mRNA_M-pyrifera_M_contig114809.3079.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114809.3079.1
Unique NamemRNA_M-pyrifera_M_contig114809.3079.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: A0A7S4IDL8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IDL8_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 7.800e-38
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:   10 RLCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            ++CRDY EGL WVMKYYYQGCASWTWFYPHHYAPF+SDLV L  L ++F   +PFRP+EQLMGVLPALSG ALP+
Sbjct:   25 QICRDYTEGLCWVMKYYYQGCASWTWFYPHHYAPFASDLVNLKDLEFDFKKGKPFRPFEQLMGVLPALSGDALPK 99
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: A0A8H4IVT6_9PEZI (5'-3' exoribonuclease n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4IVT6_9PEZI)

HSP 1 Score: 120 bits (300), Expect = 7.660e-30
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    7 YRLCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            +++ RDY+EGL WV+ YY+QGC SWTW+YPHHYAPF+ D V L S+  +F   QPFRPYEQLMGVLPA S HA+P+
Sbjct:  627 HKVARDYVEGLAWVLLYYFQGCPSWTWYYPHHYAPFAQDFVDLGSMELKFEKGQPFRPYEQLMGVLPAASNHAIPK 702
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: R1ER45_BOTPV (5'-3' exoribonuclease n=1 Tax=Botryosphaeria parva (strain UCR-NP2) TaxID=1287680 RepID=R1ER45_BOTPV)

HSP 1 Score: 119 bits (297), Expect = 1.950e-29
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    7 YRLCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            +++ RDY+EGL WV+ YY+QGC SWTW+YPHHYAPF+ D V L  +  +F   QPFRPYEQLMGVLPA S HA+PE
Sbjct:  625 HQVARDYVEGLAWVLLYYFQGCPSWTWYYPHHYAPFAQDFVDLDKMELKFEKGQPFRPYEQLMGVLPAASNHAIPE 700
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: K2R094_MACPH (5'-3' exoribonuclease n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2R094_MACPH)

HSP 1 Score: 118 bits (295), Expect = 3.620e-29
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    7 YRLCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            +++ RDY EGL WV+ YY+QGC SWTW+YPHHYAPF+ D V L  +  +F   QPFRPYEQLMGVLPA S HA+PE
Sbjct:  631 HQVARDYAEGLAWVLLYYFQGCPSWTWYYPHHYAPFAQDFVDLGKMELKFEKGQPFRPYEQLMGVLPAASNHAIPE 706
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: UPI001D05AE70 (uncharacterized protein n=1 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D05AE70)

HSP 1 Score: 116 bits (290), Expect = 1.710e-28
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:   10 RLCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            ++ RDY+EGL WV+ YY QGC SWTW+YPHHYAPF++D V L+ +  EF   +PF+P+EQLMGVLPA S HA+PE
Sbjct:  629 QVARDYVEGLAWVLLYYLQGCPSWTWYYPHHYAPFAADFVDLSDMKIEFSKGKPFKPFEQLMGVLPAASNHAIPE 703
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: A0A232LWG5_9EURO (5'-3' exoribonuclease n=1 Tax=Elaphomyces granulatus TaxID=519963 RepID=A0A232LWG5_9EURO)

HSP 1 Score: 115 bits (289), Expect = 2.340e-28
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    7 YRLCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            + + R Y+EGL WV+ YY+QGC+SWTWFYPHHYAPF++D V +++L + F   +PFRP+EQLMGVLPA S HA+PE
Sbjct:  610 HNVARAYVEGLQWVLLYYFQGCSSWTWFYPHHYAPFAADFVDISNLDFRFEKGKPFRPFEQLMGVLPASSNHAIPE 685
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: A0A2V0PGL9_9CHLO (Exoribonuclease n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGL9_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 3.220e-28
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   13 LCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            + R YIEGLVWVM+YYY G ASW W+YP+HYAPF+SDLV +  L  EF P +PF+P+ QLMGVLPA S H LPE
Sbjct:  812 IVRSYIEGLVWVMRYYYDGVASWNWYYPYHYAPFASDLVNIGGLEIEFDPGRPFKPFNQLMGVLPARSSHCLPE 885
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: A0A4S9XN90_AURPU (5'-3' exoribonuclease n=6 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S9XN90_AURPU)

HSP 1 Score: 115 bits (287), Expect = 4.330e-28
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   19 RDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALP 231
            RDY+EGL WV+ YY+QGCASWTW+YPHHYAPF++D V L  +  +F   +PFRPYEQLMGV+PA S H LP
Sbjct:  596 RDYVEGLAWVLLYYFQGCASWTWYYPHHYAPFAADFVDLKDMKLDFQKGKPFRPYEQLMGVMPARSNHVLP 666
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: A0A4S8XTM1_AURPU (5'-3' exoribonuclease n=31 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S8XTM1_AURPU)

HSP 1 Score: 115 bits (287), Expect = 4.360e-28
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   19 RDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALP 231
            RDY+EGL WV+ YY+QGCASWTW+YPHHYAPF++D V L  +  +F   +PFRPYEQLMGV+PA S H LP
Sbjct:  610 RDYVEGLAWVLLYYFQGCASWTWYYPHHYAPFAADFVDLKDMKLDFQKGKPFRPYEQLMGVMPARSNHVLP 680
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BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Match: R4XBL5_TAPDE (5'-3' exoribonuclease n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XBL5_TAPDE)

HSP 1 Score: 114 bits (285), Expect = 8.110e-28
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   13 LCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHYEFGPSQPFRPYEQLMGVLPALSGHALPE 234
            + RDY+EGL WV+ YYYQGC SWTWFYPHHYAPF+SD  Q++S+   F   +P RPYEQL+GV+P  S H LPE
Sbjct:  601 VARDYVEGLAWVLLYYYQGCHSWTWFYPHHYAPFASDFDQMSSMTINFSKGEPARPYEQLLGVMPVASNHVLPE 674
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114809.3079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IDL8_9EUKA7.800e-3876.00Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A8H4IVT6_9PEZI7.660e-3064.475'-3' exoribonuclease n=1 Tax=Botryosphaeria dothi... [more]
R1ER45_BOTPV1.950e-2964.475'-3' exoribonuclease n=1 Tax=Botryosphaeria parva... [more]
K2R094_MACPH3.620e-2964.475'-3' exoribonuclease n=1 Tax=Macrophomina phaseol... [more]
UPI001D05AE701.710e-2862.67uncharacterized protein n=1 Tax=Bacidia gigantensi... [more]
A0A232LWG5_9EURO2.340e-2861.845'-3' exoribonuclease n=1 Tax=Elaphomyces granulat... [more]
A0A2V0PGL9_9CHLO3.220e-2866.22Exoribonuclease n=1 Tax=Raphidocelis subcapitata T... [more]
A0A4S9XN90_AURPU4.330e-2866.205'-3' exoribonuclease n=6 Tax=Aureobasidium pullul... [more]
A0A4S8XTM1_AURPU4.360e-2866.205'-3' exoribonuclease n=31 Tax=Aureobasidium pullu... [more]
R4XBL5_TAPDE8.110e-2863.515'-3' exoribonuclease n=1 Tax=Taphrina deformans (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114809contigM-pyrifera_M_contig114809:335..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score120.9
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog310453.XP_007582526.1
Preferred nameRAT1
KEGG koko:K12619
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000150,GO:0000291,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004534,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006310,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0015631,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0030846,GO:0030847,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032774,GO:0032784,GO:0032785,GO:0032991,GO:0034243,GO:0034244,GO:0034428,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0042273,GO:0042325,GO:0042326,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045892,GO:0045934,GO:0045936,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0060255,GO:0061695,GO:0065007,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071046,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090503,GO:0090730,GO:0097159,GO:0097659,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901407,GO:1901408,GO:1901575,GO:1901576,GO:1902494,GO:1902555,GO:1902679,GO:1902911,GO:1903506,GO:1903507,GO:1905348,GO:1905354,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.XRN 5'-3' exonuclease N-terminus
EggNOG OGs201CF@147541,38E72@33154,3NW08@4751,3QJV0@4890,COG5049@1,KOG2044@2759
COG Functional cat.AL
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03021
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.0555973-CDS-M-pyrifera_M_contig114809:334..5681622815664.0555973-CDS-M-pyrifera_M_contig114809:334..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114809 335..568 +
1692277511.096829-CDS-M-pyrifera_M_contig114809:334..5681692277511.096829-CDS-M-pyrifera_M_contig114809:334..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114809 335..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114809.3079.1prot_M-pyrifera_M_contig114809.3079.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114809 335..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114809.3079.1

>prot_M-pyrifera_M_contig114809.3079.1 ID=prot_M-pyrifera_M_contig114809.3079.1|Name=mRNA_M-pyrifera_M_contig114809.3079.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
PWYRLCRDYIEGLVWVMKYYYQGCASWTWFYPHHYAPFSSDLVQLASLHY
EFGPSQPFRPYEQLMGVLPALSGHALPE
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mRNA from alignment at M-pyrifera_M_contig114809:335..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114809.3079.1 ID=mRNA_M-pyrifera_M_contig114809.3079.1|Name=mRNA_M-pyrifera_M_contig114809.3079.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig114809:335..568+ (Macrocystis pyrifera P11B4 male)
CCTTGGTACAGACTATGCAGAGACTACATCGAGGGCCTCGTGTGGGTGAT
GAAGTACTACTACCAAGGCTGCGCCTCATGGACTTGGTTCTACCCTCACC
ACTATGCTCCCTTCTCGTCAGACTTGGTCCAACTTGCCTCCCTCCACTAT
GAGTTCGGCCCCAGCCAACCCTTCCGGCCCTACGAGCAACTCATGGGAGT
GCTTCCGGCCCTCTCTGGTCACGCGTTGCCTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114809:335..568+

>mRNA_M-pyrifera_M_contig114809.3079.1 ID=mRNA_M-pyrifera_M_contig114809.3079.1|Name=mRNA_M-pyrifera_M_contig114809.3079.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig114809:335..568+ (Macrocystis pyrifera P11B4 male)
CCTTGGTACAGACTATGCAGAGACTACATCGAGGGCCTCGTGTGGGTGAT
GAAGTACTACTACCAAGGCTGCGCCTCATGGACTTGGTTCTACCCTCACC
ACTATGCTCCCTTCTCGTCAGACTTGGTCCAACTTGCCTCCCTCCACTAT
GAGTTCGGCCCCAGCCAACCCTTCCGGCCCTACGAGCAACTCATGGGAGT
GCTTCCGGCCCTCTCTGGTCACGCGTTGCCTGAGCCTTGGTACAGACTAT
GCAGAGACTACATCGAGGGCCTCGTGTGGGTGATGAAGTACTACTACCAA
GGCTGCGCCTCATGGACTTGGTTCTACCCTCACCACTATGCTCCCTTCTC
GTCAGACTTGGTCCAACTTGCCTCCCTCCACTATGAGTTCGGCCCCAGCC
AACCCTTCCGGCCCTACGAGCAACTCATGGGAGTGCTTCCGGCCCTCTCT
GGTCACGCGTTGCCTGAG
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