mRNA_M-pyrifera_M_contig114795.3074.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114795.3074.1
Unique NamemRNA_M-pyrifera_M_contig114795.3074.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114795.3074.1 vs. uniprot
Match: A0A7R9YA22_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA22_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 7.790e-5
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   31 RVALHVHAELGHGEQVYVVGNLAAFGSWEKGNGMALVTNPEEYPVWRTRTPVAVP 195
            ++++ V+A+L  G+ +++ G+    G +      ALVT PEEYPVWRT  P+ VP
Sbjct:   18 KLSVRVNAQLQRGQTLHISGSSPTLGRFVVNEAPALVTTPEEYPVWRTLHPLVVP 72
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114795.3074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9YA22_9STRA7.790e-540.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114795contigM-pyrifera_M_contig114795:2..205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.7548456-CDS-M-pyrifera_M_contig114795:1..2051622815663.7548456-CDS-M-pyrifera_M_contig114795:1..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114795 2..205 -
1692277510.94156-CDS-M-pyrifera_M_contig114795:1..2051692277510.94156-CDS-M-pyrifera_M_contig114795:1..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114795 2..205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114795.3074.1prot_M-pyrifera_M_contig114795.3074.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114795 2..205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114795.3074.1

>prot_M-pyrifera_M_contig114795.3074.1 ID=prot_M-pyrifera_M_contig114795.3074.1|Name=mRNA_M-pyrifera_M_contig114795.3074.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MFWTRQTPVCRVALHVHAELGHGEQVYVVGNLAAFGSWEKGNGMALVTNP
EEYPVWRTRTPVAVPPSS
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mRNA from alignment at M-pyrifera_M_contig114795:2..205-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114795.3074.1 ID=mRNA_M-pyrifera_M_contig114795.3074.1|Name=mRNA_M-pyrifera_M_contig114795.3074.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig114795:2..205- (Macrocystis pyrifera P11B4 male)
ATGTTTTGGACACGCCAGACGCCGGTGTGCAGGGTAGCGTTGCATGTGCA
TGCGGAGCTGGGCCACGGCGAGCAAGTGTACGTGGTGGGCAACTTGGCTG
CATTCGGCTCGTGGGAAAAAGGCAACGGCATGGCGCTGGTGACCAACCCG
GAGGAGTACCCGGTGTGGCGCACGCGTACGCCCGTTGCTGTGCCACCGAG
CAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114795:2..205-

>mRNA_M-pyrifera_M_contig114795.3074.1 ID=mRNA_M-pyrifera_M_contig114795.3074.1|Name=mRNA_M-pyrifera_M_contig114795.3074.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig114795:2..205- (Macrocystis pyrifera P11B4 male)
ATGTTTTGGACACGCCAGACGCCGGTGTGCAGGGTAGCGTTGCATGTGCA
TGCGGAGCTGGGCCACGGCGAGCAAGTGTACGTGGTGGGCAACTTGGCTG
CATTCGGCTCGTGGGAAAAAGGCAACGGCATGGCGCTGGTGACCAACCCG
GAGGAGTACCCGGTGTGGCGCACGCGTACGCCCGTTGCTGTGCCACCGAG
CAGCATGTTTTGGACACGCCAGACGCCGGTGTGCAGGGTAGCGTTGCATG
TGCATGCGGAGCTGGGCCACGGCGAGCAAGTGTACGTGGTGGGCAACTTG
GCTGCATTCGGCTCGTGGGAAAAAGGCAACGGCATGGCGCTGGTGACCAA
CCCGGAGGAGTACCCGGTGTGGCGCACGCGTACGCCCGTTGCTGTGCCAC
CGAGCAGC
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