mRNA_M-pyrifera_M_contig114789.3072.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114789.3072.1
Unique NamemRNA_M-pyrifera_M_contig114789.3072.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114789.3072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114789contigM-pyrifera_M_contig114789:1..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size540
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.650149-CDS-M-pyrifera_M_contig114789:0..5401622815663.650149-CDS-M-pyrifera_M_contig114789:0..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114789 1..540 -
1692277510.914842-CDS-M-pyrifera_M_contig114789:0..5401692277510.914842-CDS-M-pyrifera_M_contig114789:0..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114789 1..540 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.6752012-UTR-M-pyrifera_M_contig114789:540..5701622815663.6752012-UTR-M-pyrifera_M_contig114789:540..570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114789 541..570 -
1692277510.925325-UTR-M-pyrifera_M_contig114789:540..5701692277510.925325-UTR-M-pyrifera_M_contig114789:540..570Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114789 541..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114789.3072.1prot_M-pyrifera_M_contig114789.3072.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114789 1..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114789.3072.1

>prot_M-pyrifera_M_contig114789.3072.1 ID=prot_M-pyrifera_M_contig114789.3072.1|Name=mRNA_M-pyrifera_M_contig114789.3072.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
MAEAVRLWRRSAGEGNVDAMCSLAVCYAEGTVVEKDPEEAARLWTQAVDG
GSADAMCNLGLCYEKGKGVEVDLALAARLFMQAADGGNAAGMWCLGRCYE
IGEGVQQDEAAAARLYRQAVEGGDVDAMCSLGACLERGEGVARDVDEAMG
LWRQAAESGSRRALFSLGLRYEKGEGVEMD
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mRNA from alignment at M-pyrifera_M_contig114789:1..570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114789.3072.1 ID=mRNA_M-pyrifera_M_contig114789.3072.1|Name=mRNA_M-pyrifera_M_contig114789.3072.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig114789:1..570- (Macrocystis pyrifera P11B4 male)
TATGAGGAGGGAAACGGCGTGGAGCAAGACATGGCAGAGGCTGTGCGCCT
GTGGAGGCGGTCGGCGGGGGAGGGAAACGTGGACGCGATGTGCAGCCTGG
CTGTGTGCTATGCAGAGGGAACGGTTGTTGAGAAGGACCCGGAGGAAGCG
GCGAGGTTGTGGACTCAGGCTGTAGACGGGGGAAGTGCTGATGCGATGTG
CAATCTGGGCCTGTGCTACGAGAAGGGGAAGGGTGTGGAGGTGGACTTGG
CTTTGGCGGCGAGGCTCTTCATGCAGGCTGCGGATGGGGGGAACGCAGCT
GGTATGTGGTGTCTGGGTCGGTGCTACGAGATTGGCGAAGGTGTTCAGCA
AGACGAGGCAGCGGCAGCGAGGCTGTACCGGCAGGCGGTTGAAGGTGGGG
ACGTGGATGCCATGTGCAGCTTGGGCGCGTGCTTGGAGAGGGGCGAGGGC
GTGGCGAGGGACGTGGACGAGGCGATGGGTCTGTGGAGGCAGGCAGCGGA
AAGCGGGAGTCGGCGGGCCTTGTTCAGTTTGGGGCTGCGGTATGAGAAGG
GAGAGGGTGTGGAGATGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114789:1..570-

>mRNA_M-pyrifera_M_contig114789.3072.1 ID=mRNA_M-pyrifera_M_contig114789.3072.1|Name=mRNA_M-pyrifera_M_contig114789.3072.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig114789:1..570- (Macrocystis pyrifera P11B4 male)
ATGGCAGAGGCTGTGCGCCTGTGGAGGCGGTCGGCGGGGGAGGGAAACGT
GGACGCGATGTGCAGCCTGGCTGTGTGCTATGCAGAGGGAACGGTTGTTG
AGAAGGACCCGGAGGAAGCGGCGAGGTTGTGGACTCAGGCTGTAGACGGG
GGAAGTGCTGATGCGATGTGCAATCTGGGCCTGTGCTACGAGAAGGGGAA
GGGTGTGGAGGTGGACTTGGCTTTGGCGGCGAGGCTCTTCATGCAGGCTG
CGGATGGGGGGAACGCAGCTGGTATGTGGTGTCTGGGTCGGTGCTACGAG
ATTGGCGAAGGTGTTCAGCAAGACGAGGCAGCGGCAGCGAGGCTGTACCG
GCAGGCGGTTGAAGGTGGGGACGTGGATGCCATGTGCAGCTTGGGCGCGT
GCTTGGAGAGGGGCGAGGGCGTGGCGAGGGACGTGGACGAGGCGATGGGT
CTGTGGAGGCAGGCAGCGGAAAGCGGGAGTCGGCGGGCCTTGTTCAGTTT
GGGGCTGCGGTATGAGAAGGGAGAGGGTGTGGAGATGGACATGGCAGAGG
CTGTGCGCCTGTGGAGGCGGTCGGCGGGGGAGGGAAACGTGGACGCGATG
TGCAGCCTGGCTGTGTGCTATGCAGAGGGAACGGTTGTTGAGAAGGACCC
GGAGGAAGCGGCGAGGTTGTGGACTCAGGCTGTAGACGGGGGAAGTGCTG
ATGCGATGTGCAATCTGGGCCTGTGCTACGAGAAGGGGAAGGGTGTGGAG
GTGGACTTGGCTTTGGCGGCGAGGCTCTTCATGCAGGCTGCGGATGGGGG
GAACGCAGCTGGTATGTGGTGTCTGGGTCGGTGCTACGAGATTGGCGAAG
GTGTTCAGCAAGACGAGGCAGCGGCAGCGAGGCTGTACCGGCAGGCGGTT
GAAGGTGGGGACGTGGATGCCATGTGCAGCTTGGGCGCGTGCTTGGAGAG
GGGCGAGGGCGTGGCGAGGGACGTGGACGAGGCGATGGGTCTGTGGAGGC
AGGCAGCGGAAAGCGGGAGTCGGCGGGCCTTGTTCAGTTTGGGGCTGCGG
TATGAGAAGGGAGAGGGTGTGGAGATGGAC
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