mRNA_M-pyrifera_M_contig114822.3083.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114822.3083.1
Unique NamemRNA_M-pyrifera_M_contig114822.3083.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114822.3083.1 vs. uniprot
Match: A0A517W8G3_9PLAN (Putative diguanylate cyclase YegE n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517W8G3_9PLAN)

HSP 1 Score: 84.7 bits (208), Expect = 1.630e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM 126
            VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM
Sbjct:  270 VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM 311
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BLAST of mRNA_M-pyrifera_M_contig114822.3083.1 vs. uniprot
Match: A0A517Q312_9PLAN (Response regulator PleD n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q312_9PLAN)

HSP 1 Score: 80.1 bits (196), Expect = 8.690e-17
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM 126
            VPGDSAEL LERGAHALTQSQK+GRNQLIIQDSHSYEHKRA+
Sbjct:  270 VPGDSAELVLERGAHALTQSQKRGRNQLIIQDSHSYEHKRAV 311
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BLAST of mRNA_M-pyrifera_M_contig114822.3083.1 vs. uniprot
Match: A0A517VC72_9PLAN (Putative diguanylate cyclase YegE n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VC72_9PLAN)

HSP 1 Score: 76.3 bits (186), Expect = 2.340e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM 126
            VPGDSAEL LERG HAL QSQKQGRNQLIIQDSHSYEHK+A+
Sbjct:  270 VPGDSAELVLERGLHALAQSQKQGRNQLIIQDSHSYEHKQAV 311
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BLAST of mRNA_M-pyrifera_M_contig114822.3083.1 vs. uniprot
Match: A0A355G7S1_9PLAN (GGDEF domain-containing protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355G7S1_9PLAN)

HSP 1 Score: 75.9 bits (185), Expect = 3.250e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM 126
            VPGDSAEL LERG HAL QSQKQGRNQLIIQDSHSYEHK+A+
Sbjct:  270 VPGDSAELVLERGLHALMQSQKQGRNQLIIQDSHSYEHKQAI 311
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BLAST of mRNA_M-pyrifera_M_contig114822.3083.1 vs. uniprot
Match: A0A518I8B8_9PLAN (Putative diguanylate cyclase YegE n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I8B8_9PLAN)

HSP 1 Score: 73.2 bits (178), Expect = 3.220e-14
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM 126
            VPGDSAEL LERG+HAL +SQK+GRNQLIIQDSHSYEHK A+
Sbjct:  270 VPGDSAELVLERGSHALAKSQKKGRNQLIIQDSHSYEHKAAV 311
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BLAST of mRNA_M-pyrifera_M_contig114822.3083.1 vs. uniprot
Match: A0A517W138_9PLAN (Response regulator PleD n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W138_9PLAN)

HSP 1 Score: 67.4 bits (163), Expect = 4.240e-12
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM 126
            VPGDSAEL L+RG HAL +SQKQGRNQLIIQDSH+Y++K A+
Sbjct:  270 VPGDSAELILDRGLHALAKSQKQGRNQLIIQDSHAYKNKEAV 311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114822.3083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A517W8G3_9PLAN1.630e-18100.00Putative diguanylate cyclase YegE n=5 Tax=Gimesia ... [more]
A0A517Q312_9PLAN8.690e-1792.86Response regulator PleD n=2 Tax=Gimesia panareensi... [more]
A0A517VC72_9PLAN2.340e-1588.10Putative diguanylate cyclase YegE n=7 Tax=Planctom... [more]
A0A355G7S1_9PLAN3.250e-1588.10GGDEF domain-containing protein n=2 Tax=Planctomyc... [more]
A0A518I8B8_9PLAN3.220e-1483.33Putative diguanylate cyclase YegE n=2 Tax=Gimesia ... [more]
A0A517W138_9PLAN4.240e-1276.19Response regulator PleD n=2 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114822contigM-pyrifera_M_contig114822:440..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.3
Seed ortholog evalue4e-12
Seed eggNOG ortholog344747.PM8797T_17529
Preferred namecsrD
KEGG koko:K18765
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016043,GO:0016070,GO:0019219,GO:0019222,GO:0019439,GO:0022607,GO:0031323,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044464,GO:0046483,GO:0046700,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.diguanylate cyclase activity
EggNOG OGsCOG2199@1,COG2199@2
COG Functional cat.T
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.192599-CDS-M-pyrifera_M_contig114822:439..5681622815664.192599-CDS-M-pyrifera_M_contig114822:439..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114822 440..568 -
1692277511.1447988-CDS-M-pyrifera_M_contig114822:439..5681692277511.1447988-CDS-M-pyrifera_M_contig114822:439..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114822 440..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114822.3083.1prot_M-pyrifera_M_contig114822.3083.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114822 440..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114822.3083.1

>prot_M-pyrifera_M_contig114822.3083.1 ID=prot_M-pyrifera_M_contig114822.3083.1|Name=mRNA_M-pyrifera_M_contig114822.3083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
VPGDSAELALERGAHALTQSQKQGRNQLIIQDSHSYEHKRAM*
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mRNA from alignment at M-pyrifera_M_contig114822:440..568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114822.3083.1 ID=mRNA_M-pyrifera_M_contig114822.3083.1|Name=mRNA_M-pyrifera_M_contig114822.3083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig114822:440..568- (Macrocystis pyrifera P11B4 male)
GTACCCGGCGATTCAGCGGAACTGGCCCTCGAACGGGGCGCCCATGCTCT
GACTCAATCTCAGAAACAGGGGCGCAACCAGCTGATCATTCAGGACAGTC
ACTCGTACGAACACAAGCGGGCCATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114822:440..568-

>mRNA_M-pyrifera_M_contig114822.3083.1 ID=mRNA_M-pyrifera_M_contig114822.3083.1|Name=mRNA_M-pyrifera_M_contig114822.3083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig114822:440..568- (Macrocystis pyrifera P11B4 male)
GTACCCGGCGATTCAGCGGAACTGGCCCTCGAACGGGGCGCCCATGCTCT
GACTCAATCTCAGAAACAGGGGCGCAACCAGCTGATCATTCAGGACAGTC
ACTCGTACGAACACAAGCGGGCCATGTGAGTACCCGGCGATTCAGCGGAA
CTGGCCCTCGAACGGGGCGCCCATGCTCTGACTCAATCTCAGAAACAGGG
GCGCAACCAGCTGATCATTCAGGACAGTCACTCGTACGAACACAAGCGGG
CCATGTGA
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