mRNA_M-pyrifera_M_contig114921.3099.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114921.3099.1
Unique NamemRNA_M-pyrifera_M_contig114921.3099.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: D8LDN0_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN0_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.070e-17
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAIG 135
            VCF RKV+CTLVPCGHHCCCL CA +F+ CPVCR  V +KI+AI 
Sbjct:  117 VCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAIS 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: D7FYF6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 3.060e-16
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAI 132
            VCF  +V+CTLVPCGHHCCC+ CA KF +CPVCR  V  KIK I
Sbjct:   40 VCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTI 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.100e-15
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAIG 135
            VCF RKV+CTLVPCGHHCCCL CA +F+ CPVCR  V +KI+AI 
Sbjct:  633 VCFERKVDCTLVPCGHHCCCLTCAAQFEQCPVCRADVEQKIRAIS 677
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.770e-15
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAI 132
            VCF  +V+CTLVPCGHHCCC+ CA KF +CPVCR  V  KIK I
Sbjct:  746 VCFDNEVDCTLVPCGHHCCCITCASKFSLCPVCRTTVTHKIKTI 789
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.350e-14
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEK-FDMCPVCRLKVVRKIKAIGA 138
            VCF R VNCT +PCGHHCCC+ CAE  F++CPVCR+ + +KIK I A
Sbjct:  927 VCFDRPVNCTFMPCGHHCCCMPCAESMFNLCPVCRVAIDKKIKTISA 973
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.030e-13
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAE-KFDMCPVCRLKVVRKIKAIGA 138
            VCF R VNCT VPCGHHCCC+ CAE K ++CPVC + + +KIK I A
Sbjct:  852 VCFDRPVNCTFVPCGHHCCCMPCAESKLNLCPVCGVAIDKKIKTISA 898
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: A0A6L5CFK6_9INSE (RING-type domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CFK6_9INSE)

HSP 1 Score: 55.8 bits (133), Expect = 4.220e-8
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAI 132
            VCF  ++N  L+PCGH   C  CA +F  CPVCR +V+ KIKAI
Sbjct:  161 VCFENELNVVLLPCGHMVVCSNCAPRFSSCPVCRQRVIAKIKAI 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: A0A061D796_BABBI (RING-type domain-containing protein n=1 Tax=Babesia bigemina TaxID=5866 RepID=A0A061D796_BABBI)

HSP 1 Score: 56.6 bits (135), Expect = 4.360e-8
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRK 120
            VCF +++NC L PCGH   C  CAE F +CP+CR K+VR+
Sbjct:  802 VCFEKRINCLLNPCGHFNFCSVCAESFAVCPICRRKIVRR 841
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: A0A2J7RK65_9NEOP (RING-type domain-containing protein n=6 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RK65_9NEOP)

HSP 1 Score: 55.8 bits (133), Expect = 8.150e-8
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAI 132
            VC   K    LVPCGH CCC+ CAEK   CP+CR  + R+I+AI
Sbjct:  578 VCMDEKCEIILVPCGHMCCCIKCAEKVVDCPMCRNVIERRIRAI 621
[Close]
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Match: R7UNB4_CAPTE (RING-type domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UNB4_CAPTE)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-7
Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    1 VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAIGA 138
            +C   KV  T +PCGH C CL+C E+   CP+CR K++ ++K   +
Sbjct:   25 ICMIEKVMYTFLPCGHLCTCLSCGEQVSHCPLCRTKILGRVKTFSS 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114921.3099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LDN0_ECTSI5.070e-1771.11Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
D7FYF6_ECTSI3.060e-1668.18RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTC5_9PHAE1.100e-1571.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTY3_9PHAE9.770e-1568.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU5_9PHAE6.350e-1463.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI3.030e-1363.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6L5CFK6_9INSE4.220e-854.55RING-type domain-containing protein n=1 Tax=Epheme... [more]
A0A061D796_BABBI4.360e-855.00RING-type domain-containing protein n=1 Tax=Babesi... [more]
A0A2J7RK65_9NEOP8.150e-854.55RING-type domain-containing protein n=6 Tax=Crypto... [more]
R7UNB4_CAPTE2.310e-741.30RING-type domain-containing protein (Fragment) n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114921contigM-pyrifera_M_contig114921:295..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue8.8e-13
Seed eggNOG ortholog2880.D8LDN0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Zinc finger, C3HC4 type (RING finger)
EggNOG OGs2E5R0@1,2SCHW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.0698025-CDS-M-pyrifera_M_contig114921:294..4351622815665.0698025-CDS-M-pyrifera_M_contig114921:294..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114921 295..435 -
1692277511.5598905-CDS-M-pyrifera_M_contig114921:294..4351692277511.5598905-CDS-M-pyrifera_M_contig114921:294..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114921 295..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114921.3099.1prot_M-pyrifera_M_contig114921.3099.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114921 295..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114921.3099.1

>prot_M-pyrifera_M_contig114921.3099.1 ID=prot_M-pyrifera_M_contig114921.3099.1|Name=mRNA_M-pyrifera_M_contig114921.3099.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
VCFSRKVNCTLVPCGHHCCCLACAEKFDMCPVCRLKVVRKIKAIGA*
back to top

mRNA from alignment at M-pyrifera_M_contig114921:295..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114921.3099.1 ID=mRNA_M-pyrifera_M_contig114921.3099.1|Name=mRNA_M-pyrifera_M_contig114921.3099.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig114921:295..435- (Macrocystis pyrifera P11B4 male)
GTGTGCTTCAGCCGGAAAGTGAACTGCACGCTAGTCCCGTGCGGCCACCA
CTGCTGCTGCCTCGCCTGCGCGGAAAAATTCGATATGTGTCCAGTCTGCC
GCCTCAAGGTCGTAAGGAAGATCAAGGCCATCGGTGCCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114921:295..435-

>mRNA_M-pyrifera_M_contig114921.3099.1 ID=mRNA_M-pyrifera_M_contig114921.3099.1|Name=mRNA_M-pyrifera_M_contig114921.3099.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig114921:295..435- (Macrocystis pyrifera P11B4 male)
GTGTGCTTCAGCCGGAAAGTGAACTGCACGCTAGTCCCGTGCGGCCACCA
CTGCTGCTGCCTCGCCTGCGCGGAAAAATTCGATATGTGTCCAGTCTGCC
GCCTCAAGGTCGTAAGGAAGATCAAGGCCATCGGTGCCTGAGTGTGCTTC
AGCCGGAAAGTGAACTGCACGCTAGTCCCGTGCGGCCACCACTGCTGCTG
CCTCGCCTGCGCGGAAAAATTCGATATGTGTCCAGTCTGCCGCCTCAAGG
TCGTAAGGAAGATCAAGGCCATCGGTGCCTGA
back to top