mRNA_M-pyrifera_M_contig114792.3073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114792.3073.1
Unique NamemRNA_M-pyrifera_M_contig114792.3073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig114792.3073.1 vs. uniprot
Match: L8HDT2_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDT2_ACACA)

HSP 1 Score: 61.6 bits (148), Expect = 3.210e-8
Identity = 52/167 (31.14%), Postives = 69/167 (41.32%), Query Frame = 1 
Query:   10 AQLDEEAYQNTFGVSYPLTPDECTTDTFRFACLGVFLGCE---EVPLAALPGAKVVLPVPPCKSVCEAVAVGCESFLAAAGRDP--PDCE---EKTSTGLPLFPEENFSLAIGDQVVSFP-----------CNVPPDQDVDVHKTCPASFSDEDDDCGTPCPIPLYS 453
            A +D+ A   T  V     P EC +      C+G FL C+     PL  +         PPC+SVCEAV +GC +F  + G     PDC+     T T  P FP +      G Q V+ P           C  P   + D   +  AS  D    C  PCP P++S
Sbjct:   54 ASVDKRAANQT-AVMGAFFPPECRSPLVALTCMGSFLRCQFNSNFPLFDV--------YPPCRSVCEAVVLGCTAFFESQGMKKMLPDCDMIDNSTGTPFPAFPPD------GTQCVAMPPDMFVPYGEADCPYPLKFNYDDQDSFTASSYDPTQMCVMPCPNPMWS 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig114792.3073.1 vs. uniprot
Match: L8H7W4_ACACA (Frizzled/Smoothened family membrane region protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H7W4_ACACA)

HSP 1 Score: 55.8 bits (133), Expect = 3.270e-6
Identity = 45/157 (28.66%), Postives = 64/157 (40.76%), Query Frame = 1 
Query:   10 AQLDEEAYQNTFGVSYPLTPDECTTDTFRFACLGVFLGCEEVPLAALPGAKVVLPVPPCKSVCEAVAVGCESFLAAAGRDP--PDCE---EKTSTGLPLFPEENFSLAIGDQVVSFPCNVPPDQDVDVHKTCPASFSDEDDD----CGTPCPIPLYS 453
            A+LDEE    T  +     P EC        C+G F  C     + +P   V    PPC+SVCEAV +GC +F  + G     PDC+     T T +P FP +       ++                      SF++ D D    C  PCP P+++
Sbjct:   65 AELDEEVGAKTVLMG-AFFPPECRNPLLALTCMGSFTHCR---FSTVPSFDVY---PPCRSVCEAVLLGCTAFFESQGMTSQLPDCDMTDNSTGTVVPAFPPDGTQYNRDEE---------------------DSFAESDYDGQVMCVMPCPNPMWT 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig114792.3073.1 vs. uniprot
Match: L8GEN4_ACACA (Frizzled/Smoothened family membrane region protein n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEN4_ACACA)

HSP 1 Score: 54.7 bits (130), Expect = 8.310e-6
Identity = 50/161 (31.06%), Postives = 67/161 (41.61%), Query Frame = 1 
Query:   67 PDECTTDTFRFACLGVFLGCEEVPLAALPGAKVVLPVPPCKSVCEAVAVGCESFLAAAGR--DPPDCEE---KTSTGLPLFPEENFSLAIGDQVVSFP---CNVPPDQ----DVDVHKT------CP----------ASFSDE----DDDCGTPCPIPLYS 453
            P  C        C+G FL C     + +P   V    PPC+SVCEAV +GC +F  + G     PDC++    T T LP FP +      G Q +S P   C   P      D+  H        CP          +SF++      D C  PCP P++S
Sbjct:   86 PPVCRNPLLALTCMGNFLHCR---FSTVPQFDVY---PPCRSVCEAVVLGCTAFFESQGTLGQLPDCDQIDNSTGTPLPAFPPD------GTQCLSVPPDLCTTSPKPFIHGDLTDHLVPYTQADCPYPLKYNYDGESSFAENGYNGQDMCVMPCPNPMWS 234
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114792.3073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
L8HDT2_ACACA3.210e-831.14Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
L8H7W4_ACACA3.270e-628.66Frizzled/Smoothened family membrane region protein... [more]
L8GEN4_ACACA8.310e-631.06Frizzled/Smoothened family membrane region protein... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114792contigM-pyrifera_M_contig114792:117..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.715255-CDS-M-pyrifera_M_contig114792:116..5691622815663.715255-CDS-M-pyrifera_M_contig114792:116..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114792 117..569 +
1692277510.9329836-CDS-M-pyrifera_M_contig114792:116..5691692277510.9329836-CDS-M-pyrifera_M_contig114792:116..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114792 117..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114792.3073.1prot_M-pyrifera_M_contig114792.3073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114792 117..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114792.3073.1

>prot_M-pyrifera_M_contig114792.3073.1 ID=prot_M-pyrifera_M_contig114792.3073.1|Name=mRNA_M-pyrifera_M_contig114792.3073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
SSQAQLDEEAYQNTFGVSYPLTPDECTTDTFRFACLGVFLGCEEVPLAAL
PGAKVVLPVPPCKSVCEAVAVGCESFLAAAGRDPPDCEEKTSTGLPLFPE
ENFSLAIGDQVVSFPCNVPPDQDVDVHKTCPASFSDEDDDCGTPCPIPLY
S
back to top

mRNA from alignment at M-pyrifera_M_contig114792:117..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114792.3073.1 ID=mRNA_M-pyrifera_M_contig114792.3073.1|Name=mRNA_M-pyrifera_M_contig114792.3073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig114792:117..569+ (Macrocystis pyrifera P11B4 male)
TCGAGCCAGGCCCAGTTGGATGAGGAGGCCTACCAGAACACCTTCGGCGT
GTCGTACCCTCTCACTCCTGATGAGTGCACGACCGACACCTTCCGGTTTG
CTTGCCTGGGCGTGTTCCTCGGTTGCGAAGAGGTACCCCTCGCTGCGCTC
CCTGGTGCCAAGGTAGTGCTCCCCGTGCCCCCATGCAAGTCTGTGTGTGA
AGCCGTTGCCGTTGGCTGCGAGAGCTTTCTCGCCGCGGCAGGCAGGGACC
CCCCCGACTGCGAGGAGAAGACCAGTACTGGCCTTCCCCTCTTTCCCGAA
GAGAACTTCAGCCTTGCCATCGGAGACCAAGTTGTCTCGTTCCCGTGCAA
TGTGCCGCCGGACCAAGATGTGGACGTGCACAAGACCTGCCCGGCCAGTT
TCTCCGATGAGGACGACGACTGTGGAACACCCTGCCCTATCCCGCTCTAC
AGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114792:117..569+

>mRNA_M-pyrifera_M_contig114792.3073.1 ID=mRNA_M-pyrifera_M_contig114792.3073.1|Name=mRNA_M-pyrifera_M_contig114792.3073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig114792:117..569+ (Macrocystis pyrifera P11B4 male)
TCGAGCCAGGCCCAGTTGGATGAGGAGGCCTACCAGAACACCTTCGGCGT
GTCGTACCCTCTCACTCCTGATGAGTGCACGACCGACACCTTCCGGTTTG
CTTGCCTGGGCGTGTTCCTCGGTTGCGAAGAGGTACCCCTCGCTGCGCTC
CCTGGTGCCAAGGTAGTGCTCCCCGTGCCCCCATGCAAGTCTGTGTGTGA
AGCCGTTGCCGTTGGCTGCGAGAGCTTTCTCGCCGCGGCAGGCAGGGACC
CCCCCGACTGCGAGGAGAAGACCAGTACTGGCCTTCCCCTCTTTCCCGAA
GAGAACTTCAGCCTTGCCATCGGAGACCAAGTTGTCTCGTTCCCGTGCAA
TGTGCCGCCGGACCAAGATGTGGACGTGCACAAGACCTGCCCGGCCAGTT
TCTCCGATGAGGACGACGACTGTGGAACACCCTGCCCTATCCCGCTCTAC
AGCTCGAGCCAGGCCCAGTTGGATGAGGAGGCCTACCAGAACACCTTCGG
CGTGTCGTACCCTCTCACTCCTGATGAGTGCACGACCGACACCTTCCGGT
TTGCTTGCCTGGGCGTGTTCCTCGGTTGCGAAGAGGTACCCCTCGCTGCG
CTCCCTGGTGCCAAGGTAGTGCTCCCCGTGCCCCCATGCAAGTCTGTGTG
TGAAGCCGTTGCCGTTGGCTGCGAGAGCTTTCTCGCCGCGGCAGGCAGGG
ACCCCCCCGACTGCGAGGAGAAGACCAGTACTGGCCTTCCCCTCTTTCCC
GAAGAGAACTTCAGCCTTGCCATCGGAGACCAAGTTGTCTCGTTCCCGTG
CAATGTGCCGCCGGACCAAGATGTGGACGTGCACAAGACCTGCCCGGCCA
GTTTCTCCGATGAGGACGACGACTGTGGAACACCCTGCCCTATCCCGCTC
TACAGC
back to top