mRNA_M-pyrifera_M_contig114776.3066.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114776.3066.1
Unique NamemRNA_M-pyrifera_M_contig114776.3066.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A3D5DGX9_9GAMM (DNA helicase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGX9_9GAMM)

HSP 1 Score: 164 bits (414), Expect = 2.590e-45
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 DAYQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            D YQAYE+AC RAGLVDFAELLLRA+ELW   P LLRHY+ERF HVLVDEFQDT+ LQY WLRQLVG  GNLFVVGDDDQSIYSWRGA +ENM
Sbjct:  172 DVYQAYEEACERAGLVDFAELLLRAYELWSTRPELLRHYQERFRHVLVDEFQDTSVLQYGWLRQLVGAQGNLFVVGDDDQSIYSWRGASIENM 264
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BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A376L5E2_ECOLX (DNA helicase n=2 Tax=Escherichia coli TaxID=562 RepID=A0A376L5E2_ECOLX)

HSP 1 Score: 151 bits (382), Expect = 4.120e-45
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            YQAY++AC RAGLVDFAELLLRAHELW + P +L+HYRERF ++LVDEFQDTN +QYAW+R L GD G + +VGDDDQSIY WRGA+VEN+
Sbjct:   32 YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENI 122
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BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A2N6GMT4_9GAMM (DNA helicase n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A2N6GMT4_9GAMM)

HSP 1 Score: 161 bits (408), Expect = 1.850e-44
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            YQ Y++AC R G+VDFAELLLRAHELWRD P +L HYRERF HVLVDEFQDTNT+QYAWLR L G++ NLFVVGDDDQSIY WRGAKVEN+
Sbjct:  174 YQEYQNACERGGVVDFAELLLRAHELWRDRPDVLHHYRERFQHVLVDEFQDTNTIQYAWLRLLAGENNNLFVVGDDDQSIYGWRGAKVENI 264
[Close]
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A377B5R8_ECOLX (DNA helicase n=1 Tax=Escherichia coli TaxID=562 RepID=A0A377B5R8_ECOLX)

HSP 1 Score: 151 bits (382), Expect = 2.500e-44
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            YQAY++AC RAGLVDFAELLLRAHELW + P +L+HYRERF ++LVDEFQDTN +QYAW+R L GD G + +VGDDDQSIY WRGA+VEN+
Sbjct:    2 YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENI 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A1G5QRN2_9GAMM (DNA helicase n=1 Tax=Thiohalomonas denitrificans TaxID=415747 RepID=A0A1G5QRN2_9GAMM)

HSP 1 Score: 160 bits (405), Expect = 4.830e-44
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            YQAYE AC R G+VDFAELLLRAHELWRD P LL HYRERF H+LVDEFQDTN +QYAW+R L GD G +FVVGDDDQSIY WRGA+VEN+
Sbjct:  174 YQAYEQACQRGGVVDFAELLLRAHELWRDRPDLLAHYRERFRHILVDEFQDTNAIQYAWIRLLAGDSGQVFVVGDDDQSIYGWRGARVENI 264
[Close]
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: T1CF86_9ZZZZ (DNA helicase (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1CF86_9ZZZZ)

HSP 1 Score: 148 bits (373), Expect = 6.890e-44
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            Y  YE+ACAR+G+VDFAELLLR+ ELWRD P +L+HYR RF HVLVDEFQDTN +QYAWL+ LVG +   FVVGDDDQS+Y WRGA+VEN+
Sbjct:   36 YTLYEEACARSGVVDFAELLLRSFELWRDQPAILQHYRRRFRHVLVDEFQDTNAIQYAWLKLLVGSESCPFVVGDDDQSVYGWRGARVENL 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A379SBL6_SALER (DNA helicase n=1 Tax=Salmonella enterica subsp. arizonae TaxID=59203 RepID=A0A379SBL6_SALER)

HSP 1 Score: 151 bits (381), Expect = 7.920e-44
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            YQAY++AC RAGLVDFAELLLRAHELW + P +L+HYRERF ++LVDEFQDTN +QYAW+R L GD G + +VGDDDQSIY WRGA+VEN+
Sbjct:   31 YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDTGKVMIVGDDDQSIYGWRGAQVENI 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A369CGU3_9GAMM (DNA helicase n=1 Tax=Thioalbus denitrificans TaxID=547122 RepID=A0A369CGU3_9GAMM)

HSP 1 Score: 159 bits (403), Expect = 9.410e-44
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            Y AYE ACAR GLVDFAELLLRAHELW + P LLRHY+ERF H+LVDEFQDTN +QYAWLR L GD G +F VGDDDQSIYSWRGA++ENM
Sbjct:  174 YAAYEAACARGGLVDFAELLLRAHELWLNNPALLRHYQERFRHILVDEFQDTNAIQYAWLRLLAGDSGRMFAVGDDDQSIYSWRGARIENM 264
[Close]
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A377UUS3_KLEPN (DNA helicase n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=A0A377UUS3_KLEPN)

HSP 1 Score: 151 bits (382), Expect = 1.120e-43
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            YQAY++AC RAGLVDFAELLLRAHELW + P +L+HYRERF ++LVDEFQDTN +QYAW+R L GD G + +VGDDDQSIY WRGA+VEN+
Sbjct:   45 YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENI 135
[Close]
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Match: A0A349S3K0_9GAMM (DNA helicase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A349S3K0_9GAMM)

HSP 1 Score: 152 bits (385), Expect = 1.400e-43
Identity = 64/91 (70.33%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    7 YQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDEFQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM 279
            YQAYE AC + GL+DFAE+LLR HE+WR+ P LL  Y++RF H+LVDEFQDTNT+QYAWLRQL G +G+LF+VGDDDQ+IY WRGAK+EN+
Sbjct:  175 YQAYEQACQQNGLIDFAEILLRCHEMWRNHPALLTEYQQRFQHILVDEFQDTNTIQYAWLRQLTGKEGHLFIVGDDDQAIYGWRGAKIENI 265
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114776.3066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DGX9_9GAMM2.590e-4581.72DNA helicase n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A376L5E2_ECOLX4.120e-4572.53DNA helicase n=2 Tax=Escherichia coli TaxID=562 Re... [more]
A0A2N6GMT4_9GAMM1.850e-4479.12DNA helicase n=1 Tax=Sedimenticola sp. TaxID=19402... [more]
A0A377B5R8_ECOLX2.500e-4472.53DNA helicase n=1 Tax=Escherichia coli TaxID=562 Re... [more]
A0A1G5QRN2_9GAMM4.830e-4478.02DNA helicase n=1 Tax=Thiohalomonas denitrificans T... [more]
T1CF86_9ZZZZ6.890e-4471.43DNA helicase (Fragment) n=1 Tax=mine drainage meta... [more]
A0A379SBL6_SALER7.920e-4472.53DNA helicase n=1 Tax=Salmonella enterica subsp. ar... [more]
A0A369CGU3_9GAMM9.410e-4478.02DNA helicase n=1 Tax=Thioalbus denitrificans TaxID... [more]
A0A377UUS3_KLEPN1.120e-4372.53DNA helicase n=1 Tax=Klebsiella pneumoniae TaxID=5... [more]
A0A349S3K0_9GAMM1.400e-4370.33DNA helicase (Fragment) n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114776contigM-pyrifera_M_contig114776:231..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score157.5
Seed ortholog evalue3e-36
Seed eggNOG ortholog343509.SG2342
Preferred nameuvrD
KEGG koko:K03656,ko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006289,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0022607,GO:0031297,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0034645,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045005,GO:0046483,GO:0050896,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0065003,GO:0070035,GO:0070581,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576
EggNOG free text desc.it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction
EggNOG OGs1MU0G@1224,1RNJI@1236,COG0210@1,COG0210@2
EC3.6.4.12
COG Functional cat.L
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.4226084-CDS-M-pyrifera_M_contig114776:230..5091622815663.4226084-CDS-M-pyrifera_M_contig114776:230..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114776 231..509 +
1692277510.8363438-CDS-M-pyrifera_M_contig114776:230..5091692277510.8363438-CDS-M-pyrifera_M_contig114776:230..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114776 231..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114776.3066.1prot_M-pyrifera_M_contig114776.3066.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114776 231..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114776.3066.1

>prot_M-pyrifera_M_contig114776.3066.1 ID=prot_M-pyrifera_M_contig114776.3066.1|Name=mRNA_M-pyrifera_M_contig114776.3066.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
DAYQAYEDACARAGLVDFAELLLRAHELWRDTPGLLRHYRERFWHVLVDE
FQDTNTLQYAWLRQLVGDDGNLFVVGDDDQSIYSWRGAKVENM
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mRNA from alignment at M-pyrifera_M_contig114776:231..509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114776.3066.1 ID=mRNA_M-pyrifera_M_contig114776.3066.1|Name=mRNA_M-pyrifera_M_contig114776.3066.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig114776:231..509+ (Macrocystis pyrifera P11B4 male)
GACGCCTACCAGGCTTACGAAGACGCCTGCGCGCGCGCCGGTCTCGTCGA
CTTCGCCGAGTTGCTGCTGCGCGCCCACGAACTGTGGCGTGACACGCCGG
GTCTGTTGCGGCATTACCGCGAGCGTTTCTGGCATGTGCTCGTCGACGAA
TTTCAGGATACGAACACGCTGCAGTATGCCTGGCTGCGCCAGCTCGTCGG
TGACGACGGTAATCTGTTCGTCGTGGGTGACGACGACCAGTCGATTTACA
GCTGGCGCGGGGCGAAAGTCGAAAACATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114776:231..509+

>mRNA_M-pyrifera_M_contig114776.3066.1 ID=mRNA_M-pyrifera_M_contig114776.3066.1|Name=mRNA_M-pyrifera_M_contig114776.3066.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig114776:231..509+ (Macrocystis pyrifera P11B4 male)
GACGCCTACCAGGCTTACGAAGACGCCTGCGCGCGCGCCGGTCTCGTCGA
CTTCGCCGAGTTGCTGCTGCGCGCCCACGAACTGTGGCGTGACACGCCGG
GTCTGTTGCGGCATTACCGCGAGCGTTTCTGGCATGTGCTCGTCGACGAA
TTTCAGGATACGAACACGCTGCAGTATGCCTGGCTGCGCCAGCTCGTCGG
TGACGACGGTAATCTGTTCGTCGTGGGTGACGACGACCAGTCGATTTACA
GCTGGCGCGGGGCGAAAGTCGAAAACATGGACGCCTACCAGGCTTACGAA
GACGCCTGCGCGCGCGCCGGTCTCGTCGACTTCGCCGAGTTGCTGCTGCG
CGCCCACGAACTGTGGCGTGACACGCCGGGTCTGTTGCGGCATTACCGCG
AGCGTTTCTGGCATGTGCTCGTCGACGAATTTCAGGATACGAACACGCTG
CAGTATGCCTGGCTGCGCCAGCTCGTCGGTGACGACGGTAATCTGTTCGT
CGTGGGTGACGACGACCAGTCGATTTACAGCTGGCGCGGGGCGAAAGTCG
AAAACATG
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