mRNA_M-pyrifera_M_contig101452.305.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101452.305.1
Unique NamemRNA_M-pyrifera_M_contig101452.305.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A354ECM7_9DELT (Glyco_trans_2-like domain-containing protein n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A354ECM7_9DELT)

HSP 1 Score: 174 bits (440), Expect = 4.330e-50
Identity = 85/154 (55.19%), Postives = 110/154 (71.43%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGADEVIGGIVKWDERTGVEYLDWHGNYLADDVRARRLVELPELRAN 471
            +SV+VPVYN + +L  CLDSI  Q   DLE+ICVNDASPD    ILT +A  DRR  +++H  N GL  ARNSG+  A+G ++ F+DSDD L+S DAL  L+ R+ +D ADEVIGGIVKW++ TG +YLDWH NYL  +V    L++LP+L AN
Sbjct:   15 VSVIVPVYNVEAYLRECLDSIARQTLDDLEVICVNDASPDRSLAILTEYAGTDRRFVVLNHMENKGLPGARNSGLDIAKGDFIYFIDSDDLLASADALETLYARSITDDADEVIGGIVKWNQDTGEKYLDWHKNYLEKEVCGLSLLDLPQLCAN 168          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A292RTR0_9BACT (Glyco_trans_2-like domain-containing protein n=1 Tax=Candidatus Gastranaerophilales bacterium HUM_11 TaxID=1916216 RepID=A0A292RTR0_9BACT)

HSP 1 Score: 121 bits (304), Expect = 2.780e-32
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLS 288
            +SV+VPVYN +K+L  CLDS++ Q F D EIIC+ND S D C NIL  +A  DRR+ I S  +NLGLSAARN+GM +A G+Y++FVDSDDFLS
Sbjct:    4 VSVIVPVYNVEKYLDVCLDSLINQTFDDFEIICINDGSTDSCLNILRQYAKLDRRIKIFSQ-KNLGLSAARNAGMKQANGEYIVFVDSDDFLS 95          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A5J5FWP4_9BACL (Glycosyltransferase n=1 Tax=Paenibacillus spiritus TaxID=2496557 RepID=A0A5J5FWP4_9BACL)

HSP 1 Score: 126 bits (317), Expect = 9.470e-32
Identity = 57/114 (50.00%), Postives = 86/114 (75.44%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGADEVI 351
            +SVV+PVYN +++L  CL S++GQ   D+E+IC+NDAS D+  +IL  F + D+R+ I++H RN GLS+ARN+G++RA GKY+ F+DSDD++  P+A+  LF++AES   D V 
Sbjct:    8 VSVVIPVYNVERYLDECLQSVIGQTLTDIEVICINDASTDNSMDILEKFRTNDKRIQIITHPRNRGLSSARNTGLSRASGKYIYFLDSDDYIV-PEAMEELFNKAESGVLDAVF 120          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A4Q2K937_9FIRM (Glycosyltransferase n=1 Tax=Candidatus Borkfalkia ceftriaxoniphila TaxID=2508949 RepID=A0A4Q2K937_9FIRM)

HSP 1 Score: 128 bits (322), Expect = 1.820e-31
Identity = 68/151 (45.03%), Postives = 101/151 (66.89%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGADEVIGGIVKWDERTGVEYLDWHGNYLADDVRARRLVELPEL 462
            +SV++PVYN +K+L  CLDSI+ Q +R+LE+ICVNDASPD C+ IL  +A+ D R+ I++H +N GL AAR +G+ +A+G Y+ FVDSDDF+S  D    L  +A ++ AD V+G  V  DE   + Y + +  + +D    ++ V  PEL
Sbjct:    7 LSVIIPVYNTEKWLKRCLDSILAQSYRNLEVICVNDASPDGCSAILEKYAAGDSRIKIINHEKNRGLFAARMTGIKQAKGAYIAFVDSDDFISC-DWFYPLIRKAVNENADMVLGNTVNIDESGQMTYYNNYRRFNSD----KQSVIAPEL 152          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A1Q6TQB7_9GAMM (Glyco_trans_2-like domain-containing protein n=10 Tax=Bacteria TaxID=2 RepID=A0A1Q6TQB7_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 2.330e-30
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLS 288
            +SV+VPVYN +K+L  CLDS++ Q F D EIIC+ND S D C NIL  +A  DRR+ I S  +NLGLSAARN+GM  A G+Y++FVDSDDFLS
Sbjct:    4 VSVIVPVYNVEKYLDVCLDSLINQTFDDFEIICINDGSTDSCLNILRQYAKLDRRIKIFSQ-KNLGLSAARNAGMRHANGEYIVFVDSDDFLS 95          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A5M9I1A9_9FIRM (Glycosyltransferase n=1 Tax=Mediterraneibacter catenae TaxID=2594882 RepID=A0A5M9I1A9_9FIRM)

HSP 1 Score: 120 bits (300), Expect = 2.120e-29
Identity = 61/137 (44.53%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGADEVIGGIVKWDERTGVE-----YLDWH 405
            +SV++PVYN +K+L  CLDS+V Q  +++E+ICVND S D   NIL+ +A KD R+ I+    N GLS+ARN+G+A A G+YV+F+DSDD LSS D L  L+ +AE +  D++      + E   V+     Y+D++
Sbjct:    5 LSVIIPVYNVEKYLPECLDSVVDQSLQEIELICVNDGSRDGSRNILSEYAEKDNRITILDKP-NGGLSSARNAGLAVAEGRYVLFLDSDDRLSSKDVLDCLYQKAEKEALDQLFFDAAPFFESEDVKKKNSNYIDYY 140          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A2S2E0Q3_9ALTE (Putative glycosyltransferase EpsJ n=2 Tax=Saliniradius amylolyticus TaxID=2183582 RepID=A0A2S2E0Q3_9ALTE)

HSP 1 Score: 119 bits (299), Expect = 4.020e-29
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    1 KFSISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGADEVIGGIVKW--DERTGVEYLDWHGNYLADDVRARRLVELPE 459
            K  +S+++PVYN +K++  CL S++GQ + +LE+ICV+D   D+   I   +AS+D RVNIV H  N GL  ARN+G+  A+G+YV F+DSDD L + DA+  L   +    +D V G ++ W  D  T  +YL             R+ +++PE
Sbjct:    2 KMLVSIIIPVYNVEKYIDDCLQSVLGQTYSNLEVICVDDCGNDNSVAICEKYASEDSRVNIVKHEFNKGLPGARNTGLKLAKGEYVYFIDSDDMLGNNDAIEALVKESVHSESDIVTGRVLHWYSDGSTTEDYL---AECQKKSFSGRKFIDVPE 153          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A1Q6UAJ4_9PROT (Uncharacterized protein n=1 Tax=Azospirillum sp. 51_20 TaxID=1896972 RepID=A0A1Q6UAJ4_9PROT)

HSP 1 Score: 121 bits (304), Expect = 4.160e-29
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGAD 342
            ISV++PV+N +KFL  CLDS+ GQ F D+EIICVND S D    IL+ +A +D R+ I+S   N GLSAARN+G+  ARGKY+ F+DSDD++  P+ L  LF  AES GAD
Sbjct:    6 ISVIIPVFNVEKFLPQCLDSVTGQTFADIEIICVNDGSTDKSPEILSRYADRDPRIRIISRT-NGGLSAARNAGLKIARGKYIFFIDSDDWIE-PNTLEKLFATAESTGAD 114          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: UPI0004A6F00D (glycosyltransferase n=1 Tax=Prevotella sp. 10(H) TaxID=1158294 RepID=UPI0004A6F00D)

HSP 1 Score: 115 bits (287), Expect = 5.700e-29
Identity = 55/119 (46.22%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGADEVIGGIVK 366
            IS+++P+YN +K L  C++SIV Q F   E+I VND SPD+   IL+    KD R+ +++H+ N G   AR +G+  ARGKY++FVD+DD++   +AL +L+D+ E + AD VIGG+VK
Sbjct:    5 ISIIIPIYNKEKSLKKCINSIVSQTFEKWELIAVNDCSPDNSYKILSACEKKDNRIKVINHSVNRGAINARFTGLENARGKYIVFVDADDWIPE-NALELLYDKIEKEDADIVIGGMVK 122          
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Match: A0A3D4T4N3_9FIRM (Glycosyl transferase family 2 n=3 Tax=Oscillospiraceae bacterium TaxID=2485925 RepID=A0A3D4T4N3_9FIRM)

HSP 1 Score: 117 bits (294), Expect = 6.870e-29
Identity = 57/145 (39.31%), Postives = 94/145 (64.83%), Query Frame = 1
Query:   10 ISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILTNFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDALSILFDRAESDGADEVIGGIVKWDERTGVEYLDWHGNYLADDVRARRL 444
            +S+++PVYN +K+L  CLDS++GQ + DLEIICV+D +PD    ++ ++A KD R+ ++S  +N GLS ARN+G+  A G+Y++F+D DD+L S +A+    D AE +  D V+ G V+       E   + G+ + ++  +R L
Sbjct:    4 VSIIIPVYNVEKYLPKCLDSVIGQTYADLEIICVDDGTPDRSAAVILSYAEKDERIKLISQ-KNQGLSGARNTGVKSATGEYIVFLDGDDWLDS-EAVETAVDCAEKENTDVVMWGYVREFPEKSAEKRIFDGDRIFNEKSSREL 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101452.305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A354ECM7_9DELT4.330e-5055.19Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A292RTR0_9BACT2.780e-3261.29Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A5J5FWP4_9BACL9.470e-3250.00Glycosyltransferase n=1 Tax=Paenibacillus spiritus... [more]
A0A4Q2K937_9FIRM1.820e-3145.03Glycosyltransferase n=1 Tax=Candidatus Borkfalkia ... [more]
A0A1Q6TQB7_9GAMM2.330e-3061.29Glyco_trans_2-like domain-containing protein n=10 ... [more]
A0A5M9I1A9_9FIRM2.120e-2944.53Glycosyltransferase n=1 Tax=Mediterraneibacter cat... [more]
A0A2S2E0Q3_9ALTE4.020e-2938.71Putative glycosyltransferase EpsJ n=2 Tax=Salinira... [more]
A0A1Q6UAJ4_9PROT4.160e-2955.86Uncharacterized protein n=1 Tax=Azospirillum sp. 5... [more]
UPI0004A6F00D5.700e-2946.22glycosyltransferase n=1 Tax=Prevotella sp. 10(H) T... [more]
A0A3D4T4N3_9FIRM6.870e-2939.31Glycosyl transferase family 2 n=3 Tax=Oscillospira... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101452contigM-pyrifera_M_contig101452:200..670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score123.2
Seed ortholog evalue1e-25
Seed eggNOG ortholog390989.JOEG01000014_gene3009
Preferred nametagF
KEGG koko:K09809
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CDP-glycerol poly(glycerophosphate) glycerophosphotransferase
EggNOG OGs2GM0T@201174,4D9Q2@85008,COG1216@1,COG1216@2,COG1887@1,COG1887@2
EC2.7.8.12
COG Functional cat.M
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815512.5505497-CDS-M-pyrifera_M_contig101452:199..6701622815512.5505497-CDS-M-pyrifera_M_contig101452:199..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101452 200..670 +
1692277445.0052364-CDS-M-pyrifera_M_contig101452:199..6701692277445.0052364-CDS-M-pyrifera_M_contig101452:199..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101452 200..670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101452.305.1prot_M-pyrifera_M_contig101452.305.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101452 200..670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101452.305.1

>prot_M-pyrifera_M_contig101452.305.1 ID=prot_M-pyrifera_M_contig101452.305.1|Name=mRNA_M-pyrifera_M_contig101452.305.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
KFSISVVVPVYNADKFLGPCLDSIVGQRFRDLEIICVNDASPDDCTNILT
NFASKDRRVNIVSHARNLGLSAARNSGMARARGKYVIFVDSDDFLSSPDA
LSILFDRAESDGADEVIGGIVKWDERTGVEYLDWHGNYLADDVRARRLVE
LPELRAN
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mRNA from alignment at M-pyrifera_M_contig101452:200..670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101452.305.1 ID=mRNA_M-pyrifera_M_contig101452.305.1|Name=mRNA_M-pyrifera_M_contig101452.305.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig101452:200..670+ (Macrocystis pyrifera P11B4 male)
AAGTTTTCGATTAGTGTTGTCGTTCCAGTCTACAACGCAGACAAATTTCT TGGTCCATGTTTGGATAGCATCGTCGGGCAACGTTTTCGTGACCTGGAAA TAATTTGCGTGAATGATGCGTCGCCCGACGATTGCACTAACATTTTGACT AACTTCGCTTCGAAAGATCGCCGCGTGAATATCGTTTCTCACGCACGAAA TCTCGGCTTGTCCGCCGCCCGGAATTCCGGGATGGCGCGCGCCCGTGGTA AGTATGTGATTTTTGTTGACAGCGATGATTTTCTTTCGTCACCCGATGCC CTCTCCATCCTTTTCGACCGCGCCGAAAGCGATGGCGCCGACGAAGTCAT CGGTGGCATTGTGAAATGGGATGAAAGGACCGGGGTCGAGTATCTTGATT GGCACGGAAATTACCTTGCCGATGACGTCCGCGCCCGGAGATTAGTGGAG TTGCCCGAACTACGCGCGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101452:200..670+

>mRNA_M-pyrifera_M_contig101452.305.1 ID=mRNA_M-pyrifera_M_contig101452.305.1|Name=mRNA_M-pyrifera_M_contig101452.305.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig101452:200..670+ (Macrocystis pyrifera P11B4 male)
AAGTTTTCGATTAGTGTTGTCGTTCCAGTCTACAACGCAGACAAATTTCT
TGGTCCATGTTTGGATAGCATCGTCGGGCAACGTTTTCGTGACCTGGAAA
TAATTTGCGTGAATGATGCGTCGCCCGACGATTGCACTAACATTTTGACT
AACTTCGCTTCGAAAGATCGCCGCGTGAATATCGTTTCTCACGCACGAAA
TCTCGGCTTGTCCGCCGCCCGGAATTCCGGGATGGCGCGCGCCCGTGGTA
AGTATGTGATTTTTGTTGACAGCGATGATTTTCTTTCGTCACCCGATGCC
CTCTCCATCCTTTTCGACCGCGCCGAAAGCGATGGCGCCGACGAAGTCAT
CGGTGGCATTGTGAAATGGGATGAAAGGACCGGGGTCGAGTATCTTGATT
GGCACGGAAATTACCTTGCCGATGACGTCCGCGCCCGGAGATTAGTGGAG
TTGCCCGAACTACGCGCGAATAAGTTTTCGATTAGTGTTGTCGTTCCAGT
CTACAACGCAGACAAATTTCTTGGTCCATGTTTGGATAGCATCGTCGGGC
AACGTTTTCGTGACCTGGAAATAATTTGCGTGAATGATGCGTCGCCCGAC
GATTGCACTAACATTTTGACTAACTTCGCTTCGAAAGATCGCCGCGTGAA
TATCGTTTCTCACGCACGAAATCTCGGCTTGTCCGCCGCCCGGAATTCCG
GGATGGCGCGCGCCCGTGGTAAGTATGTGATTTTTGTTGACAGCGATGAT
TTTCTTTCGTCACCCGATGCCCTCTCCATCCTTTTCGACCGCGCCGAAAG
CGATGGCGCCGACGAAGTCATCGGTGGCATTGTGAAATGGGATGAAAGGA
CCGGGGTCGAGTATCTTGATTGGCACGGAAATTACCTTGCCGATGACGTC
CGCGCCCGGAGATTAGTGGAGTTGCCCGAACTACGCGCGAAT
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