifera_M_contig114955:2..3801622815665.234805-CDS-M-pyrifera_M_contig114955:2..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114955 3..380 +
1692277511.630661-CDS-M-pyrifera_M_contig114955:2..3801692277511.630661-CDS-M-pyrifera_M_contig114955:2..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114955 3..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114955.3103.1prot_M-pyrifera_M_contig114955.3103.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114955 3..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114955.3103.1

>prot_M-pyrifera_M_contig114955.3103.1 ID=prot_M-pyrifera_M_contig114955.3103.1|Name=mRNA_M-pyrifera_M_contig114955.3103.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
TGGFAAGIPANAPNKEAAFLFLQYITSKKGDQRMVELGGDPVRISTLQNN
ADKFDEYSVVAEQLPCADPDWRPLIPEWNELNIDVLGQALTEVITTDKPI
QPIMDAANEKARAIMEREGYYVWQN*
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mRNA from alignment at M-pyrifera_M_contig114955:3..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114955.3103.1 ID=mRNA_M-pyrifera_M_contig114955.3103.1|Name=mRNA_M-pyrifera_M_contig114955.3103.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig114955:3..380+ (Macrocystis pyrifera P11B4 male)
ACCGGCGGTTTTGCAGCCGGCATTCCGGCCAATGCGCCCAACAAGGAAGC AGCATTCCTTTTCCTGCAATACATCACCTCGAAAAAGGGCGATCAGCGCA TGGTCGAGCTGGGTGGTGACCCGGTTCGCATTTCGACGCTGCAAAACAAT GCCGACAAGTTCGATGAGTATTCGGTTGTTGCAGAGCAGCTGCCTTGTGC TGATCCCGACTGGCGTCCGCTCATTCCGGAATGGAACGAGTTGAACATCG ATGTTCTGGGACAGGCGCTGACCGAGGTCATCACCACGGACAAGCCGATC CAGCCGATCATGGACGCAGCCAATGAAAAGGCCCGCGCGATCATGGAACG CGAAGGCTACTACGTCTGGCAGAATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114955:3..380+

>mRNA_M-pyrifera_M_contig114955.3103.1 ID=mRNA_M-pyrifera_M_contig114955.3103.1|Name=mRNA_M-pyrifera_M_contig114955.3103.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig114955:3..380+ (Macrocystis pyrifera P11B4 male)
ACCGGCGGTTTTGCAGCCGGCATTCCGGCCAATGCGCCCAACAAGGAAGC
AGCATTCCTTTTCCTGCAATACATCACCTCGAAAAAGGGCGATCAGCGCA
TGGTCGAGCTGGGTGGTGACCCGGTTCGCATTTCGACGCTGCAAAACAAT
GCCGACAAGTTCGATGAGTATTCGGTTGTTGCAGAGCAGCTGCCTTGTGC
TGATCCCGACTGGCGTCCGCTCATTCCGGAATGGAACGAGTTGAACATCG
ATGTTCTGGGACAGGCGCTGACCGAGGTCATCACCACGGACAAGCCGATC
CAGCCGATCATGGACGCAGCCAATGAAAAGGCCCGCGCGATCATGGAACG
CGAAGGCTACTACGTCTGGCAGAATTAAACCGGCGGTTTTGCAGCCGGCA
TTCCGGCCAATGCGCCCAACAAGGAAGCAGCATTCCTTTTCCTGCAATAC
ATCACCTCGAAAAAGGGCGATCAGCGCATGGTCGAGCTGGGTGGTGACCC
GGTTCGCATTTCGACGCTGCAAAACAATGCCGACAAGTTCGATGAGTATT
CGGTTGTTGCAGAGCAGCTGCCTTGTGCTGATCCCGACTGGCGTCCGCTC
ATTCCGGAATGGAACGAGTTGAACATCGATGTTCTGGGACAGGCGCTGAC
CGAGGTCATCACCACGGACAAGCCGATCCAGCCGATCATGGACGCAGCCA
ATGAAAAGGCCCGCGCGATCATGGAACGCGAAGGCTACTACGTCTGGCAG
AATTAA
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