prot_M-pyrifera_M_contig114633.3047.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig114633.3047.1
Unique Nameprot_M-pyrifera_M_contig114633.3047.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length78
Homology
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BLAST of mRNA_M-pyrifera_M_contig114633.3047.1 vs. uniprot
Match: A0A2V0P0B8_9CHLO (IFRD domain-containing protein (Fragment) n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P0B8_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 4.220e-5
Identity = 27/77 (35.06%), Postives = 40/77 (51.95%), Query Frame = 0 
Query:    2 TLLDTFIRCLRDGKEAGARLAGTAISLLALTAGPQRQDSYRHVYMVLQPLAERDPKLGVRAAALHALAICCFLWSEE 78
            T++      L+ G    A LA TA++L  LT G   +  Y+ V   L   A+       RAAA+ ALA+CCF+ +E+
Sbjct:   86 TVIGRCQAALKKGGATEATLAATALALHVLTLGEPDESGYQGVLPDLLRAAKHGKSAAARAAAVDALAVCCFVMAED 162
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BLAST of mRNA_M-pyrifera_M_contig114633.3047.1 vs. uniprot
Match: A0A087SRG4_AUXPR (Interferon-related developmental regulator 1 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SRG4_AUXPR)

HSP 1 Score: 49.3 bits (116), Expect = 6.040e-5
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 0 
Query:    1 ETLLDTFIRCLRDGKEAGARLAGTAISLLALT--AGPQRQDSYRHVYMVLQPLA--ERDPKLGVRAAALHALAICCFLWSE 77
            ETL   F+R LR GK A ARL   A+ L A+T  AGP  +  +     VL+P+A   + P+   R +A+ AL++ CF+ +E
Sbjct:  119 ETLFQLFLRSLRRGKGAEARLGARALGLHAITLGAGPAVERMHAEALPVLEPIALTGQGPE---RCSAIDALSMLCFVGAE 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114633.3047.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V0P0B8_9CHLO4.220e-535.06IFRD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A087SRG4_AUXPR6.040e-539.51Interferon-related developmental regulator 1 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007701Interferon-related developmental regulator, N-terminalPFAMPF05004IFRDcoord: 1..76
e-value: 9.7E-13
score: 47.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..78
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..76
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 3..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114633contigM-pyrifera_M_contig114633:336..569 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114633.3047.1mRNA_M-pyrifera_M_contig114633.3047.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig114633 336..569 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig114633.3047.1 ID=prot_M-pyrifera_M_contig114633.3047.1|Name=mRNA_M-pyrifera_M_contig114633.3047.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
ETLLDTFIRCLRDGKEAGARLAGTAISLLALTAGPQRQDSYRHVYMVLQP
LAERDPKLGVRAAALHALAICCFLWSEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007701Interferon-rel_develop_reg_N
IPR016024ARM-type_fold